Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0015536

Physical Location & Seq

Genomic Coordinates Forward (+)

86523 .. 87920

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggacgaggagagcaccaacctcgtcaccaggttcttctctatgcctttcggaaaaggacttcttgcctttcgggttgagcagagcaatcactggaaagttttggagaaagaacgggtttttctaaagcgtgactttagcttcgctgggttgcgagagcagctccattcctccatccccacccacctcatctccctcgacgctcagatcaacaccttggccttgccggagctctccaaggtcgttctcctcttacctcgccttaaccccaatcccggcgactcctcctccgctatcacttctctcgccgaaatattgaagcccgattggctttccaagcatcggaccaaagtcccaaccgtctctgcctacctcatcttctcagatcgggtctccaaccatccggcccagtggcttgagctctgctttgaaaatcttctttgcacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Foie-gras_1 Gryzun-like

Protein Analysis

149

Amino Acids

16.95

Weight (kDa)

6.97

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09871 FvH4_2g09871 FvH4_2g14951
rosa_chinensis	RchiOBHm_Chr7g0224701
rosa_laevigata	RLG00000001816 RLG00000013553 RLG00000015904 RLG00000023570 RLG00000031249 RLG00000034529
rosa_multiflora	Rmu_sc0001551.1_g000015 Rmu_sc0012351.1_g000012
rosa_roxburghii	Rroxscaffold_3G00233850
rosa_samantha	Rh3DG202300 Rh7CG396800 Rh7DG374900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	275, 342
AgsI	TTSAA	2 cut(s)	319, 431
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	141, 163, 232, 421
AluI	AGCT	4 cut(s)	141, 163, 232, 421
Alw21I	GWGCWC	3 cut(s)	17, 234, 423
Alw26I	GTCTC	2 cut(s)	367, 397
AoxI	GGCC	2 cut(s)	219, 405
ApeKI	GCWGC	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	345, 406
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	234, 423
Bbv12I	GWGCWC	3 cut(s)	17, 234, 423
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	182, 408
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	367, 397
BfaI	CTAG	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	31, 276
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	345, 406
BmrFI	CCNGG	2 cut(s)	31, 276
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	216, 237
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 342
Bse1I	ACTGG	2 cut(s)	98, 409
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	216, 237
BseGI	GGATG	2 cut(s)	174, 400
BseLI	CCNNNNNNNGG	2 cut(s)	275, 342
BseMII	CTCAG	2 cut(s)	218, 396
BseNI	ACTGG	2 cut(s)	98, 409
BseRI	GAGGAG	4 cut(s)	23, 239, 274, 277
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	221, 407
BsiHKAI	GWGCWC	3 cut(s)	17, 234, 423
BsiSI	CCGG	3 cut(s)	227, 276, 404
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	275, 342
BsmAI	GTCTC	2 cut(s)	367, 397
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	221, 407
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	3 cut(s)	17, 234, 423
Bsp143I	GATC	2 cut(s)	207, 385
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	221, 407
BspCNI	CTCAG	2 cut(s)	217, 395
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	98, 409
BssECI	CCNNGG	2 cut(s)	216, 237
BssMI	GATC	2 cut(s)	207, 385
BssT1I	CCWWGG	2 cut(s)	216, 237
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	204, 382
BstF5I	GGATG	2 cut(s)	174, 400
BstKTI	GATC	2 cut(s)	210, 388
BstMAI	GTCTC	2 cut(s)	367, 397
BstMBI	GATC	2 cut(s)	207, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 328, 337
BstNI	CCWGG	1 cut(s)	31
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	29, 274
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	221, 407
BtsCI	GGATG	2 cut(s)	174, 400
BtsIMutI	CAGTG	2 cut(s)	91, 416
Cfr13I	GGNCC	2 cut(s)	345, 406
CseI	GACGC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	29
CviJI	RGCY	9 cut(s)	141, 163, 221, 232, 322, 331, 407, 415, 421
CviKI_1	RGCY	9 cut(s)	141, 163, 221, 232, 322, 331, 407, 415, 421
DdeI	CTNAG	2 cut(s)	204, 382
DpnI	GATC	2 cut(s)	209, 387
DpnII	GATC	2 cut(s)	207, 385
Ecl136II	GAGCTC	2 cut(s)	232, 421
Eco130I	CCWWGG	2 cut(s)	216, 237
Eco24I	GRGCYC	2 cut(s)	234, 423
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	2 cut(s)	232, 421
EcoICRI	GAGCTC	2 cut(s)	232, 421
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	216, 237
EcoT38I	GRGCYC	2 cut(s)	234, 423
ErhI	CCWWGG	2 cut(s)	216, 237
Esp3I	CGTCTC	1 cut(s)	367
FaiI	YATR	1 cut(s)	44
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 119, 151
FaqI	GGGAC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	161, 387
FriOI	GRGCYC	2 cut(s)	234, 423
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	448
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	221, 407
HapII	CCGG	3 cut(s)	227, 276, 404
HgaI	GACGC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	3 cut(s)	227, 276, 404
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	53, 207, 345, 385
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 328, 337
HpyF3I	CTNAG	2 cut(s)	204, 382
Kzo9I	GATC	2 cut(s)	207, 385
LmnI	GCTCC	2 cut(s)	168, 229
LpnPI	CCDG	8 cut(s)	16, 43, 79, 132, 240, 289, 417, 422
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	29
MaeI	CTAG	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	25, 131
MalI	GATC	2 cut(s)	209, 387
MboI	GATC	2 cut(s)	207, 385
MboII	GAAGA	3 cut(s)	28, 370, 428
MhlI	GDGCHC	3 cut(s)	17, 234, 423
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	9 cut(s)	32, 181, 197, 206, 260, 267, 295, 298, 383
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	264
MspI	CCGG	3 cut(s)	227, 276, 404
MspR9I	CCNGG	2 cut(s)	31, 276
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	160, 328, 337
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	207, 385
NmuCI	GTSAC	2 cut(s)	25, 131
PdmI	GAANNNNTTC	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PshAI	GACNNNNGTC	1 cut(s)	350
Psp124BI	GAGCTC	2 cut(s)	234, 423
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	345, 406
SacI	GAGCTC	2 cut(s)	234, 423
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	207, 385
Sau96I	GGNCC	2 cut(s)	345, 406
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	31, 276
SduI	GDGCHC	3 cut(s)	17, 234, 423
SexAI	ACCWGGT	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SsiI	CCGC	1 cut(s)	291
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	448
SstI	GAGCTC	2 cut(s)	234, 423
StyD4I	CCNGG	2 cut(s)	29, 274
StyI	CCWWGG	2 cut(s)	216, 237
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	98, 416
TseFI	GTSAC	2 cut(s)	25, 131
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	25, 131
TspRI	CASTG	2 cut(s)	98, 416
VpaK11BI	GGWCC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.