NB-ARC domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g06550 |
| rosa_chinensis | RchiOBHm_Chr6g0258471 RchiOBHm_Chr6g0258491 |
| rosa_laevigata | RLG00000014608 |
| rosa_multiflora | Rmu_sc0001663.1_g000003 Rmu_sc0007367.1_g000020 Rmu_sc0027621.1_g000001 |
| rosa_roxburghii | Rroxscaffold_178G00437470 Rroxscaffold_7G00205650 Rroxscaffold_7G00205720 |
| rosa_rugosa | Rorug05G0581900 Rorug05G0581900 Rorug05G0581900 |
| rosa_samantha | Rh6AG098300 Rh6BG089800 Rh6BG089900 Rh6BG090000 Rh6CG086800 Rh6DG081100 |
| rosa_wichuraiana | Rw6G008520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2441 |
| AccB1I | GGYRCC | 1 cut(s) | 711 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3135 |
| AccBSI | CCGCTC | 1 cut(s) | 466 |
| AccI | GTMKAC | 1 cut(s) | 2903 |
| AccII | CGCG | 2 cut(s) | 471, 1871 |
| AciI | CCGC | 5 cut(s) | 216, 466, 1869, 1871, 2612 |
| AclI | AACGTT | 1 cut(s) | 252 |
| AclWI | GGATC | 8 cut(s) | 200, 213, 869, 1738, 1751, 2070, 2319, 3023 |
| AcsI | RAATTY | 8 cut(s) | 883, 1053, 1227, 1259, 1749, 1941, 1978, 2635 |
| AcuI | CTGAAG | 5 cut(s) | 1199, 1497, 2687, 2886, 2939 |
| AcyI | GRCGYC | 1 cut(s) | 712 |
| AfaI | GTAC | 3 cut(s) | 1920, 2461, 3167 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 63, 117, 987, 1126, 1974, 2334, 3135 |
| AflII | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| AjiI | CACGTC | 1 cut(s) | 1774 |
| AjnI | CCWGG | 5 cut(s) | 81, 208, 483, 2292, 2983 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 416, 448 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 2963 |
| Alw26I | GTCTC | 3 cut(s) | 47, 1124, 2744 |
| AlwI | GGATC | 8 cut(s) | 200, 213, 869, 1738, 1751, 2070, 2319, 3023 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2508, 2580 |
| Ama87I | CYCGRG | 1 cut(s) | 2042 |
| AoxI | GGCC | 2 cut(s) | 79, 3137 |
| ApoI | RAATTY | 8 cut(s) | 883, 1053, 1227, 1259, 1749, 1941, 1978, 2635 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 441 |
| AspLEI | GCGC | 6 cut(s) | 274, 471, 652, 714, 2127, 2508 |
| AspS9I | GGNCC | 1 cut(s) | 79 |
| AsuC2I | CCSGG | 1 cut(s) | 2329 |
| AsuHPI | GGTGA | 4 cut(s) | 1550, 2108, 2720, 2998 |
| AvaI | CYCGRG | 1 cut(s) | 2042 |
| BaeGI | GKGCMC | 1 cut(s) | 352 |
| BamHI | GGATCC | 2 cut(s) | 205, 1743 |
| BanI | GGYRCC | 1 cut(s) | 711 |
| BanII | GRGCYC | 1 cut(s) | 2300 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 636, 668 |
| BbsI | GAAGAC | 6 cut(s) | 908, 1262, 1555, 1776, 1805, 2943 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 2963 |
| BceAI | ACGGC | 1 cut(s) | 772 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2251, 2285 |
| BciT130I | CCWGG | 5 cut(s) | 83, 210, 485, 2294, 2985 |
| BciVI | GTATCC | 2 cut(s) | 940, 1482 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BcnI | CCSGG | 1 cut(s) | 2329 |
| BcoDI | GTCTC | 3 cut(s) | 47, 1124, 2744 |
| BfaI | CTAG | 7 cut(s) | 1101, 1277, 1613, 2033, 2192, 2696, 3141 |
| BfmI | CTRYAG | 4 cut(s) | 1362, 1856, 2345, 2677 |
| BfoI | RGCGCY | 4 cut(s) | 653, 715, 2128, 2509 |
| BfrI | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| BfuAI | ACCTGC | 1 cut(s) | 2441 |
| BfuI | GTATCC | 2 cut(s) | 940, 1482 |
| BglII | AGATCT | 1 cut(s) | 31 |
| BmcAI | AGTACT | 1 cut(s) | 1920 |
| Bme1390I | CCNGG | 6 cut(s) | 83, 210, 485, 2294, 2329, 2985 |
| BmeT110I | CYCGRG | 1 cut(s) | 2042 |
| BmgBI | CACGTC | 1 cut(s) | 1774 |
| BmgT120I | GGNCC | 1 cut(s) | 79 |
| BmiI | GGNNCC | 6 cut(s) | 207, 214, 713, 1181, 1745, 2012 |
| BmrFI | CCNGG | 6 cut(s) | 83, 210, 485, 2294, 2329, 2985 |
| BmsI | GCATC | 6 cut(s) | 488, 937, 1146, 2525, 2661, 3109 |
| BpiI | GAAGAC | 6 cut(s) | 908, 1262, 1555, 1776, 1805, 2943 |
| BpmI | CTGGAG | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 5 cut(s) | 250, 402, 1324, 1993, 2644 |
| BpuMI | CCSGG | 1 cut(s) | 2329 |
| BsaBI | GATNNNNATC | 3 cut(s) | 860, 2061, 2539 |
| BsaHI | GRCGYC | 1 cut(s) | 712 |
| BsaJI | CCNNGG | 4 cut(s) | 483, 1125, 1869, 2293 |
| BsaWI | WCCGGW | 1 cut(s) | 1898 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2410, 2440 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 63, 117, 987, 1126, 1974, 2334, 3135 |
| Bse1I | ACTGG | 6 cut(s) | 978, 1033, 1942, 2554, 3150, 3180 |
| Bse3DI | GCAATG | 5 cut(s) | 186, 682, 906, 1962, 2518 |
| Bse8I | GATNNNNATC | 3 cut(s) | 860, 2061, 2539 |
| BseBI | CCWGG | 5 cut(s) | 83, 210, 485, 2294, 2985 |
| BseDI | CCNNGG | 4 cut(s) | 483, 1125, 1869, 2293 |
| BseGI | GGATG | 4 cut(s) | 1174, 2550, 3129, 3184 |
| BseJI | GATNNNNATC | 3 cut(s) | 860, 2061, 2539 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 63, 117, 987, 1126, 1974, 2334, 3135 |
| BseMI | GCAATG | 5 cut(s) | 186, 682, 906, 1962, 2518 |
| BseMII | CTCAG | 5 cut(s) | 1155, 1947, 2313, 2481, 2515 |
| BseNI | ACTGG | 6 cut(s) | 978, 1033, 1942, 2554, 3150, 3180 |
| BseRI | GAGGAG | 1 cut(s) | 1775 |
| BseSI | GKGCMC | 1 cut(s) | 352 |
| BseYI | CCCAGC | 1 cut(s) | 1724 |
| Bsh1236I | CGCG | 2 cut(s) | 471, 1871 |
| BshFI | GGCC | 2 cut(s) | 81, 3139 |
| BshNI | GGYRCC | 1 cut(s) | 711 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 2963 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2042 |
| BsiSI | CCGG | 2 cut(s) | 1899, 2328 |
| BslFI | GGGAC | 7 cut(s) | 91, 228, 609, 1587, 1685, 1818, 2675 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 63, 117, 987, 1126, 1974, 2334, 3135 |
| BsmAI | GTCTC | 3 cut(s) | 47, 1124, 2744 |
| BsmFI | GGGAC | 7 cut(s) | 91, 228, 609, 1587, 1685, 1818, 2675 |
| BsmI | GAATGC | 2 cut(s) | 1342, 1908 |
| BsnI | GGCC | 2 cut(s) | 81, 3139 |
| BsoBI | CYCGRG | 1 cut(s) | 2042 |
| Bsp1286I | GDGCHC | 4 cut(s) | 90, 352, 2300, 2963 |
| Bsp19I | CCATGG | 1 cut(s) | 1125 |
| BspACI | CCGC | 5 cut(s) | 216, 466, 1869, 1871, 2612 |
| BspANI | GGCC | 2 cut(s) | 81, 3139 |
| BspCNI | CTCAG | 5 cut(s) | 1156, 1948, 2312, 2482, 2514 |
| BspFNI | CGCG | 2 cut(s) | 471, 1871 |
| BspLI | GGNNCC | 6 cut(s) | 207, 214, 713, 1181, 1745, 2012 |
| BspMAI | CTGCAG | 3 cut(s) | 1366, 1860, 2681 |
| BspMI | ACCTGC | 1 cut(s) | 2441 |
| BspPI | GGATC | 8 cut(s) | 200, 213, 869, 1738, 1751, 2070, 2319, 3023 |
| BspQI | GCTCTTC | 2 cut(s) | 1291, 2915 |
| BspT107I | GGYRCC | 1 cut(s) | 711 |
| BspTI | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| BsrBI | CCGCTC | 1 cut(s) | 466 |
| BsrDI | GCAATG | 5 cut(s) | 186, 682, 906, 1962, 2518 |
| BsrI | ACTGG | 6 cut(s) | 978, 1033, 1942, 2554, 3150, 3180 |
| BssECI | CCNNGG | 4 cut(s) | 483, 1125, 1869, 2293 |
| BssNAI | GTATAC | 1 cut(s) | 2904 |
| BssNI | GRCGYC | 1 cut(s) | 712 |
| BssT1I | CCWWGG | 1 cut(s) | 1125 |
| Bst1107I | GTATAC | 1 cut(s) | 2904 |
| Bst2UI | CCWGG | 5 cut(s) | 83, 210, 485, 2294, 2985 |
| Bst4CI | ACNGT | 8 cut(s) | 429, 600, 664, 1210, 1291, 2582, 2764, 2971 |
| Bst6I | CTCTTC | 7 cut(s) | 312, 483, 488, 1291, 1380, 1772, 2915 |
| BstACI | GRCGYC | 1 cut(s) | 712 |
| BstAFI | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1346 |
| BstC8I | GCNNGC | 5 cut(s) | 384, 926, 1986, 2090, 2260 |
| BstDEI | CTNAG | 8 cut(s) | 587, 873, 1164, 1818, 1956, 2299, 2490, 2501 |
| BstDSI | CCRYGG | 2 cut(s) | 1125, 1869 |
| BstEII | GGTNACC | 1 cut(s) | 2708 |
| BstF5I | GGATG | 4 cut(s) | 1174, 2550, 3129, 3184 |
| BstFNI | CGCG | 2 cut(s) | 471, 1871 |
| BstH2I | RGCGCY | 4 cut(s) | 653, 715, 2128, 2509 |
| BstHHI | GCGC | 6 cut(s) | 274, 471, 652, 714, 2127, 2508 |
| BstMAI | GTCTC | 3 cut(s) | 47, 1124, 2744 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 188, 413, 765, 1346, 1730, 1990, 2503 |
| BstNI | CCWGG | 5 cut(s) | 83, 210, 485, 2294, 2985 |
| BstNSI | RCATGY | 2 cut(s) | 386, 390 |
| BstPI | GGTNACC | 1 cut(s) | 2708 |
| BstSCI | CCNGG | 6 cut(s) | 81, 208, 483, 2292, 2327, 2983 |
| BstSFI | CTRYAG | 4 cut(s) | 1362, 1856, 2345, 2677 |
| BstSLI | GKGCMC | 1 cut(s) | 352 |
| BstUI | CGCG | 2 cut(s) | 471, 1871 |
| BstV2I | GAAGAC | 6 cut(s) | 908, 1262, 1555, 1776, 1805, 2943 |
| BstX2I | RGATCY | 6 cut(s) | 31, 205, 1743, 2062, 2324, 3028 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2390 |
| BstYI | RGATCY | 6 cut(s) | 31, 205, 1743, 2062, 2324, 3028 |
| BstZ17I | GTATAC | 1 cut(s) | 2904 |
| BsuI | GTATCC | 2 cut(s) | 940, 1482 |
| BsuRI | GGCC | 2 cut(s) | 81, 3139 |
| BtgI | CCRYGG | 2 cut(s) | 1125, 1869 |
| BtgZI | GCGATG | 1 cut(s) | 2239 |
| BtrI | CACGTC | 1 cut(s) | 1774 |
| BtsCI | GGATG | 4 cut(s) | 1174, 2550, 3129, 3184 |
| BtsIMutI | CAGTG | 3 cut(s) | 1188, 1935, 2760 |
| BveI | ACCTGC | 1 cut(s) | 2441 |
| Cac8I | GCNNGC | 5 cut(s) | 384, 926, 1986, 2090, 2260 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2508, 2580 |
| CfoI | GCGC | 6 cut(s) | 274, 471, 652, 714, 2127, 2508 |
| Cfr13I | GGNCC | 1 cut(s) | 79 |
| Cfr42I | CCGCGG | 1 cut(s) | 1872 |
| Csp6I | GTAC | 3 cut(s) | 1919, 2460, 3166 |
| CviQI | GTAC | 3 cut(s) | 1919, 2460, 3166 |
| DdeI | CTNAG | 8 cut(s) | 587, 873, 1164, 1818, 1956, 2299, 2490, 2501 |
| DinI | GGCGCC | 1 cut(s) | 713 |
| Eam1104I | CTCTTC | 7 cut(s) | 312, 483, 488, 1291, 1380, 1772, 2915 |
| EarI | CTCTTC | 7 cut(s) | 312, 483, 488, 1291, 1380, 1772, 2915 |
| Eco130I | CCWWGG | 1 cut(s) | 1125 |
| Eco24I | GRGCYC | 1 cut(s) | 2300 |
| Eco32I | GATATC | 2 cut(s) | 512, 1785 |
| Eco57I | CTGAAG | 5 cut(s) | 1199, 1497, 2687, 2886, 2939 |
| Eco88I | CYCGRG | 1 cut(s) | 2042 |
| Eco91I | GGTNACC | 1 cut(s) | 2708 |
| EcoO65I | GGTNACC | 1 cut(s) | 2708 |
| EcoRI | GAATTC | 1 cut(s) | 1053 |
| EcoRII | CCWGG | 5 cut(s) | 81, 208, 483, 2292, 2983 |
| EcoRV | GATATC | 2 cut(s) | 512, 1785 |
| EcoT14I | CCWWGG | 1 cut(s) | 1125 |
| EcoT22I | ATGCAT | 2 cut(s) | 388, 1342 |
| EcoT38I | GRGCYC | 1 cut(s) | 2300 |
| EgeI | GGCGCC | 1 cut(s) | 713 |
| EheI | GGCGCC | 1 cut(s) | 713 |
| ErhI | CCWWGG | 1 cut(s) | 1125 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 485, 517, 2011, 2043, 2187, 2219, 2859, 2891 |
| FaqI | GGGAC | 7 cut(s) | 91, 228, 609, 1587, 1685, 1818, 2675 |
| FauNDI | CATATG | 1 cut(s) | 2366 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| FblI | GTMKAC | 1 cut(s) | 2903 |
| FokI | GGATG | 3 cut(s) | 1181, 2537, 3116 |
| FriOI | GRGCYC | 1 cut(s) | 2300 |
| FspBI | CTAG | 7 cut(s) | 1101, 1277, 1613, 2033, 2192, 2696, 3141 |
| GlaI | GCGC | 6 cut(s) | 273, 470, 651, 713, 2126, 2507 |
| GsaI | CCCAGC | 1 cut(s) | 1728 |
| GsuI | CTGGAG | 1 cut(s) | 104 |
| HaeII | RGCGCY | 4 cut(s) | 653, 715, 2128, 2509 |
| HaeIII | GGCC | 2 cut(s) | 81, 3139 |
| HapII | CCGG | 2 cut(s) | 1899, 2328 |
| HhaI | GCGC | 6 cut(s) | 274, 471, 652, 714, 2127, 2508 |
| Hin1I | GRCGYC | 1 cut(s) | 712 |
| Hin6I | GCGC | 6 cut(s) | 272, 469, 650, 712, 2125, 2506 |
| HinP1I | GCGC | 6 cut(s) | 272, 469, 650, 712, 2125, 2506 |
| HincII | GTYRAC | 1 cut(s) | 1624 |
| HindII | GTYRAC | 1 cut(s) | 1624 |
| HindIII | AAGCTT | 1 cut(s) | 2086 |
| HpaI | GTTAAC | 1 cut(s) | 1624 |
| HpaII | CCGG | 2 cut(s) | 1899, 2328 |
| HphI | GGTGA | 4 cut(s) | 1550, 2108, 2720, 2998 |
| Hpy166II | GTNNAC | 3 cut(s) | 754, 1624, 2904 |
| Hpy8I | GTNNAC | 3 cut(s) | 754, 1624, 2904 |
| Hpy99I | CGWCG | 1 cut(s) | 29 |
| HpyAV | CCTTC | 9 cut(s) | 586, 1370, 1472, 1564, 2037, 2159, 2821, 2840, 2885 |
| HpyCH4III | ACNGT | 8 cut(s) | 429, 600, 664, 1210, 1291, 2582, 2764, 2971 |
| HpyCH4IV | ACGT | 6 cut(s) | 252, 642, 1773, 2113, 2409, 2906 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 188, 413, 765, 1346, 1730, 1990, 2503 |
| HpyF3I | CTNAG | 8 cut(s) | 587, 873, 1164, 1818, 1956, 2299, 2490, 2501 |
| HpySE526I | ACGT | 6 cut(s) | 252, 642, 1773, 2113, 2409, 2906 |
| Hsp92I | GRCGYC | 1 cut(s) | 712 |
| HspAI | GCGC | 6 cut(s) | 272, 469, 650, 712, 2125, 2506 |
| KasI | GGCGCC | 1 cut(s) | 711 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| KspAI | GTTAAC | 1 cut(s) | 1624 |
| KspI | CCGCGG | 1 cut(s) | 1872 |
| LguI | GCTCTTC | 2 cut(s) | 1291, 2915 |
| LmnI | GCTCC | 8 cut(s) | 9, 85, 412, 1179, 1871, 2393, 2418, 2478 |
| LweI | GCATC | 6 cut(s) | 488, 937, 1146, 2525, 2661, 3109 |
| MaeI | CTAG | 7 cut(s) | 1101, 1277, 1613, 2033, 2192, 2696, 3141 |
| MaeII | ACGT | 6 cut(s) | 252, 642, 1773, 2113, 2409, 2906 |
| MaeIII | GTNAC | 7 cut(s) | 1285, 1879, 2109, 2114, 2602, 2708, 2764 |
| MbiI | CCGCTC | 1 cut(s) | 466 |
| MfeI | CAATTG | 1 cut(s) | 1680 |
| MflI | RGATCY | 6 cut(s) | 31, 205, 1743, 2062, 2324, 3028 |
| MhlI | GDGCHC | 4 cut(s) | 90, 352, 2300, 2963 |
| Mly113I | GGCGCC | 1 cut(s) | 712 |
| MlyI | GAGTC | 4 cut(s) | 1367, 1967, 2147, 2746 |
| MmeI | TCCRAC | 7 cut(s) | 414, 680, 751, 1030, 1273, 1988, 2892 |
| Mph1103I | ATGCAT | 2 cut(s) | 388, 1342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 441 |
| MspA1I | CMGCKG | 1 cut(s) | 1871 |
| MspCI | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| MspI | CCGG | 2 cut(s) | 1899, 2328 |
| MspR9I | CCNGG | 6 cut(s) | 83, 210, 485, 2294, 2329, 2985 |
| MunI | CAATTG | 1 cut(s) | 1680 |
| Mva1269I | GAATGC | 2 cut(s) | 1342, 1908 |
| MvaI | CCWGG | 5 cut(s) | 83, 210, 485, 2294, 2985 |
| MvnI | CGCG | 2 cut(s) | 471, 1871 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 188, 413, 765, 1346, 1730, 1990, 2503 |
| NarI | GGCGCC | 1 cut(s) | 712 |
| NciI | CCSGG | 1 cut(s) | 2329 |
| NcoI | CCATGG | 1 cut(s) | 1125 |
| NdeI | CATATG | 1 cut(s) | 2366 |
| NlaIV | GGNNCC | 6 cut(s) | 207, 214, 713, 1181, 1745, 2012 |
| NmeAIII | GCCGAG | 1 cut(s) | 1145 |
| NmuCI | GTSAC | 3 cut(s) | 1285, 2114, 2708 |
| NsiI | ATGCAT | 2 cut(s) | 388, 1342 |
| NspI | RCATGY | 2 cut(s) | 386, 390 |
| PacI | TTAATTAA | 1 cut(s) | 606 |
| PaeI | GCATGC | 1 cut(s) | 386 |
| PaeR7I | CTCGAG | 1 cut(s) | 2042 |
| PciSI | GCTCTTC | 2 cut(s) | 1291, 2915 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 468 |
| PctI | GAATGC | 2 cut(s) | 1342, 1908 |
| PdmI | GAANNNNTTC | 1 cut(s) | 441 |
| PflFI | GACNNNGTC | 1 cut(s) | 1439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3135 |
| PfoI | TCCNGGA | 1 cut(s) | 208 |
| PleI | GAGTC | 4 cut(s) | 1366, 1966, 2147, 2746 |
| PluTI | GGCGCC | 1 cut(s) | 715 |
| PpsI | GAGTC | 4 cut(s) | 1366, 1966, 2147, 2746 |
| Psp1406I | AACGTT | 1 cut(s) | 252 |
| Psp6I | CCWGG | 5 cut(s) | 81, 208, 483, 2292, 2983 |
| PspEI | GGTNACC | 1 cut(s) | 2708 |
| PspFI | CCCAGC | 1 cut(s) | 1724 |
| PspGI | CCWGG | 5 cut(s) | 81, 208, 483, 2292, 2983 |
| PspN4I | GGNNCC | 6 cut(s) | 207, 214, 713, 1181, 1745, 2012 |
| PspPI | GGNCC | 1 cut(s) | 79 |
| PspXI | VCTCGAGB | 1 cut(s) | 2042 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 205, 237 |
| PstI | CTGCAG | 3 cut(s) | 1366, 1860, 2681 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2508, 2580 |
| PsuI | RGATCY | 6 cut(s) | 31, 205, 1743, 2062, 2324, 3028 |
| PsyI | GACNNNGTC | 1 cut(s) | 1439 |
| RsaI | GTAC | 3 cut(s) | 1920, 2461, 3167 |
| RsaNI | GTAC | 3 cut(s) | 1919, 2460, 3166 |
| SacII | CCGCGG | 1 cut(s) | 1872 |
| SapI | GCTCTTC | 2 cut(s) | 1291, 2915 |
| Sau96I | GGNCC | 1 cut(s) | 79 |
| ScaI | AGTACT | 1 cut(s) | 1920 |
| SchI | GAGTC | 4 cut(s) | 1367, 1967, 2147, 2746 |
| ScrFI | CCNGG | 6 cut(s) | 83, 210, 485, 2294, 2329, 2985 |
| SduI | GDGCHC | 4 cut(s) | 90, 352, 2300, 2963 |
| SfaNI | GCATC | 6 cut(s) | 488, 937, 1146, 2525, 2661, 3109 |
| SfcI | CTRYAG | 4 cut(s) | 1362, 1856, 2345, 2677 |
| SfoI | GGCGCC | 1 cut(s) | 713 |
| Sfr274I | CTCGAG | 1 cut(s) | 2042 |
| Sfr303I | CCGCGG | 1 cut(s) | 1872 |
| SgrBI | CCGCGG | 1 cut(s) | 1872 |
| SlaI | CTCGAG | 1 cut(s) | 2042 |
| SmlI | CTYRAG | 9 cut(s) | 229, 417, 1303, 1595, 1972, 2042, 2120, 2623, 2885 |
| SmoI | CTYRAG | 9 cut(s) | 229, 417, 1303, 1595, 1972, 2042, 2120, 2623, 2885 |
| SphI | GCATGC | 1 cut(s) | 386 |
| SsiI | CCGC | 5 cut(s) | 216, 466, 1869, 1871, 2612 |
| SspDI | GGCGCC | 1 cut(s) | 711 |
| SspI | AATATT | 2 cut(s) | 2314, 2389 |
| SspMI | CTAG | 7 cut(s) | 1101, 1277, 1613, 2033, 2192, 2696, 3141 |
| StyD4I | CCNGG | 6 cut(s) | 81, 208, 483, 2292, 2327, 2983 |
| StyI | CCWWGG | 1 cut(s) | 1125 |
| TaaI | ACNGT | 8 cut(s) | 429, 600, 664, 1210, 1291, 2582, 2764, 2971 |
| TaiI | ACGT | 6 cut(s) | 255, 645, 1776, 2116, 2412, 2909 |
| TaqI | TCGA | 3 cut(s) | 336, 2043, 3014 |
| TatI | WGTACW | 2 cut(s) | 1918, 3165 |
| TauI | GCSGC | 1 cut(s) | 469 |
| TscAI | CASTG | 3 cut(s) | 1195, 1942, 2767 |
| TseFI | GTSAC | 3 cut(s) | 1285, 2114, 2708 |
| Tsp45I | GTSAC | 3 cut(s) | 1285, 2114, 2708 |
| TspGWI | ACGGA | 1 cut(s) | 1003 |
| TspRI | CASTG | 3 cut(s) | 1195, 1942, 2767 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1439 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3135 |
| Vha464I | CTTAAG | 3 cut(s) | 1595, 2120, 2885 |
| XapI | RAATTY | 8 cut(s) | 883, 1053, 1227, 1259, 1749, 1941, 1978, 2635 |
| XbaI | TCTAGA | 2 cut(s) | 2032, 2191 |
| XceI | RCATGY | 2 cut(s) | 386, 390 |
| XhoI | CTCGAG | 1 cut(s) | 2042 |
| XmiI | GTMKAC | 1 cut(s) | 2903 |
| XmnI | GAANNNNTTC | 1 cut(s) | 441 |
| XspI | CTAG | 7 cut(s) | 1101, 1277, 1613, 2033, 2192, 2696, 3141 |
| ZrmI | AGTACT | 1 cut(s) | 1920 |
| Zsp2I | ATGCAT | 2 cut(s) | 388, 1342 |