Rmu_sc0001659.1_g000026

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001659.1
OG0004522
Physical Location & Seq
Forward (+)
116545 .. 119084
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
atgttcattccatcaaaagaagttctcctatttcttgctcagaagcactatgagaccttcattcttgcagtgctttccattggagtaatatttttggttccaaaatttggttggaaaacggttgcaattagctacagaggtcatatccgtggccggttgggtttaccctttataggtgaaaccttttcttttctttcagcaactaacagcacaaaaggatgctacgagtttgtcagactccgacgacaatggtacgggaagtggttcaagacaaggattttcggaaagatccatgtatttgtgccaagcgcagagggtgcaaaaatgattttttcaaatgattttgtaaagttcaacaaaggctatgtgaaatcaatggcagattgtgtaggaaagaacagcttgctctgtgtaccacatgaaaaccacagaaggataaggcgccttctatcagatcctttctccatgaactctttatctcaatttgttcagaaatttgataaaatgctgtgccagaagttgaagaacctagaagaaggaggaaaaagctttgtggtgcttgaatttggtatgaagatgacatttgatgcaatgtgtagcatgctaatgagtgtcactgaggattcattgttacggaagattgagaaagattgcactactatttcagatgcaatgttatcccttccagtcatgattccaggcaccagatattacaaaggcatcaaggcacgcggacgtcttatggaaacctttaaggacatgattgacagaagaagaagcgggaaggagtctccagaagacttcctacagtccacattagacagagattcataccctcccaatgaaaagcttcaagactcggagattatagacaacctattgacactgataattgcagggcagacaaccactgcagctgcgataatgtggagtgtcaagtttctggacgagaacaaagaagcccaagacagactcagagtaagtaacaaagggaaaattgctaaagacaccatattttctgaccacattatccgatcaacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

9.55

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 54 - 326 1.4e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 739
AccB1I GGYRCC 2 cut(s) 441, 701
AccB7I CCANNNNNTGG 1 cut(s) 107
AccII CGCG 1 cut(s) 732
AciI CCGC 2 cut(s) 732, 780
AclWI GGATC 2 cut(s) 283, 449
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 104, 494, 563
AcyI GRCGYC 2 cut(s) 442, 736
AfaI GTAC 2 cut(s) 254, 414
AfiI CCNNNNNNNGG 2 cut(s) 107, 173
AgsI TTSAA 6 cut(s) 268, 336, 355, 523, 563, 854
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 5 cut(s) 132, 402, 549, 850, 917
AluI AGCT 5 cut(s) 132, 402, 549, 850, 917
Alw26I GTCTC 2 cut(s) 47, 795
AlwI GGATC 2 cut(s) 283, 449
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 914, 917
ApoI RAATTY 3 cut(s) 104, 494, 563
Asp700I GAANNNNTTC 2 cut(s) 263, 849
AspLEI GCGC 2 cut(s) 311, 444
AsuHPI GGTGA 1 cut(s) 188
BanI GGYRCC 2 cut(s) 441, 701
BarI GAAGNNNNNNTAC 2 cut(s) 789, 821
BbsI GAAGAC 1 cut(s) 804
BbvI GCAGC 2 cut(s) 904, 926
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 699
BcoDI GTCTC 2 cut(s) 47, 795
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 3 cut(s) 133, 806, 912
BfoI RGCGCY 1 cut(s) 445
BisI GCNGC 2 cut(s) 915, 918
BlsI GCNGC 2 cut(s) 916, 919
Bme1390I CCNGG 1 cut(s) 699
BmiI GGNNCC 3 cut(s) 99, 443, 703
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 4 cut(s) 209, 577, 658, 729
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 442, 736
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 173
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 686
Bse3DI GCAATG 2 cut(s) 597, 678
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 107, 173
BseMI GCAATG 2 cut(s) 597, 678
BseMII CTCAG 3 cut(s) 53, 609, 988
BseNI ACTGG 1 cut(s) 686
BseXI GCAGC 2 cut(s) 904, 926
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 2 cut(s) 441, 701
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 107, 173
BsmAI GTCTC 2 cut(s) 47, 795
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 288, 454, 1034
BspACI CCGC 2 cut(s) 732, 780
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 3 cut(s) 52, 610, 987
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 3 cut(s) 99, 443, 703
BspMAI CTGCAG 1 cut(s) 916
BspPI GGATC 2 cut(s) 283, 449
BspT107I GGYRCC 2 cut(s) 441, 701
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 597, 678
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 686
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 3 cut(s) 288, 454, 1034
BssNI GRCGYC 2 cut(s) 442, 736
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 2 cut(s) 121, 810
BstACI GRCGYC 2 cut(s) 442, 736
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 404, 602, 730
BstDEI CTNAG 3 cut(s) 39, 618, 974
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 732
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 2 cut(s) 311, 444
BstKTI GATC 3 cut(s) 291, 457, 1037
BstMAI GTCTC 2 cut(s) 47, 795
BstMBI GATC 3 cut(s) 288, 454, 1034
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 3 cut(s) 133, 806, 912
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 2 cut(s) 904, 926
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 288, 454
BstYI RGATCY 2 cut(s) 288, 454
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 224
BtsI GCAGTG 2 cut(s) 75, 909
BtsIMutI CAGTG 4 cut(s) 75, 615, 884, 909
Cac8I GCNNGC 3 cut(s) 404, 602, 730
CciI TCATGA 1 cut(s) 690
CfoI GCGC 2 cut(s) 311, 444
Cfr10I RCCGGY 1 cut(s) 153
Csp6I GTAC 2 cut(s) 253, 413
CviAII CATG 6 cut(s) 293, 419, 466, 601, 691, 760
CviJI RGCY 8 cut(s) 132, 153, 363, 402, 549, 850, 917, 962
CviKI_1 RGCY 8 cut(s) 132, 153, 363, 402, 549, 850, 917, 962
CviQI GTAC 2 cut(s) 253, 413
DdeI CTNAG 3 cut(s) 39, 618, 974
DinI GGCGCC 1 cut(s) 443
DpnI GATC 3 cut(s) 290, 456, 1036
DpnII GATC 3 cut(s) 288, 454, 1034
EaeI YGGCCR 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 697
EgeI GGCGCC 1 cut(s) 443
EheI GGCGCC 1 cut(s) 443
FaeI CATG 6 cut(s) 296, 422, 469, 604, 694, 763
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 6 cut(s) 292, 418, 465, 600, 690, 759
FauI CCCGC 1 cut(s) 773
Fnu4HI GCNGC 2 cut(s) 915, 918
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 915, 918
FspBI CTAG 1 cut(s) 530
GlaI GCGC 2 cut(s) 310, 443
GluI GCNGC 2 cut(s) 915, 918
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 154
HhaI GCGC 2 cut(s) 311, 444
Hin1I GRCGYC 2 cut(s) 442, 736
Hin1II CATG 6 cut(s) 296, 422, 469, 604, 694, 763
Hin6I GCGC 2 cut(s) 309, 442
HinP1I GCGC 2 cut(s) 309, 442
HindIII AAGCTT 2 cut(s) 547, 848
HinfI GANTC 7 cut(s) 237, 623, 694, 788, 827, 857, 972
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 164, 413, 813
Hpy188III TCNNGA 5 cut(s) 268, 691, 794, 854, 944
Hpy8I GTNNAC 3 cut(s) 164, 413, 813
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 6 cut(s) 67, 426, 455, 530, 692, 778
HpyCH4III ACNGT 2 cut(s) 121, 810
HpyCH4IV ACGT 2 cut(s) 736, 1040
HpyCH4V TGCA 8 cut(s) 68, 125, 320, 590, 654, 671, 896, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 39, 618, 974
HpySE526I ACGT 2 cut(s) 736, 1040
Hsp92I GRCGYC 2 cut(s) 442, 736
Hsp92II CATG 6 cut(s) 296, 422, 469, 604, 694, 763
HspAI GCGC 2 cut(s) 309, 442
KasI GGCGCC 1 cut(s) 441
Kzo9I GATC 3 cut(s) 288, 454, 1034
LpnPI CCDG 9 cut(s) 167, 527, 684, 699, 711, 718, 807, 882, 929
Lsp1109I GCAGC 2 cut(s) 904, 926
LweI GCATC 4 cut(s) 209, 577, 658, 729
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 736, 1040
MaeIII GTNAC 3 cut(s) 613, 630, 983
MalI GATC 3 cut(s) 290, 456, 1036
MboI GATC 3 cut(s) 288, 454, 1034
MboII GAAGA 7 cut(s) 535, 545, 586, 649, 783, 786, 809
MflI RGATCY 2 cut(s) 288, 454
MluCI AATT 7 cut(s) 104, 126, 482, 494, 563, 891, 996
Mly113I GGCGCC 1 cut(s) 442
MlyI GAGTC 4 cut(s) 231, 797, 851, 966
MmeI TCCRAC 2 cut(s) 92, 265
MnlI CCTC 5 cut(s) 131, 307, 533, 613, 846
MroXI GAANNNNTTC 2 cut(s) 263, 849
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 2 cut(s) 147, 605
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 442
NdeII GATC 3 cut(s) 288, 454, 1034
NlaIII CATG 6 cut(s) 296, 422, 469, 604, 694, 763
NlaIV GGNNCC 3 cut(s) 99, 443, 703
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 1 cut(s) 604
PaeI GCATGC 1 cut(s) 604
PagI TCATGA 1 cut(s) 690
PdmI GAANNNNTTC 2 cut(s) 263, 849
PfeI GAWTC 3 cut(s) 623, 694, 827
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 2 cut(s) 916, 919
PleI GAGTC 4 cut(s) 231, 796, 851, 966
PluTI GGCGCC 1 cut(s) 445
PpsI GAGTC 4 cut(s) 231, 796, 851, 966
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 3 cut(s) 99, 443, 703
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 288, 454
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 2 cut(s) 254, 414
RsaNI GTAC 2 cut(s) 253, 413
RseI CAYNNNNRTG 2 cut(s) 147, 605
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 2 cut(s) 915, 918
Sau3AI GATC 3 cut(s) 288, 454, 1034
SchI GAGTC 4 cut(s) 231, 797, 851, 966
ScrFI CCNGG 1 cut(s) 699
SfaNI GCATC 4 cut(s) 209, 577, 658, 729
SfcI CTRYAG 3 cut(s) 133, 806, 912
SfoI GGCGCC 1 cut(s) 443
SmiMI CAYNNNNRTG 2 cut(s) 147, 605
SphI GCATGC 1 cut(s) 604
Sse9I AATT 7 cut(s) 104, 126, 482, 494, 563, 891, 996
SsiI CCGC 2 cut(s) 732, 780
SspDI GGCGCC 1 cut(s) 441
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 697
TaaI ACNGT 2 cut(s) 121, 810
TaiI ACGT 2 cut(s) 739, 1043
TasI AATT 7 cut(s) 104, 126, 482, 494, 563, 891, 996
TfiI GAWTC 3 cut(s) 623, 694, 827
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 4 cut(s) 75, 622, 891, 916
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 2 cut(s) 914, 917
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 7 cut(s) 49, 435, 482, 587, 615, 819, 858
TspGWI ACGGA 2 cut(s) 137, 649
TspRI CASTG 4 cut(s) 75, 622, 891, 916
Van91I CCANNNNNTGG 1 cut(s) 107
XapI RAATTY 3 cut(s) 104, 494, 563
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 263, 849
XspI CTAG 1 cut(s) 530
ZraI GACGTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.