Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027621.1

Orthogroup ID

OG0011520

Physical Location & Seq

Genomic Coordinates Forward (+)

220 .. 2098

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

atggaggaaaagaagatcacttgttttgacaatgtgatctggatcacaatgcctaagagttcaaattccgaaaaattgcagaagaccattgcaaaatctgtgagcttgcatctccttgatcattgggatacaatggaaaacgcagcagccttactggaagccttaacacggaggaagaaacttttgctgatttttgatgatgtttggactggattttctttagaaaatgttggaattcctgaaccaaccagagaaaatggctgcaagttcatattaactactagatcgttaagggtgtgccgagccatggagacagacaaagaagtggaggtaaagatgctttctgaggatgaaacatggagccttttcactgaaaaagttggttctactgttctgcagaaaacagaaatttatgttcttgcaaggaaagtagcgaaagaatttggtggtcttccactagccattgtcacagtcggaagagccttgagaaaagtagagaacgaaatggggtggcagaatgcattgactgcattaagagagtctgcagctaatgtggaaggcatggaagagatggtgttttcatgtttgagattcagttatgaaagattagatgatgacattgtccgatcatgtttcctatattgtgccttgtatcctgaaggtcatcatattgaagcaaaagagttaattgaaaattggttgtgggagggtttgctcggtgatgtaggaagactacaagctaatatatggaagggacaaatgattttggctaatcttaaggattcttgtctgctagatcatgttaacgcagagagtggcattgaatgtgtcaaaatgcacgacttaattagggacatggcaattgatattacaagaaaaagtagtcatgtttgccttatcagagctgggattgcagtagaaaggatccaaattcaaagtgaggagattgaagacgtgaagaggatatccatgatgtataatgatttgatatgtcttcctaagaatctatcttgtcccaagttatcctctttgctgctgcagtattgctccgcggacaaagtaactgatctttgttttaccggaatgcagaatcttaaagtacttgacttgtctttcactggaatttcctgtctgtctgagtccattgccaacttgaggaatttgcgtgccttgctattgcgtagttgttggaacctaacaaggctgccttctctagaattgctcgaggctctgtgggatttggatctgtcttatactcccatcagaagcttgccatttggaatggaaatgttacgtcaccttaagcgcctgaatctttcttatacagaattggactcgtttccagaaggactactaaccactctcaattttctagaagaattgcttttgtttggttctcaatgtgcgtttggattagaacttgtcaatgaactcatcgcctgcataaacatcgttgttcttgaagtgcaattccagggctcagaagtgtttaatatttatacaagatccgggcattggaataatctacagagtttcagatttgacatatgctcattcttttaccacaatattggagcaataaggaagcacgttgaaaggagcaagagtataacctgcataggaagtttctttgtgaatggtactcgtcttttgctccctgattgcacttctgagctgcaactcaggcgctgcaatgatgttgatatattgtcaagatgcttatcagattccatccagttgaaaaaatgtgctgtcagatactgggtgttgtccctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_4 LRR_8 NB-ARC

Protein Analysis

592

Amino Acids

67.58

Weight (kDa)

5.65

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06550
rosa_chinensis	RchiOBHm_Chr6g0258471 RchiOBHm_Chr6g0258491
rosa_laevigata	RLG00000014608
rosa_multiflora	Rmu_sc0001663.1_g000003 Rmu_sc0007367.1_g000020 Rmu_sc0027621.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437470 Rroxscaffold_7G00205650 Rroxscaffold_7G00205720
rosa_rugosa	Rorug05G0581900 Rorug05G0581900 Rorug05G0581900
rosa_samantha	Rh6AG098300 Rh6BG089800 Rh6BG089900 Rh6BG090000 Rh6CG086800 Rh6DG081100
rosa_wichuraiana	Rw6G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1622
AccII	CGCG	1 cut(s)	1052
AciI	CCGC	2 cut(s)	1050, 1052
AclWI	GGATC	5 cut(s)	50, 919, 932, 1251, 1500
AcsI	RAATTY	7 cut(s)	64, 234, 408, 440, 930, 1122, 1159
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	2 cut(s)	1101, 1642
AfiI	CCNNNNNNNGG	4 cut(s)	168, 307, 1155, 1515
AflII	CTTAAG	2 cut(s)	776, 1301
AgsI	TTSAA	9 cut(s)	63, 674, 692, 824, 935, 950, 1463, 1595, 1741
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	1 cut(s)	1473
AluBI	AGCT	6 cut(s)	105, 548, 740, 905, 1269, 1675
AluI	AGCT	6 cut(s)	105, 548, 740, 905, 1269, 1675
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	5 cut(s)	50, 919, 932, 1251, 1500
AlwNI	CAGNNNCTG	2 cut(s)	1689, 1761
Ama87I	CYCGRG	1 cut(s)	1223
ApeKI	GCWGC	9 cut(s)	143, 146, 261, 545, 1033, 1036, 1204, 1675, 1689
ApoI	RAATTY	7 cut(s)	64, 234, 408, 440, 930, 1122, 1159
AspLEI	GCGC	2 cut(s)	1308, 1689
AsuC2I	CCSGG	1 cut(s)	1510
AsuHPI	GGTGA	2 cut(s)	731, 1289
AvaI	CYCGRG	1 cut(s)	1223
BamHI	GGATCC	1 cut(s)	924
BanII	GRGCYC	1 cut(s)	1481
BbsI	GAAGAC	5 cut(s)	89, 443, 736, 957, 986
BbvI	GCAGC	9 cut(s)	155, 158, 248, 557, 1020, 1023, 1191, 1662, 1676
BccI	CCATC	3 cut(s)	565, 1268, 1739
BcgI	CGANNNNNNTGC	2 cut(s)	1432, 1466
BciT130I	CCWGG	1 cut(s)	1475
BciVI	GTATCC	2 cut(s)	121, 663
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	1510
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	6 cut(s)	282, 458, 794, 1214, 1373, 1777
BfmI	CTRYAG	4 cut(s)	395, 543, 1037, 1526
BfoI	RGCGCY	2 cut(s)	1309, 1690
BfrI	CTTAAG	2 cut(s)	776, 1301
BfuAI	ACCTGC	1 cut(s)	1622
BfuI	GTATCC	2 cut(s)	121, 663
BisI	GCNGC	9 cut(s)	144, 147, 262, 546, 1034, 1037, 1205, 1676, 1690
BlsI	GCNGC	9 cut(s)	145, 148, 263, 547, 1035, 1038, 1206, 1677, 1691
BmcAI	AGTACT	1 cut(s)	1101
Bme1390I	CCNGG	2 cut(s)	1475, 1510
BmeT110I	CYCGRG	1 cut(s)	1223
BmgBI	CACGTC	1 cut(s)	955
BmiI	GGNNCC	3 cut(s)	362, 926, 1193
BmrFI	CCNGG	2 cut(s)	1475, 1510
BmrI	ACTGGG	1 cut(s)	1771
BmsI	GCATC	3 cut(s)	118, 327, 1706
BmuI	ACTGGG	1 cut(s)	1771
BpiI	GAAGAC	5 cut(s)	89, 443, 736, 957, 986
BpuEI	CTTGAG	2 cut(s)	505, 1174
BpuMI	CCSGG	1 cut(s)	1510
BsaBI	GATNNNNATC	3 cut(s)	41, 1242, 1720
BsaJI	CCNNGG	3 cut(s)	306, 1050, 1474
BsaWI	WCCGGW	1 cut(s)	1079
BsaXI	ACNNNNNCTCC	2 cut(s)	1591, 1621
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 307, 1155, 1515
Bse1I	ACTGG	5 cut(s)	159, 214, 1123, 1735, 1766
Bse3DI	GCAATG	3 cut(s)	87, 1143, 1699
Bse8I	GATNNNNATC	3 cut(s)	41, 1242, 1720
BseBI	CCWGG	1 cut(s)	1475
BseDI	CCNNGG	3 cut(s)	306, 1050, 1474
BseGI	GGATG	2 cut(s)	355, 1731
BseJI	GATNNNNATC	3 cut(s)	41, 1242, 1720
BseLI	CCNNNNNNNGG	4 cut(s)	168, 307, 1155, 1515
BseMI	GCAATG	3 cut(s)	87, 1143, 1699
BseMII	CTCAG	5 cut(s)	336, 1128, 1494, 1662, 1696
BseNI	ACTGG	5 cut(s)	159, 214, 1123, 1735, 1766
BseRI	GAGGAG	1 cut(s)	956
BseXI	GCAGC	9 cut(s)	155, 158, 248, 557, 1020, 1023, 1191, 1662, 1676
BseYI	CCCAGC	1 cut(s)	905
Bsh1236I	CGCG	1 cut(s)	1052
BsiHKCI	CYCGRG	1 cut(s)	1223
BsiSI	CCGG	2 cut(s)	1080, 1509
BslFI	GGGAC	4 cut(s)	768, 866, 999, 1756
BslI	CCNNNNNNNGG	4 cut(s)	168, 307, 1155, 1515
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	4 cut(s)	768, 866, 999, 1756
BsmI	GAATGC	2 cut(s)	523, 1089
BsoBI	CYCGRG	1 cut(s)	1223
Bsp1286I	GDGCHC	1 cut(s)	1481
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	1050, 1052
BspCNI	CTCAG	5 cut(s)	337, 1129, 1493, 1663, 1695
BspFNI	CGCG	1 cut(s)	1052
BspLI	GGNNCC	3 cut(s)	362, 926, 1193
BspMAI	CTGCAG	3 cut(s)	399, 547, 1041
BspMI	ACCTGC	1 cut(s)	1622
BspPI	GGATC	5 cut(s)	50, 919, 932, 1251, 1500
BspQI	GCTCTTC	1 cut(s)	472
BspTI	CTTAAG	2 cut(s)	776, 1301
BsrDI	GCAATG	3 cut(s)	87, 1143, 1699
BsrI	ACTGG	5 cut(s)	159, 214, 1123, 1735, 1766
BssECI	CCNNGG	3 cut(s)	306, 1050, 1474
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	1475
Bst4CI	ACNGT	2 cut(s)	391, 472
Bst6I	CTCTTC	3 cut(s)	472, 561, 953
BstAFI	CTTAAG	2 cut(s)	776, 1301
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	107, 1167, 1271, 1441
BstDEI	CTNAG	7 cut(s)	54, 345, 999, 1137, 1480, 1671, 1682
BstDSI	CCRYGG	2 cut(s)	306, 1050
BstF5I	GGATG	2 cut(s)	355, 1731
BstFNI	CGCG	1 cut(s)	1052
BstH2I	RGCGCY	2 cut(s)	1309, 1690
BstHHI	GCGC	2 cut(s)	1308, 1689
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	4 cut(s)	527, 911, 1171, 1684
BstNI	CCWGG	1 cut(s)	1475
BstSCI	CCNGG	2 cut(s)	1473, 1508
BstSFI	CTRYAG	4 cut(s)	395, 543, 1037, 1526
BstUI	CGCG	1 cut(s)	1052
BstV1I	GCAGC	9 cut(s)	155, 158, 248, 557, 1020, 1023, 1191, 1662, 1676
BstV2I	GAAGAC	5 cut(s)	89, 443, 736, 957, 986
BstX2I	RGATCY	3 cut(s)	924, 1243, 1505
BstXI	CCANNNNNNTGG	1 cut(s)	1571
BstYI	RGATCY	3 cut(s)	924, 1243, 1505
BsuI	GTATCC	2 cut(s)	121, 663
BtgI	CCRYGG	2 cut(s)	306, 1050
BtgZI	GCGATG	1 cut(s)	1420
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	2 cut(s)	355, 1731
BtsIMutI	CAGTG	2 cut(s)	369, 1116
BveI	ACCTGC	1 cut(s)	1622
Cac8I	GCNNGC	4 cut(s)	107, 1167, 1271, 1441
CaiI	CAGNNNCTG	2 cut(s)	1689, 1761
CfoI	GCGC	2 cut(s)	1308, 1689
Cfr42I	CCGCGG	1 cut(s)	1053
Csp6I	GTAC	2 cut(s)	1100, 1641
CviAII	CATG	9 cut(s)	307, 357, 562, 582, 630, 800, 856, 887, 970
CviQI	GTAC	2 cut(s)	1100, 1641
DdeI	CTNAG	7 cut(s)	54, 345, 999, 1137, 1480, 1671, 1682
Eam1104I	CTCTTC	3 cut(s)	472, 561, 953
EarI	CTCTTC	3 cut(s)	472, 561, 953
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	1481
Eco32I	GATATC	1 cut(s)	966
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	1473
EcoRV	GATATC	1 cut(s)	966
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	1481
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	9 cut(s)	310, 360, 565, 585, 633, 803, 859, 890, 973
FalI	AAGNNNNNCTT	4 cut(s)	1192, 1224, 1368, 1400
FaqI	GGGAC	4 cut(s)	768, 866, 999, 1756
FatI	CATG	9 cut(s)	306, 356, 561, 581, 629, 799, 855, 886, 969
FauNDI	CATATG	1 cut(s)	1547
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	9 cut(s)	144, 147, 262, 546, 1034, 1037, 1205, 1676, 1690
FokI	GGATG	2 cut(s)	362, 1718
FriOI	GRGCYC	1 cut(s)	1481
Fsp4HI	GCNGC	9 cut(s)	144, 147, 262, 546, 1034, 1037, 1205, 1676, 1690
FspBI	CTAG	6 cut(s)	282, 458, 794, 1214, 1373, 1777
GlaI	GCGC	2 cut(s)	1307, 1688
GluI	GCNGC	9 cut(s)	144, 147, 262, 546, 1034, 1037, 1205, 1676, 1690
GsaI	CCCAGC	1 cut(s)	909
HaeII	RGCGCY	2 cut(s)	1309, 1690
HapII	CCGG	2 cut(s)	1080, 1509
HhaI	GCGC	2 cut(s)	1308, 1689
Hin1II	CATG	9 cut(s)	310, 360, 565, 585, 633, 803, 859, 890, 973
Hin6I	GCGC	2 cut(s)	1306, 1687
HinP1I	GCGC	2 cut(s)	1306, 1687
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	1267
HinfI	GANTC	9 cut(s)	539, 591, 782, 1003, 1090, 1139, 1312, 1334, 1727
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	2 cut(s)	1080, 1509
HphI	GGTGA	2 cut(s)	731, 1289
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188III	TCNNGA	8 cut(s)	40, 239, 656, 1214, 1343, 1373, 1460, 1713
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	5 cut(s)	551, 653, 745, 1218, 1340
HpyCH4III	ACNGT	2 cut(s)	391, 472
HpyCH4IV	ACGT	3 cut(s)	954, 1294, 1590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	527, 911, 1171, 1684
HpyF3I	CTNAG	7 cut(s)	54, 345, 999, 1137, 1480, 1671, 1682
HpySE526I	ACGT	3 cut(s)	954, 1294, 1590
Hsp92II	CATG	9 cut(s)	310, 360, 565, 585, 633, 803, 859, 890, 973
HspAI	GCGC	2 cut(s)	1306, 1687
Ksp22I	TGATCA	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	805
KspI	CCGCGG	1 cut(s)	1053
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	5 cut(s)	360, 1052, 1574, 1599, 1659
Lsp1109I	GCAGC	9 cut(s)	155, 158, 248, 557, 1020, 1023, 1191, 1662, 1676
LweI	GCATC	3 cut(s)	118, 327, 1706
MaeI	CTAG	6 cut(s)	282, 458, 794, 1214, 1373, 1777
MaeII	ACGT	3 cut(s)	954, 1294, 1590
MaeIII	GTNAC	4 cut(s)	466, 1060, 1290, 1295
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	3 cut(s)	924, 1243, 1505
MhlI	GDGCHC	1 cut(s)	1481
MlyI	GAGTC	3 cut(s)	548, 1148, 1328
MmeI	TCCRAC	3 cut(s)	211, 454, 1169
MnlI	CCTC	9 cut(s)	165, 322, 340, 700, 934, 954, 1036, 1149, 1219
Mph1103I	ATGCAT	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	1052
MspCI	CTTAAG	2 cut(s)	776, 1301
MspI	CCGG	2 cut(s)	1080, 1509
MspR9I	CCNGG	2 cut(s)	1475, 1510
MunI	CAATTG	1 cut(s)	861
Mva1269I	GAATGC	2 cut(s)	523, 1089
MvaI	CCWGG	1 cut(s)	1475
MvnI	CGCG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	4 cut(s)	527, 911, 1171, 1684
NciI	CCSGG	1 cut(s)	1510
NcoI	CCATGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	1547
NlaIII	CATG	9 cut(s)	310, 360, 565, 585, 633, 803, 859, 890, 973
NlaIV	GGNNCC	3 cut(s)	362, 926, 1193
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	2 cut(s)	466, 1295
NsiI	ATGCAT	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	1223
PciSI	GCTCTTC	1 cut(s)	472
PctI	GAATGC	2 cut(s)	523, 1089
PfeI	GAWTC	6 cut(s)	591, 782, 1003, 1090, 1312, 1727
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	9 cut(s)	145, 148, 263, 547, 1035, 1038, 1206, 1677, 1691
PleI	GAGTC	3 cut(s)	547, 1147, 1328
PpsI	GAGTC	3 cut(s)	547, 1147, 1328
Psp6I	CCWGG	1 cut(s)	1473
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	1 cut(s)	1473
PspN4I	GGNNCC	3 cut(s)	362, 926, 1193
PspXI	VCTCGAGB	1 cut(s)	1223
PstI	CTGCAG	3 cut(s)	399, 547, 1041
PstNI	CAGNNNCTG	2 cut(s)	1689, 1761
PsuI	RGATCY	3 cut(s)	924, 1243, 1505
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	1101, 1642
RsaNI	GTAC	2 cut(s)	1100, 1641
SacII	CCGCGG	1 cut(s)	1053
SapI	GCTCTTC	1 cut(s)	472
SatI	GCNGC	9 cut(s)	144, 147, 262, 546, 1034, 1037, 1205, 1676, 1690
ScaI	AGTACT	1 cut(s)	1101
SchI	GAGTC	3 cut(s)	548, 1148, 1328
ScrFI	CCNGG	2 cut(s)	1475, 1510
SduI	GDGCHC	1 cut(s)	1481
SfaNI	GCATC	3 cut(s)	118, 327, 1706
SfcI	CTRYAG	4 cut(s)	395, 543, 1037, 1526
Sfr274I	CTCGAG	1 cut(s)	1223
Sfr303I	CCGCGG	1 cut(s)	1053
SgrBI	CCGCGG	1 cut(s)	1053
SlaI	CTCGAG	1 cut(s)	1223
SmlI	CTYRAG	5 cut(s)	484, 776, 1153, 1223, 1301
SmoI	CTYRAG	5 cut(s)	484, 776, 1153, 1223, 1301
SsiI	CCGC	2 cut(s)	1050, 1052
SspI	AATATT	2 cut(s)	1495, 1570
SspMI	CTAG	6 cut(s)	282, 458, 794, 1214, 1373, 1777
StyD4I	CCNGG	2 cut(s)	1473, 1508
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	391, 472
TaiI	ACGT	3 cut(s)	957, 1297, 1593
TaqI	TCGA	1 cut(s)	1224
TatI	WGTACW	1 cut(s)	1099
TfiI	GAWTC	6 cut(s)	591, 782, 1003, 1090, 1312, 1727
TscAI	CASTG	2 cut(s)	376, 1123
TseFI	GTSAC	2 cut(s)	466, 1295
TseI	GCWGC	9 cut(s)	143, 146, 261, 545, 1033, 1036, 1204, 1675, 1689
Tsp45I	GTSAC	2 cut(s)	466, 1295
TspDTI	ATGAA	5 cut(s)	259, 366, 570, 615, 1443
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	376, 1123
Tth111I	GACNNNGTC	1 cut(s)	620
Vha464I	CTTAAG	2 cut(s)	776, 1301
XapI	RAATTY	7 cut(s)	64, 234, 408, 440, 930, 1122, 1159
XbaI	TCTAGA	2 cut(s)	1213, 1372
XhoI	CTCGAG	1 cut(s)	1223
XspI	CTAG	6 cut(s)	282, 458, 794, 1214, 1373, 1777
ZrmI	AGTACT	1 cut(s)	1101
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.