Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001474.1

Orthogroup ID

OG0009479

Physical Location & Seq

Genomic Coordinates Reverse (-)

45657 .. 46277

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgggtgcccaagatatggaaaggcaagccctcaacgttttccgaatgcggcttcttggctctaaagttaaggctgttcattctggaacagcaacactaaaggatgctacttcagaagctataagggactgggtaactaatgtcgagacaactcattatattttgggctctgttgctggccctcatccataccctatgatggttcgcgatttccacaatgtgatcggtaaagaaacaagaaaacaggcactggaaaaatggggtggaaagccagatgtgctagttgcttgtgtaggtggaggaacaaacgctatgggactcttccatgagttcgttgaagacaaagatattcgattgataggagtagaagctgcagggtttggattggatagtggcaagcatgctgcaactttgacaaaaggtgatgttggggttctgcacggagctatgagctacttgttacaggatgaagatggccaaattattgagcctcattctataagtgcaggcttagattatcctggggttggacccgagcacagttttctgaaagacttggggcgtgctgagtactacagcgttactgacgatgaagcattggaagcttttaaaaaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009941 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0019904 GO:0031967 GO:0031975 GO:0032787 GO:0034641 GO:0034754 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

206

Amino Acids

22.33

Weight (kDa)

5.55

Isoelectric Point (pI)

21.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	12 - 206	9.9e-13	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27070 AT5G54810
fragaria_vesca	FvH4_2g15220 FvH4_3g22100
malus_domestica	MD03G1208800.v1.1 MD11G1223500.v1.1
prunus_persica	Prupe.4G207900_v2.0.a1
pyrus_communis	pycom03g15780 pycom11g19710
rosa_chinensis	RchiOBHm_Chr5g0037911 RchiOBHm_Chr6g0277971
rosa_laevigata	RLG00000033822
rosa_multiflora	Rmu_sc0001474.1_g000007 Rmu_sc0005416.1_g000042
rosa_roxburghii	Rroxscaffold_1G00042990 Rroxscaffold_7G00190640
rosa_rugosa	Rorug05G0169100
rosa_samantha	Rh5AG257600 Rh6CG230100 Rh6DG220900
rosa_wichuraiana	Rw5G023880 Rw6G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	16, 199, 527
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	5 cut(s)	119, 371, 446, 453, 605
AluI	AGCT	5 cut(s)	119, 371, 446, 453, 605
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	178, 475
ApeKI	GCWGC	2 cut(s)	371, 404
AspS9I	GGNCC	2 cut(s)	179, 530
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	358, 391
BccI	CCATC	2 cut(s)	193, 467
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	372, 574
BisI	GCNGC	3 cut(s)	50, 372, 405
BlsI	GCNGC	3 cut(s)	51, 373, 406
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	179, 530
BmiI	GGNNCC	2 cut(s)	7, 532
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 199, 527
Bse1I	ACTGG	2 cut(s)	134, 255
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	3 cut(s)	109, 184, 472
BseLI	CCNNNNNNNGG	3 cut(s)	16, 199, 527
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	134, 255
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	358, 391
BsgI	GTGCAG	2 cut(s)	422, 525
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	180, 477
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	140, 330
BslI	CCNNNNNNNGG	3 cut(s)	16, 199, 527
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	140, 330
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	180, 477
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	10, 170, 540
Bsp143I	GATC	1 cut(s)	222
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	180, 477
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	7, 532
BspMAI	CTGCAG	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	134, 255
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	6 cut(s)	27, 178, 398, 402, 508, 564
BstDEI	CTNAG	2 cut(s)	511, 567
BstF5I	GGATG	3 cut(s)	109, 184, 472
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 602
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	372, 574
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	358, 391
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	180, 477
BtsCI	GGATG	3 cut(s)	109, 184, 472
BtsIMutI	CAGTG	1 cut(s)	248
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	6 cut(s)	27, 178, 398, 402, 508, 564
CaiI	CAGNNNCTG	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	179, 530
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	2 cut(s)	326, 401
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	511, 567
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	2 cut(s)	329, 404
FaqI	GGGAC	2 cut(s)	140, 330
FatI	CATG	2 cut(s)	325, 400
Fnu4HI	GCNGC	3 cut(s)	50, 372, 405
FokI	GGATG	3 cut(s)	116, 171, 479
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	50, 372, 405
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	3 cut(s)	50, 372, 405
HaeIII	GGCC	2 cut(s)	180, 477
Hin1II	CATG	2 cut(s)	329, 404
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	3 cut(s)	44, 115, 549
Hpy188III	TCNNGA	3 cut(s)	84, 145, 206
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	374, 407, 439, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 602
HpyF3I	CTNAG	2 cut(s)	511, 567
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	329, 404
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	2 cut(s)	358, 391
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	133, 459, 580
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	313, 350, 482
MhlI	GDGCHC	3 cut(s)	10, 170, 540
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	2 cut(s)	480, 614
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	4 cut(s)	41, 192, 293, 501
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	2 cut(s)	69, 609
Msp20I	TGGCCA	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	277, 602
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	329, 404
NlaIV	GGNNCC	2 cut(s)	7, 532
NruI	TCGCGA	1 cut(s)	207
NspI	RCATGY	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	51, 373, 406
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	7, 532
PspPI	GGNCC	2 cut(s)	179, 530
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	250
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	69, 609
SatI	GCNGC	3 cut(s)	50, 372, 405
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	2 cut(s)	179, 530
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	3 cut(s)	10, 170, 540
SetI	ASST	8 cut(s)	39, 121, 298, 373, 424, 448, 455, 607
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	372, 574
SinI	GGWCC	1 cut(s)	530
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	480, 614
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	144, 352
TasI	AATT	2 cut(s)	480, 614
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	69, 609
Tru9I	TTAA	2 cut(s)	69, 609
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	371, 404
TspDTI	ATGAA	3 cut(s)	68, 483, 606
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.