Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011520

Physical Location & Seq

Genomic Coordinates Forward (+)

14125645 .. 14127015

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGTTGGCTGCAGCCATTGCCGGCATTTTGGGTTGTGCATGTCCCAAAAATGTTATACAAGAAACAACAGGGCAGCATTGCAAGTATCTTCATTACAATGCAAAAGCAAAGATAGATGAGTTGAGGTCGAAAATGGAGGAATTAAGAGCACTTGTGGCGGATGTAAAAAGAAAACTGGAGGATACATGTCTCCAAGAAGGAAAGGAACCCACAGAACAGGTGAAGTTGTGGTTGAGACATGTTCAAAGCTTTGATAATGAAAAGCTGAATAAGCTACTATGTTGGGAAGAGGAAAGATGTTTATGTGGGTGTCTTCCAGATTATTGCTCTCGAATGAAGTTGGGGAAACTTATCGAAAGGAGGATTCAGAAGGTGGATGAGCTTCTCAGAAGAGGACAGTTTCAAGATGATGCATTGGCTCACTTGTTGTTAGAGAATATAAAGATGCTTCCTATGACAGTAGCGGTGGGTAATGAAACAACTAAAAGAAAGTTGGAAGAGATATGGGAGCATTTAATGGCAGGTTATGAAGTGCAAAGAATTGGTGTTTATGGAATGGGTGGGGTTGGAAAGACAACAATTCTGAAAGAAATAAATAACAGACTCAAAAAAGAGATGACAGAAGGGATGATCACTTGCTTTGACAATGTTGTTTGGGTCACAATACCAAAGGAGTCCAACCCCGAGAAATTGCAAATGGCGATTGCCAAAGCTGTGAGGTTGAATCTCCCTGAAGACTGGAATATGATGGACAAGGCAGCAGAGTTGCTGAAAGCATTACAACGAAGGAAGAGGCTTTTGCTAATTTTTGATGATGTATGGACACCATTTTCATTGGAAGATATTGGGATTCCTGCACCTACCAGGGCCAATGGCTGCAAGCTCATATTAACTACTAGATCATTAAAGGTGTGTCGAGGCATGGAGACAAACAAAGAAGTGGAGGTAAAAGTGCTTTCTGACGAAGAATCTTGGACCCTTTTCACTGATAAAGTTGGTTCTGTTGTGTTACAAAATCCTGAAATTAAAATTATTGCAAGGGAAATAGCAAAAGAATTTGGTGGTCTTCCACTAGCCATTATCACAGTTGGAAGAGCCTTGAGAAAAGTAAGTAATGAAATTGAGTGGCAAAATGCATTGACAGCCTTAAGATGTTCTGCAGCTAATGTGGAAGGCATGGAAGAGCTGGTGTATTCTCGTTTGAGATTCAGTTATGAAAGATTAAAGGATGACACTACTCGATCGTGTTTTCTGTATTGTGCATTGTATCCTGAAGATCATCAAATTGAAGCCAAAGAGCTGATAGAATATTGGATGTGGGGGAAGGATAGAGGCCAACATATGGAAGGGAGAAATGATTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

456

Amino Acids

52.36

Weight (kDa)

6.7

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	164 - 334	2e-42	NB-ARC domain
TniB	PF05621	165 - 274	1.3e-06	Bacterial TniB protein
AAA_22	PF13401	184 - 274	8.1e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06550
rosa_chinensis	RchiOBHm_Chr6g0258471 RchiOBHm_Chr6g0258491
rosa_laevigata	RLG00000014608
rosa_multiflora	Rmu_sc0001663.1_g000003 Rmu_sc0007367.1_g000020 Rmu_sc0027621.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437470 Rroxscaffold_7G00205650 Rroxscaffold_7G00205720
rosa_rugosa	Rorug05G0581900 Rorug05G0581900 Rorug05G0581900
rosa_samantha	Rh6AG098300 Rh6BG089800 Rh6BG089900 Rh6BG090000 Rh6CG086800 Rh6DG081100
rosa_wichuraiana	Rw6G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	1345
AciI	CCGC	2 cut(s)	161, 467
AcsI	RAATTY	1 cut(s)	1058
AcuI	CTGAAG	2 cut(s)	756, 1296
AfiI	CCNNNNNNNGG	1 cut(s)	1345
AflII	CTTAAG	1 cut(s)	1150
AflIII	ACRYGT	2 cut(s)	188, 241
AgsI	TTSAA	4 cut(s)	248, 407, 727, 1292
AjnI	CCWGG	1 cut(s)	866
AluBI	AGCT	9 cut(s)	252, 268, 277, 385, 716, 886, 1166, 1189, 1303
AluI	AGCT	9 cut(s)	252, 268, 277, 385, 716, 886, 1166, 1189, 1303
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	197, 232, 923
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	870, 1336
ApeKI	GCWGC	6 cut(s)	11, 14, 76, 761, 879, 1163
ApoI	RAATTY	1 cut(s)	1058
AspS9I	GGNCC	2 cut(s)	870, 978
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	978
BbsI	GAAGAC	3 cut(s)	308, 744, 1061
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	26, 88, 773, 866, 1175
BccI	CCATC	1 cut(s)	745
BciT130I	CCWGG	1 cut(s)	868
BciVI	GTATCC	2 cut(s)	178, 1281
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	3 cut(s)	197, 232, 923
BfaI	CTAG	2 cut(s)	900, 1076
BfmI	CTRYAG	2 cut(s)	12, 1161
BfrI	CTTAAG	1 cut(s)	1150
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	178, 1281
BisI	GCNGC	6 cut(s)	12, 15, 77, 762, 880, 1164
BlsI	GCNGC	6 cut(s)	13, 16, 78, 763, 881, 1165
Bme1390I	CCNGG	1 cut(s)	868
Bme18I	GGWCC	1 cut(s)	978
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	870, 978
BmiI	GGNNCC	2 cut(s)	210, 980
BmrFI	CCNGG	1 cut(s)	868
BmsI	GCATC	2 cut(s)	403, 438
BpiI	GAAGAC	3 cut(s)	308, 744, 1061
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	1123
BsaJI	CCNNGG	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	1 cut(s)	1345
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	183, 746
Bse3DI	GCAATG	2 cut(s)	18, 79
BseBI	CCWGG	1 cut(s)	868
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	5 cut(s)	169, 385, 636, 1237, 1323
BseLI	CCNNNNNNNGG	1 cut(s)	1345
BseMI	GCAATG	2 cut(s)	18, 79
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	2 cut(s)	183, 746
BseXI	GCAGC	5 cut(s)	26, 88, 773, 866, 1175
BsgI	GTGCAG	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	872, 1338
BsiEI	CGRYCG	1 cut(s)	1247
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	1345
BsmAI	GTCTC	3 cut(s)	197, 232, 923
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	872, 1338
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	633, 902, 1244, 1279
BspACI	CCGC	2 cut(s)	161, 467
BspANI	GGCC	2 cut(s)	872, 1338
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	210, 980
BspMAI	CTGCAG	2 cut(s)	16, 1165
BspMI	ACCTGC	1 cut(s)	515
BspQI	GCTCTTC	2 cut(s)	1090, 1179
BspTI	CTTAAG	1 cut(s)	1150
BsrDI	GCAATG	2 cut(s)	18, 79
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	183, 746
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	4 cut(s)	633, 902, 1244, 1279
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	3 cut(s)	402, 463, 1090
Bst6I	CTCTTC	6 cut(s)	285, 388, 495, 788, 1090, 1179
BstAFI	CTTAAG	1 cut(s)	1150
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	25, 884
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	5 cut(s)	169, 385, 636, 1237, 1323
BstKTI	GATC	4 cut(s)	636, 905, 1247, 1282
BstMAI	GTCTC	3 cut(s)	197, 232, 923
BstMBI	GATC	4 cut(s)	633, 902, 1244, 1279
BstMCI	CGRYCG	1 cut(s)	1247
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 158, 274, 1145
BstNI	CCWGG	1 cut(s)	868
BstNSI	RCATGY	3 cut(s)	45, 192, 245
BstSCI	CCNGG	1 cut(s)	866
BstSFI	CTRYAG	2 cut(s)	12, 1161
BstV1I	GCAGC	5 cut(s)	26, 88, 773, 866, 1175
BstV2I	GAAGAC	3 cut(s)	308, 744, 1061
BsuI	GTATCC	2 cut(s)	178, 1281
BsuRI	GGCC	2 cut(s)	872, 1338
BtsCI	GGATG	5 cut(s)	169, 385, 636, 1237, 1323
BtsIMutI	CAGTG	1 cut(s)	987
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	25, 884
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	870, 978
CviAII	CATG	5 cut(s)	42, 189, 242, 925, 1180
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	4 cut(s)	635, 904, 1246, 1281
DpnII	GATC	4 cut(s)	633, 902, 1244, 1279
Eam1104I	CTCTTC	6 cut(s)	285, 388, 495, 788, 1090, 1179
EarI	CTCTTC	6 cut(s)	285, 388, 495, 788, 1090, 1179
EciI	GGCGGA	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	978
Eco57I	CTGAAG	2 cut(s)	756, 1296
Eco88I	CYCGRG	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	866
EcoT22I	ATGCAT	2 cut(s)	418, 1141
FaeI	CATG	5 cut(s)	45, 192, 245, 928, 1183
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	5 cut(s)	41, 188, 241, 924, 1179
FauNDI	CATATG	1 cut(s)	1344
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	6 cut(s)	12, 15, 77, 762, 880, 1164
FokI	GGATG	5 cut(s)	176, 392, 643, 1244, 1330
Fsp4HI	GCNGC	6 cut(s)	12, 15, 77, 762, 880, 1164
FspBI	CTAG	2 cut(s)	900, 1076
GluI	GCNGC	6 cut(s)	12, 15, 77, 762, 880, 1164
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	872, 1338
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	5 cut(s)	45, 192, 245, 928, 1183
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	7 cut(s)	367, 606, 677, 727, 853, 971, 1209
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	372, 392, 588, 964
Hpy188III	TCNNGA	5 cut(s)	320, 333, 407, 1022, 1274
HpyAV	CCTTC	7 cut(s)	194, 367, 620, 783, 1169, 1321, 1343
HpyCH4III	ACNGT	3 cut(s)	402, 463, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 158, 274, 1145
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	45, 192, 245, 928, 1183
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	633, 902, 1244, 1279
LguI	GCTCTTC	2 cut(s)	1090, 1179
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	5 cut(s)	26, 88, 773, 866, 1175
LweI	GCATC	2 cut(s)	403, 438
MaeI	CTAG	2 cut(s)	900, 1076
MaeIII	GTNAC	2 cut(s)	661, 1011
MalI	GATC	4 cut(s)	635, 904, 1246, 1281
MboI	GATC	4 cut(s)	633, 902, 1244, 1279
MhlI	GDGCHC	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	600, 686
MmeI	TCCRAC	4 cut(s)	477, 550, 705, 1072
Mph1103I	ATGCAT	2 cut(s)	418, 1141
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	7 cut(s)	146, 518, 893, 908, 1029, 1151, 1226
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	1150
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	868
MwoI	GCNNNNNNNGC	4 cut(s)	20, 158, 274, 1145
NaeI	GCCGGC	1 cut(s)	25
NdeI	CATATG	1 cut(s)	1344
NdeII	GATC	4 cut(s)	633, 902, 1244, 1279
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	5 cut(s)	45, 192, 245, 928, 1183
NlaIV	GGNNCC	2 cut(s)	210, 980
NmuCI	GTSAC	1 cut(s)	661
NsiI	ATGCAT	2 cut(s)	418, 1141
NspI	RCATGY	3 cut(s)	45, 192, 245
PciI	ACATGT	2 cut(s)	188, 241
PciSI	GCTCTTC	2 cut(s)	1090, 1179
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	5 cut(s)	367, 727, 853, 971, 1209
PflMI	CCANNNNNTGG	1 cut(s)	1345
PkrI	GCNGC	6 cut(s)	13, 16, 78, 763, 881, 1165
Ple19I	CGATCG	1 cut(s)	1247
PleI	GAGTC	2 cut(s)	600, 685
PpsI	GAGTC	2 cut(s)	600, 685
PscI	ACATGT	2 cut(s)	188, 241
Psp6I	CCWGG	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	2 cut(s)	210, 980
PspPI	GGNCC	2 cut(s)	870, 978
PstI	CTGCAG	2 cut(s)	16, 1165
PvuI	CGATCG	1 cut(s)	1247
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	2 cut(s)	1090, 1179
SaqAI	TTAA	7 cut(s)	146, 518, 893, 908, 1029, 1151, 1226
SatI	GCNGC	6 cut(s)	12, 15, 77, 762, 880, 1164
Sau3AI	GATC	4 cut(s)	633, 902, 1244, 1279
Sau96I	GGNCC	2 cut(s)	870, 978
SchI	GAGTC	2 cut(s)	600, 686
ScrFI	CCNGG	1 cut(s)	868
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	403, 438
SfcI	CTRYAG	2 cut(s)	12, 1161
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	1102, 1150
SmoI	CTYRAG	2 cut(s)	1102, 1150
SsiI	CCGC	2 cut(s)	161, 467
SspI	AATATT	1 cut(s)	1313
SspMI	CTAG	2 cut(s)	900, 1076
StyD4I	CCNGG	1 cut(s)	866
TaaI	ACNGT	3 cut(s)	402, 463, 1090
TaqI	TCGA	5 cut(s)	131, 334, 357, 919, 1243
TfiI	GAWTC	5 cut(s)	367, 727, 853, 971, 1209
Tru1I	TTAA	7 cut(s)	146, 518, 893, 908, 1029, 1151, 1226
Tru9I	TTAA	7 cut(s)	146, 518, 893, 908, 1029, 1151, 1226
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	6 cut(s)	11, 14, 76, 761, 879, 1163
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	8 cut(s)	83, 276, 353, 492, 546, 825, 1134, 1233
TspRI	CASTG	1 cut(s)	994
Van91I	CCANNNNNTGG	1 cut(s)	1345
Vha464I	CTTAAG	1 cut(s)	1150
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	1 cut(s)	1058
XceI	RCATGY	3 cut(s)	45, 192, 245
XspI	CTAG	2 cut(s)	900, 1076
Zsp2I	ATGCAT	2 cut(s)	418, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.