Rmu_sc0001465.1_g000015

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001465.1
OG0005113
Physical Location & Seq
Forward (+)
59278 .. 61418
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
atggttgatggcggagtgcagttgcgacgcctagctcagggatggttgttttgtgctgatgcaggtcgcggcggtggctgggcggattgggaagacgcaggtcgggcgatgtggacggaacttggctggacagtgatgtacgacggggatgcgagagaagaaggactggcccgaatcagcatgacgggcctggagcaatttcccttggtggactactctatttggccgcgaactgttgggctggggttctgccctacatttccattagcctgcctgagcccgaataatctcgccgcttcccagagaacgactgtggacttgaacgaggcacccttcaagattaaggaagaacaccttgccaaagtaagagcactatgccgatctgaagtactgaacaagatcatggatggcaatgacatgtcacagcttacatacacgggggatgacacaacagaagtagggctctcaaagagaaaaaggtacatggaaatccaagaagtactaagtaaggcttttgaggaagataaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001666 GO:0002376 GO:0002682 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009627 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010112 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0032101 GO:0032870 GO:0035690 GO:0036293 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080027 GO:0080090 GO:0080134 GO:0098542 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

4.82

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_like_C PF12313 87 - 176 2.6e-18 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 53, 89
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 2 cut(s) 69, 229
AciI CCGC 6 cut(s) 12, 69, 72, 83, 227, 294
AcoI YGGCCR 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 4 cut(s) 140, 390, 482, 501
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 2 cut(s) 322, 337
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 35, 427
AluI AGCT 2 cut(s) 35, 427
Alw21I GWGCWC 1 cut(s) 373
AoxI GGCC 3 cut(s) 168, 187, 224
AspS9I GGNCC 2 cut(s) 169, 187
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 2 cut(s) 281, 465
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 373
BccI CCATC 3 cut(s) 2, 36, 401
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 53, 89
BisI GCNGC 3 cut(s) 70, 227, 294
BlsI GCNGC 3 cut(s) 71, 228, 295
BmcAI AGTACT 2 cut(s) 390, 501
Bme1390I CCNGG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 169, 187
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 49, 139
BoxI GACNNNNGTC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 2 cut(s) 36, 275
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 4 cut(s) 47, 154, 412, 448
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 50, 266
BseNI ACTGG 1 cut(s) 171
BseYI CCCAGC 2 cut(s) 78, 241
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 69, 229
BshFI GGCC 3 cut(s) 170, 189, 226
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 3 cut(s) 170, 189, 226
Bsp1286I GDGCHC 3 cut(s) 281, 373, 465
Bsp143I GATC 2 cut(s) 380, 399
BspACI CCGC 6 cut(s) 12, 69, 72, 83, 227, 294
BspANI GGCC 3 cut(s) 170, 189, 226
BspCNI CTCAG 2 cut(s) 49, 267
BspFNI CGCG 2 cut(s) 69, 229
BspLI GGNNCC 1 cut(s) 330
BspMI ACCTGC 2 cut(s) 53, 89
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 380, 399
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 133, 235, 313
BstACI GRCGYC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 3 cut(s) 36, 275, 503
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 4 cut(s) 47, 154, 412, 448
BstFNI CGCG 2 cut(s) 69, 229
BstKTI GATC 2 cut(s) 383, 402
BstMBI GATC 2 cut(s) 380, 399
BstMWI GCNNNNNNNGC 3 cut(s) 75, 104, 186
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 421
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 2 cut(s) 69, 229
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 3 cut(s) 170, 189, 226
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 4 cut(s) 47, 154, 412, 448
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 2 cut(s) 53, 89
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 169, 187
CseI GACGC 2 cut(s) 36, 104
Csp6I GTAC 4 cut(s) 139, 389, 481, 500
CviAII CATG 4 cut(s) 181, 403, 418, 484
CviQI GTAC 4 cut(s) 139, 389, 481, 500
DdeI CTNAG 3 cut(s) 36, 275, 503
DpnI GATC 2 cut(s) 382, 401
DpnII GATC 2 cut(s) 380, 399
EaeI YGGCCR 1 cut(s) 224
EciI GGCGGA 2 cut(s) 27, 98
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 281, 465
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 281, 465
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 184, 406, 421, 487
FaiI YATR 6 cut(s) 182, 376, 404, 419, 433, 485
FalI AAGNNNNNCTT 4 cut(s) 339, 371, 496, 528
FatI CATG 4 cut(s) 180, 402, 417, 483
Fnu4HI GCNGC 3 cut(s) 70, 227, 294
FokI GGATG 4 cut(s) 54, 161, 419, 455
FriOI GRGCYC 2 cut(s) 281, 465
Fsp4HI GCNGC 3 cut(s) 70, 227, 294
FspBI CTAG 1 cut(s) 32
GluI GCNGC 3 cut(s) 70, 227, 294
GsaI CCCAGC 2 cut(s) 82, 245
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 3 cut(s) 170, 189, 226
HgaI GACGC 2 cut(s) 36, 104
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 4 cut(s) 184, 406, 421, 487
HinfI GANTC 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 114, 211, 316
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 3 cut(s) 114, 211, 316
Hpy99I CGWCG 2 cut(s) 30, 146
HpyAV CCTTC 2 cut(s) 155, 343
HpyCH4III ACNGT 3 cut(s) 133, 235, 313
HpyCH4V TGCA 2 cut(s) 19, 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 104, 186
HpyF3I CTNAG 3 cut(s) 36, 275, 503
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 4 cut(s) 184, 406, 421, 487
Kzo9I GATC 2 cut(s) 380, 399
LmnI GCTCC 1 cut(s) 193
LweI GCATC 2 cut(s) 49, 139
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 420
MalI GATC 2 cut(s) 382, 401
MboI GATC 2 cut(s) 380, 399
MboII GAAGA 3 cut(s) 104, 170, 359
MhlI GDGCHC 3 cut(s) 281, 373, 465
MluCI AATT 1 cut(s) 197
MnlI CCTC 2 cut(s) 319, 511
MseI TTAA 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 2 cut(s) 69, 229
MwoI GCNNNNNNNGC 3 cut(s) 75, 104, 186
NdeII GATC 2 cut(s) 380, 399
NlaIII CATG 4 cut(s) 184, 406, 421, 487
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 420
NspI RCATGY 1 cut(s) 421
PciI ACATGT 1 cut(s) 417
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 3 cut(s) 71, 228, 295
PscI ACATGT 1 cut(s) 417
PshAI GACNNNNGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 2 cut(s) 78, 241
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 169, 187
RsaI GTAC 4 cut(s) 140, 390, 482, 501
RsaNI GTAC 4 cut(s) 139, 389, 481, 500
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 70, 227, 294
Sau3AI GATC 2 cut(s) 380, 399
Sau96I GGNCC 2 cut(s) 169, 187
ScaI AGTACT 2 cut(s) 390, 501
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 3 cut(s) 281, 373, 465
SetI ASST 6 cut(s) 37, 67, 103, 357, 429, 482
SfaNI GCATC 2 cut(s) 49, 139
Sse9I AATT 1 cut(s) 197
SsiI CCGC 6 cut(s) 12, 69, 72, 83, 227, 294
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 133, 235, 313
TasI AATT 1 cut(s) 197
TatI WGTACW 2 cut(s) 388, 499
TauI GCSGC 3 cut(s) 72, 229, 296
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 420
Tsp45I GTSAC 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 138
XagI CCTNNNNNAGG 1 cut(s) 35
XceI RCATGY 1 cut(s) 421
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 2 cut(s) 390, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.