Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001427.1

Orthogroup ID

OG0015091

Physical Location & Seq

Genomic Coordinates Reverse (-)

45216 .. 48028

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

atgctgattccaagcctctcgcttcctgctcccgccaaattccctcggccctcttcttcttcttcttcttctttttctctccgacaccaccaagacccaaactttgagcctctccaccgccgtctgatcacccaaatcaatgtcggccatctccgcaacgcaatctccaccctcgatctcatggccctccgcggctcccaccctgacctccccacctactccctcctcctcaagtcctgcctccgctcccgcaacttccacctcgggaagctcgtccacgcccgcctcgctcagtccaatctcgaccccgactctgtcattctcaactccttgattagcctctactcgaaatcgggagactttgaaaaggcgcgatcgatctttcaaactatgggagagaagagaaatttggtgtcttggagtgcgatggtgtcgtgtttcgcgaacaacggcatgtcgttggaggcggtttcggcgtttgttgatatgcttgaggaggggttttacccgaacgagttttgctttgcgtcggttgttcgggcgtgttcgaattcggagcatgttgcgattgggaaggtggttttcgggtcggtgattaaaactgggtatcttgagtcttacgtgtgtgttgggtcttcgttgattgatatgtttgccaaaggtggtggggacttaagggatgcatataaggtgtttgagaaaatggctgagacggatgtggtgacttggagcttgatgatcactaggtttgcgcagatgggtgatccgagaaaggcggttgagctcgggcgtgttcgaattcggagcatgttgcgattgggaaggtggttttcgggtcgggatgcatataaggtgtttgagaaaatggctgagacggatgtggtgacttggagcttgatgatcaccaggtttgcgcagatgggtgatccgagaaaggcggttgagttgtatatggatatgttgtcaaatgggctaatgccggaccagtttacgataagtggtgttgtatcggcttgtacaaagttggggtcgttggcgttggggcagcagttgcattcgtgggctgtacggtctcggttgggtttggatcactgcgttgggtgttgtttggtggacatgtatgccaagtgtggaggtggtgggtcgatgagtgattcgaggaaggtgtttgatcggatgcgagagcatagtgttatgtcttggactgctgttatcactggatatgtgcagagtggagggggcgatgaggaagctgtcaagctatttgttgaaatgatgtcgtgtggtcatgtttcgccgaatcatttcacgtttgctagcattctgaaggcttgtgcaaacctttctgatgtgcgtaagggagagcaagttcactcccttgctgtgaaacttggtctttcatcggttaattgtgtggggaattcacttattagcatttatgcaaagtctggccaggtggaagatgcgcggaaagcttttgatcttctgtatgagaagaatttgatatcttataatacaatcgttgatgcatatgccaagcatctagacacagaagaagcctttggacttctccatgaagttgagaataccggacttggggctagtgctttcacatttgctagtctcttgagtggagctgccagcctttgtgcagttgataagggcgagcaaatacattcccggattataaaatcaggatttgagtcaaaccaaagcatttgcaatgccttggtttctatgtattccaggtgtggaaacatagacgctgcttttctagtgtttaatgagatggaagattggaatgttatatcatggacttcaatgatcacaggttttgcaaaacatggttatgcggctagagctgtgggactgtttaaccaaatgcttgaggctgggttaaaaccgaatgagatcacatatattgctcttttatcagcatgtagccatgccggtttgatttctgaggggtggaaacacttgaaggaaatgcaccaacaacatggtcttgtcccaaaaatggaacactatgcatgtatggttgatttattgggccgctcaggatcccttgtagaagccattgagtttattaactcaatgccttttgaagctgatgcactaatctggcgaacatttcttggagcatgccgagtgcatggtgacattgagcttgggaaacatgcagcaaagatgattattaagcagaacccacatgattcagcagcatatagcttactatcaaatttgtatgcttccacgggtcagtgggaagaagtagcaaatataagaaaaaatatgaaagagaaagctttggtcaaagaagcaggttctagctggatagaggtgaagaataagatgcacaagttccatgttggagatacttcgcacccaaaagcacgggagatttatgatgaactggaccaattgggttcaaagataaagaaattgggttatgtccccgatacagattttgtacttcatgaggtggaagaggagcaaaaggaatattatttgtttcagcacagtgagaaattagcagtggcatttggtcttataagcacatcgaaatcgaaacccataagagtattcaagaatctccgtgtttgtggagattgtcacactgcacttaagtatatttcaaaagccacgggaagagaaatagtggtaagggattcaaatcggtttcatcagttcaaggatgggacatgttcttgcaatgactactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

908

Amino Acids

100.69

Weight (kDa)

7.76

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	136 - 183	4.8e-06	PPR repeat family
PPR_2	PF13041	293 - 340	1.1e-09	PPR repeat family
PPR_2	PF13041	397 - 447	3.3e-07	PPR repeat family
PPR_2	PF13041	500 - 546	1.9e-06	PPR repeat family
PPR_long	PF17177	507 - 663	1.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	601 - 648	4.1e-12	PPR repeat family
PPR	PF01535	603 - 633	2.1e-06	PPR repeat
E_motif	PF20431	718 - 780	3.1e-16	E motif
Eplus_motif	PF20430	786 - 808	9.4e-07	E+ motif
DYW_deaminase	PF14432	816 - 908	2.5e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49170
fragaria_vesca	FvH4_6g45980 FvH4_6g45980
malus_domestica	MD09G1078500.v1.1 MD13G1104000.v1.1
prunus_persica	Prupe.3G245900_v2.0.a1
pyrus_communis	pycom09g00520
rosa_chinensis	RchiOBHm_Chr2g0164221
rosa_laevigata	RLG00000021445
rosa_multiflora	Rmu_sc0001427.1_g000014
rosa_roxburghii	Rroxscaffold_2G00086710
rosa_rugosa	Rorug02G0507100
rosa_samantha	Rh2BG586100 Rh2CG557000 Rh2DG595700
rosa_wichuraiana	Rw2G047630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1512, 1688, 2552
Acc16I	TGCGCA	2 cut(s)	753, 915
Acc36I	ACCTGC	1 cut(s)	2312
AccBSI	CCGCTC	2 cut(s)	246, 2055
AccII	CGCG	4 cut(s)	192, 373, 443, 1468
AclWI	GGATC	5 cut(s)	758, 920, 1095, 2055, 2068
AcoI	YGGCCR	2 cut(s)	145, 1450
AcsI	RAATTY	7 cut(s)	38, 406, 550, 798, 1420, 1498, 2239
AcuI	CTGAAG	1 cut(s)	1346
AfaI	GTAC	3 cut(s)	1018, 1068, 2472
AfiI	CCNNNNNNNGG	2 cut(s)	1596, 2017
AflII	CTTAAG	2 cut(s)	673, 2624
AflIII	ACRYGT	3 cut(s)	621, 1116, 2702
AjnI	CCWGG	3 cut(s)	905, 1452, 1745
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 1545, 1577
AloI	GAACNNNNNNTCC	2 cut(s)	1353, 1385
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	5 cut(s)	351, 704, 866, 1077, 1628
AlwI	GGATC	5 cut(s)	758, 920, 1095, 2055, 2068
Ama87I	CYCGRG	2 cut(s)	263, 785
AoxI	GGCC	5 cut(s)	47, 145, 183, 1450, 2050
ApeKI	GCWGC	5 cut(s)	1045, 1637, 1766, 2180, 2219
ApoI	RAATTY	7 cut(s)	38, 406, 550, 798, 1420, 1498, 2239
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 1013, 1045
Asp700I	GAANNNNTTC	1 cut(s)	1304
AspLEI	GCGC	4 cut(s)	373, 754, 916, 1468
AspS9I	GGNCC	5 cut(s)	48, 184, 982, 2050, 2416
AsuC2I	CCSGG	1 cut(s)	1681
AsuHPI	GGTGA	9 cut(s)	121, 604, 733, 773, 895, 895, 935, 2168, 2353
AsuII	TTCGAA	2 cut(s)	548, 796
AsuNHI	GCTAGC	1 cut(s)	1316
AvaI	CYCGRG	2 cut(s)	263, 785
AvaII	GGWCC	2 cut(s)	982, 2416
BalI	TGGCCA	1 cut(s)	1452
BamHI	GGATCC	1 cut(s)	2060
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	5 cut(s)	1057, 1624, 1753, 2192, 2231
BccI	CCATC	6 cut(s)	156, 421, 751, 913, 1783, 2690
BceAI	ACGGC	2 cut(s)	105, 466
BciT130I	CCWGG	3 cut(s)	907, 1454, 1747
BclI	TGATCA	4 cut(s)	126, 738, 900, 1824
BcnI	CCSGG	1 cut(s)	1681
BcoDI	GTCTC	5 cut(s)	351, 704, 866, 1077, 1628
BfaI	CTAG	8 cut(s)	744, 1317, 1544, 1602, 1620, 1775, 1857, 2328
BfrI	CTTAAG	2 cut(s)	673, 2624
BfuAI	ACCTGC	1 cut(s)	2312
BisI	GCNGC	8 cut(s)	193, 1046, 1638, 1767, 1854, 2053, 2181, 2220
BlsI	GCNGC	8 cut(s)	194, 1047, 1639, 1768, 1855, 2054, 2182, 2221
Bme1390I	CCNGG	4 cut(s)	907, 1454, 1681, 1747
Bme18I	GGWCC	2 cut(s)	982, 2416
BmeT110I	CYCGRG	2 cut(s)	263, 785
BmgT120I	GGNCC	5 cut(s)	48, 184, 982, 2050, 2416
BmiI	GGNNCC	2 cut(s)	196, 2062
BmrFI	CCNGG	4 cut(s)	907, 1454, 1681, 1747
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	8 cut(s)	670, 832, 1167, 1453, 1516, 1549, 2101, 2343
BmtI	GCTAGC	1 cut(s)	1320
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	2056
Bpu14I	TTCGAA	2 cut(s)	548, 796
BpuEI	CTTGAG	5 cut(s)	215, 512, 632, 1648, 1907
BpuMI	CCSGG	1 cut(s)	1681
Bsa29I	ATCGAT	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	622
BsaBI	GATNNNNATC	1 cut(s)	2673
BsaI	GGTCTC	1 cut(s)	1077
BsaJI	CCNNGG	6 cut(s)	44, 190, 262, 1728, 2253, 2643
BsaWI	WCCGGW	1 cut(s)	1589
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 1353, 1383
Bsc4I	CCNNNNNNNGG	2 cut(s)	1596, 2017
Bse118I	RCCGGY	1 cut(s)	1949
Bse1I	ACTGG	5 cut(s)	607, 985, 1222, 2418, 2726
Bse3DI	GCAATG	2 cut(s)	1729, 2719
Bse8I	GATNNNNATC	1 cut(s)	2673
BseBI	CCWGG	3 cut(s)	907, 1454, 1747
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	6 cut(s)	44, 190, 262, 1728, 2253, 2643
BseGI	GGATG	6 cut(s)	685, 721, 847, 883, 1182, 2701
BseJI	GATNNNNATC	1 cut(s)	2673
BseLI	CCNNNNNNNGG	2 cut(s)	1596, 2017
BseMI	GCAATG	2 cut(s)	1729, 2719
BseMII	CTCAG	5 cut(s)	305, 699, 861, 1953, 2070
BseNI	ACTGG	5 cut(s)	607, 985, 1222, 2418, 2726
BseRI	GAGGAG	4 cut(s)	215, 218, 509, 2504
BseXI	GCAGC	5 cut(s)	1057, 1624, 1753, 2192, 2231
BseYI	CCCAGC	1 cut(s)	1892
BsgI	GTGCAG	3 cut(s)	1247, 1671, 2604
Bsh1236I	CGCG	4 cut(s)	192, 373, 443, 1468
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	5 cut(s)	49, 147, 185, 1452, 2052
BshVI	ATCGAT	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	786
BsiHKCI	CYCGRG	2 cut(s)	263, 785
BsiSI	CCGG	4 cut(s)	980, 1590, 1681, 1950
BslFI	GGGAC	5 cut(s)	683, 1881, 1994, 2438, 2713
BslI	CCNNNNNNNGG	2 cut(s)	1596, 2017
BsmAI	GTCTC	5 cut(s)	351, 704, 866, 1077, 1628
BsmBI	CGTCTC	2 cut(s)	704, 866
BsmFI	GGGAC	5 cut(s)	683, 1881, 1994, 2438, 2713
BsmI	GAATGC	2 cut(s)	1054, 1320
BsnI	GGCC	5 cut(s)	49, 147, 185, 1452, 2052
Bso31I	GGTCTC	1 cut(s)	1077
BsoBI	CYCGRG	2 cut(s)	263, 785
Bsp119I	TTCGAA	2 cut(s)	548, 796
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp68I	TCGCGA	1 cut(s)	443
BspANI	GGCC	5 cut(s)	49, 147, 185, 1452, 2052
BspCNI	CTCAG	5 cut(s)	304, 700, 862, 1954, 2069
BspDI	ATCGAT	1 cut(s)	377
BspFNI	CGCG	4 cut(s)	192, 373, 443, 1468
BspHI	TCATGA	1 cut(s)	2476
BspLI	GGNNCC	2 cut(s)	196, 2062
BspMI	ACCTGC	1 cut(s)	2312
BspOI	GCTAGC	1 cut(s)	1320
BspPI	GGATC	5 cut(s)	758, 920, 1095, 2055, 2068
BspT104I	TTCGAA	2 cut(s)	548, 796
BspTI	CTTAAG	2 cut(s)	673, 2624
BspTNI	GGTCTC	1 cut(s)	1077
BsrBI	CCGCTC	2 cut(s)	246, 2055
BsrDI	GCAATG	2 cut(s)	1729, 2719
BsrFI	RCCGGY	1 cut(s)	1949
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	5 cut(s)	607, 985, 1222, 2418, 2726
BssAI	RCCGGY	1 cut(s)	1949
BssECI	CCNNGG	6 cut(s)	44, 190, 262, 1728, 2253, 2643
BssT1I	CCWWGG	1 cut(s)	1728
Bst2UI	CCWGG	3 cut(s)	907, 1454, 1747
Bst4CI	ACNGT	3 cut(s)	1071, 1872, 2522
Bst6I	CTCTTC	4 cut(s)	58, 395, 2481, 2644
BstAFI	CTTAAG	2 cut(s)	673, 2624
BstAPI	GCANNNNNTGC	1 cut(s)	1051
BstAUI	TGTACA	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	622
BstBI	TTCGAA	2 cut(s)	548, 796
BstC8I	GCNNGC	5 cut(s)	283, 1318, 1642, 1667, 2143
BstDEI	CTNAG	5 cut(s)	291, 708, 870, 1962, 2056
BstDSI	CCRYGG	3 cut(s)	190, 2253, 2643
BstF5I	GGATG	6 cut(s)	685, 721, 847, 883, 1182, 2701
BstFNI	CGCG	4 cut(s)	192, 373, 443, 1468
BstHHI	GCGC	4 cut(s)	373, 754, 916, 1468
BstMAI	GTCTC	5 cut(s)	351, 704, 866, 1077, 1628
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 1051, 1472, 1859
BstNI	CCWGG	3 cut(s)	907, 1454, 1747
BstNSI	RCATGY	9 cut(s)	457, 563, 811, 1120, 1941, 2034, 2145, 2180, 2706
BstSCI	CCNGG	4 cut(s)	905, 1452, 1679, 1745
BstUI	CGCG	4 cut(s)	192, 373, 443, 1468
BstV1I	GCAGC	5 cut(s)	1057, 1624, 1753, 2192, 2231
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	2060
BstXI	CCANNNNNNTGG	1 cut(s)	2000
BstYI	RGATCY	1 cut(s)	2060
Bsu15I	ATCGAT	1 cut(s)	377
BsuRI	GGCC	5 cut(s)	49, 147, 185, 1452, 2052
BsuTUI	ATCGAT	1 cut(s)	377
BtgI	CCRYGG	3 cut(s)	190, 2253, 2643
BtgZI	GCGATG	2 cut(s)	440, 1257
BtsCI	GGATG	6 cut(s)	685, 721, 847, 883, 1182, 2701
BtsI	GCAGTG	3 cut(s)	1090, 2541, 2616
BtsIMutI	CAGTG	6 cut(s)	1090, 1215, 2267, 2527, 2541, 2616
BtuMI	TCGCGA	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	2312
Cac8I	GCNNGC	5 cut(s)	283, 1318, 1642, 1667, 2143
CciI	TCATGA	1 cut(s)	2476
CfoI	GCGC	4 cut(s)	373, 754, 916, 1468
Cfr10I	RCCGGY	1 cut(s)	1949
Cfr13I	GGNCC	5 cut(s)	48, 184, 982, 2050, 2416
Cfr42I	CCGCGG	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	2 cut(s)	516, 1772
CsiI	ACCWGGT	1 cut(s)	905
Csp6I	GTAC	3 cut(s)	1017, 1067, 2471
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviQI	GTAC	3 cut(s)	1017, 1067, 2471
DdeI	CTNAG	5 cut(s)	291, 708, 870, 1962, 2056
EaeI	YGGCCR	2 cut(s)	145, 1450
Eam1104I	CTCTTC	4 cut(s)	58, 395, 2481, 2644
EarI	CTCTTC	4 cut(s)	58, 395, 2481, 2644
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	1728
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	1077
Eco32I	GATATC	1 cut(s)	1506
Eco47I	GGWCC	2 cut(s)	982, 2416
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	1346
Eco88I	CYCGRG	2 cut(s)	263, 785
EcoICRI	GAGCTC	1 cut(s)	784
EcoRI	GAATTC	3 cut(s)	550, 798, 1420
EcoRII	CCWGG	3 cut(s)	905, 1452, 1745
EcoRV	GATATC	1 cut(s)	1506
EcoT14I	CCWWGG	1 cut(s)	1728
EcoT22I	ATGCAT	4 cut(s)	685, 847, 1531, 2032
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	1728
Esp3I	CGTCTC	2 cut(s)	704, 866
FaqI	GGGAC	5 cut(s)	683, 1881, 1994, 2438, 2713
FauI	CCCGC	3 cut(s)	40, 257, 290
FauNDI	CATATG	1 cut(s)	1531
FbaI	TGATCA	4 cut(s)	126, 738, 900, 1824
Fnu4HI	GCNGC	8 cut(s)	193, 1046, 1638, 1767, 1854, 2053, 2181, 2220
FokI	GGATG	6 cut(s)	692, 728, 854, 890, 1189, 2708
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	8 cut(s)	193, 1046, 1638, 1767, 1854, 2053, 2181, 2220
FspBI	CTAG	8 cut(s)	744, 1317, 1544, 1602, 1620, 1775, 1857, 2328
FspI	TGCGCA	2 cut(s)	753, 915
GlaI	GCGC	4 cut(s)	372, 753, 915, 1467
GluI	GCNGC	8 cut(s)	193, 1046, 1638, 1767, 1854, 2053, 2181, 2220
GsaI	CCCAGC	1 cut(s)	1896
HaeIII	GGCC	5 cut(s)	49, 147, 185, 1452, 2052
HapII	CCGG	4 cut(s)	980, 1590, 1681, 1950
HgaI	GACGC	2 cut(s)	516, 1772
HhaI	GCGC	4 cut(s)	373, 754, 916, 1468
Hin6I	GCGC	4 cut(s)	371, 752, 914, 1466
HinP1I	GCGC	4 cut(s)	371, 752, 914, 1466
HindIII	AAGCTT	2 cut(s)	1473, 2304
HinfI	GANTC	9 cut(s)	7, 311, 614, 1154, 1300, 1703, 2213, 2590, 2669
HpaII	CCGG	4 cut(s)	980, 1590, 1681, 1950
HphI	GGTGA	9 cut(s)	121, 604, 733, 773, 895, 895, 935, 2168, 2353
Hpy166II	GTNNAC	4 cut(s)	277, 990, 1114, 1372
Hpy8I	GTNNAC	4 cut(s)	277, 990, 1114, 1372
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	5 cut(s)	568, 816, 1156, 1321, 1975
HpyCH4III	ACNGT	3 cut(s)	1071, 1872, 2522
HpyCH4IV	ACGT	2 cut(s)	621, 1310
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 1051, 1472, 1859
HpyF3I	CTNAG	5 cut(s)	291, 708, 870, 1962, 2056
HpySE526I	ACGT	2 cut(s)	621, 1310
HspAI	GCGC	4 cut(s)	371, 752, 914, 1466
Ksp22I	TGATCA	4 cut(s)	126, 738, 900, 1824
KspI	CCGCGG	1 cut(s)	193
Lsp1109I	GCAGC	5 cut(s)	1057, 1624, 1753, 2192, 2231
LweI	GCATC	8 cut(s)	670, 832, 1167, 1453, 1516, 1549, 2101, 2343
MabI	ACCWGGT	1 cut(s)	905
MaeI	CTAG	8 cut(s)	744, 1317, 1544, 1602, 1620, 1775, 1857, 2328
MaeII	ACGT	2 cut(s)	621, 1310
MaeIII	GTNAC	4 cut(s)	721, 883, 2156, 2612
MbiI	CCGCTC	2 cut(s)	246, 2055
MfeI	CAATTG	1 cut(s)	2420
MflI	RGATCY	1 cut(s)	2060
MhlI	GDGCHC	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	1452
MluNI	TGGCCA	1 cut(s)	1452
MlyI	GAGTC	3 cut(s)	305, 623, 1712
MmeI	TCCRAC	3 cut(s)	106, 441, 2350
Mox20I	TGGCCA	1 cut(s)	1452
Mph1103I	ATGCAT	4 cut(s)	685, 847, 1531, 2032
MroXI	GAANNNNTTC	1 cut(s)	1304
MscI	TGGCCA	1 cut(s)	1452
MseI	TTAA	9 cut(s)	597, 674, 1407, 1782, 1875, 1898, 2088, 2196, 2625
MslI	CAYNNNNRTG	1 cut(s)	1848
Msp20I	TGGCCA	1 cut(s)	1452
MspA1I	CMGCKG	1 cut(s)	192
MspCI	CTTAAG	2 cut(s)	673, 2624
MspI	CCGG	4 cut(s)	980, 1590, 1681, 1950
MspR9I	CCNGG	4 cut(s)	907, 1454, 1681, 1747
MunI	CAATTG	1 cut(s)	2420
Mva1269I	GAATGC	2 cut(s)	1054, 1320
MvaI	CCWGG	3 cut(s)	907, 1454, 1747
MvnI	CGCG	4 cut(s)	192, 373, 443, 1468
MwoI	GCNNNNNNNGC	6 cut(s)	153, 287, 473, 1051, 1472, 1859
NciI	CCSGG	1 cut(s)	1681
NdeI	CATATG	1 cut(s)	1531
NheI	GCTAGC	1 cut(s)	1316
NlaIV	GGNNCC	2 cut(s)	196, 2062
NmeAIII	GCCGAG	2 cut(s)	25, 2171
NmuCI	GTSAC	4 cut(s)	721, 883, 2156, 2612
NruI	TCGCGA	1 cut(s)	443
NsbI	TGCGCA	2 cut(s)	753, 915
NsiI	ATGCAT	4 cut(s)	685, 847, 1531, 2032
NspI	RCATGY	9 cut(s)	457, 563, 811, 1120, 1941, 2034, 2145, 2180, 2706
NspV	TTCGAA	2 cut(s)	548, 796
PaeI	GCATGC	1 cut(s)	2145
PagI	TCATGA	1 cut(s)	2476
PciI	ACATGT	2 cut(s)	1116, 2702
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 440
PctI	GAATGC	2 cut(s)	1054, 1320
PdmI	GAANNNNTTC	1 cut(s)	1304
PfeI	GAWTC	6 cut(s)	7, 1154, 1300, 2213, 2590, 2669
PflFI	GACNNNGTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	1679
PkrI	GCNGC	8 cut(s)	194, 1047, 1639, 1768, 1855, 2054, 2182, 2221
Ple19I	CGATCG	1 cut(s)	377
PleI	GAGTC	3 cut(s)	305, 622, 1711
PpsI	GAGTC	3 cut(s)	305, 622, 1711
Ppu21I	YACGTR	1 cut(s)	622
PscI	ACATGT	2 cut(s)	1116, 2702
PsiI	TTATAA	3 cut(s)	1512, 1688, 2552
Psp124BI	GAGCTC	1 cut(s)	786
Psp6I	CCWGG	3 cut(s)	905, 1452, 1745
PspFI	CCCAGC	1 cut(s)	1892
PspGI	CCWGG	3 cut(s)	905, 1452, 1745
PspN4I	GGNNCC	2 cut(s)	196, 2062
PspPI	GGNCC	5 cut(s)	48, 184, 982, 2050, 2416
PsuI	RGATCY	1 cut(s)	2060
PsyI	GACNNNGTC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	377
RruI	TCGCGA	1 cut(s)	443
RsaI	GTAC	3 cut(s)	1018, 1068, 2472
RsaNI	GTAC	3 cut(s)	1017, 1067, 2471
RseI	CAYNNNNRTG	1 cut(s)	1848
SacI	GAGCTC	1 cut(s)	786
SacII	CCGCGG	1 cut(s)	193
SaqAI	TTAA	9 cut(s)	597, 674, 1407, 1782, 1875, 1898, 2088, 2196, 2625
SatI	GCNGC	8 cut(s)	193, 1046, 1638, 1767, 1854, 2053, 2181, 2220
Sau96I	GGNCC	5 cut(s)	48, 184, 982, 2050, 2416
SchI	GAGTC	3 cut(s)	305, 623, 1712
ScrFI	CCNGG	4 cut(s)	907, 1454, 1681, 1747
SduI	GDGCHC	1 cut(s)	786
SexAI	ACCWGGT	1 cut(s)	905
SfaNI	GCATC	8 cut(s)	670, 832, 1167, 1453, 1516, 1549, 2101, 2343
Sfr303I	CCGCGG	1 cut(s)	193
SfuI	TTCGAA	2 cut(s)	548, 796
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	982, 2416
SmiMI	CAYNNNNRTG	1 cut(s)	1848
SmlI	CTYRAG	7 cut(s)	230, 491, 611, 673, 1627, 1886, 2624
SmoI	CTYRAG	7 cut(s)	230, 491, 611, 673, 1627, 1886, 2624
SphI	GCATGC	1 cut(s)	2145
SspI	AATATT	1 cut(s)	2504
SspMI	CTAG	8 cut(s)	744, 1317, 1544, 1602, 1620, 1775, 1857, 2328
SstI	GAGCTC	1 cut(s)	786
StyD4I	CCNGG	4 cut(s)	905, 1452, 1679, 1745
StyI	CCWWGG	1 cut(s)	1728
TaaI	ACNGT	3 cut(s)	1071, 1872, 2522
TaiI	ACGT	2 cut(s)	624, 1313
TatI	WGTACW	2 cut(s)	1016, 2470
TauI	GCSGC	3 cut(s)	195, 1856, 2055
TfiI	GAWTC	6 cut(s)	7, 1154, 1300, 2213, 2590, 2669
Tru1I	TTAA	9 cut(s)	597, 674, 1407, 1782, 1875, 1898, 2088, 2196, 2625
Tru9I	TTAA	9 cut(s)	597, 674, 1407, 1782, 1875, 1898, 2088, 2196, 2625
TscAI	CASTG	6 cut(s)	1097, 1222, 2267, 2527, 2541, 2623
TseFI	GTSAC	4 cut(s)	721, 883, 2156, 2612
TseI	GCWGC	5 cut(s)	1045, 1637, 1766, 2180, 2219
Tsp45I	GTSAC	4 cut(s)	721, 883, 2156, 2612
TspDTI	ATGAA	6 cut(s)	1389, 1590, 2309, 2424, 2465, 2672
TspGWI	ACGGA	3 cut(s)	728, 890, 2585
TspRI	CASTG	6 cut(s)	1097, 1222, 2267, 2527, 2541, 2623
Tth111I	GACNNNGTC	1 cut(s)	314
Vha464I	CTTAAG	2 cut(s)	673, 2624
VpaK11BI	GGWCC	2 cut(s)	982, 2416
XapI	RAATTY	7 cut(s)	38, 406, 550, 798, 1420, 1498, 2239
XbaI	TCTAGA	1 cut(s)	1543
XceI	RCATGY	9 cut(s)	457, 563, 811, 1120, 1941, 2034, 2145, 2180, 2706
XmnI	GAANNNNTTC	1 cut(s)	1304
XspI	CTAG	8 cut(s)	744, 1317, 1544, 1602, 1620, 1775, 1857, 2328
Zsp2I	ATGCAT	4 cut(s)	685, 847, 1531, 2032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.