Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011520

Physical Location & Seq

Genomic Coordinates Forward (+)

14127119 .. 14128558

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAGTCCTCGATTCATCATTAGTGCTGGGGTTGGAGTAGAAAAGGCATCACTTGGGGAGGAGGGGATTGAACATGTTGAGAGGATTTCAATGATGTATAATGAATTGAAATGCCTTCCTAGCCAACCATTGTGTTCCAAGCTCTCCTCTTTGCTGCTGCAGTATAGCTCTATTGCCAATGATATCTCGCATCGTTTCTTCTGCCACATGCCCAAGCTCAGAGTACTTGATCTGTCTTTCACTGGAATTCTTTGTATACCTGACTCCATTGCTGAGCTAAGCAATTTGCGTGCACTGCTATTGCGTAGTTGTTGGAACCTAAGTAGTCTTCCTTCTCTAGTAACACTCGACGCATTGTGGGTTTTGGATCTTTCATATACTCACATCACAGAATTGCCTCTAGGTATGGAAAAGTTACGCCAGCTTAGGCGCCTCAATCTTTCTTATACTAAATTGGACAGTTTTCCGAAAGGACTGTTAACCACTCTCAATCTGCTAGAAGAATTGCTCCTATATCGTTGTAAGTGTGAATTTGGTTTACAGTTTGTTGATGAACTCATCACCTCAAGAAATATTGTTGTTCTTGAAGTCGAATTCTCAACCTCCAGAGTGTTTGATACGTATTCAAGATCAGGGCATTGGAATCTTCTGCGGAGTTTTAGATCCGGCATATGCTCATATGGCGATGACTTGGGAAAGAACAGTATAGACTACATTGGAAATTTTTTTCTCAGTGCTACTCCTGTTTTGCTCCCTGATCGCACCTATGAACTGCGACTCCTCCACTGCTATGATGTTGATCGATTGTCAAGGTGCTTGTCAGAATCAATGAAGTTGAAAAAATGTGTTATAACACACTGCGATCAAATGGAGAGTATAATAATGACTGGGGAGAACAACTTAAGCTGTCTAAATACGTTAGAGCTTGGTTTCCTACAAAACTTTAAGAGTCTCTACAAGGGTGTCATGCCCTCAGGAGCTCTTGGTGCCCTCAAGATACTGCAAATCAGTTATTGTAACTCTTTAGAGAGCTTACTCAACCCAAGGCTGATTGAACACCTCAGAAACCTCGAAGAACTTTCTGTTGAACATTGTCCAAAATTGGAGGTGTTGATAGAGGAGGAGCAGTCAATCCACAATGCTGAAGTCAGGCTTTCAAGATTGAAGAGCTTAAAGTTGTGTGATTTAAGGGAACTGGAGAGCATTTATAGTGAAGAAGTAATTTGCATATCTCTATGCACCATCACTATTGAGGGATGCAATAAACTGAGGAGACTTCCTTTTAGGATTTCCATAGATGAAGGATATCAGCAAAGACAACCATCAATCACTCCCCCCATAAGAAAAATTAAAGCCGAGCAAGTGTGGTGGGATTCAGTGGAGTTGGCTAATCCCATTGTAAAGACCTTCCTTCAACATAGGCTGGAGTTGCCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

479

Amino Acids

54.73

Weight (kDa)

6.17

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	47 - 104	2.3e-06	Leucine rich repeat
LRR_14	PF23598	73 - 201	1.9e-10	Leucine-rich repeat region
LRR_RPS2	PF23247	316 - 436	8.4e-15	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06550
rosa_chinensis	RchiOBHm_Chr6g0258471 RchiOBHm_Chr6g0258491
rosa_laevigata	RLG00000014608
rosa_multiflora	Rmu_sc0001663.1_g000003 Rmu_sc0007367.1_g000020 Rmu_sc0027621.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437470 Rroxscaffold_7G00205650 Rroxscaffold_7G00205720
rosa_rugosa	Rorug05G0581900 Rorug05G0581900 Rorug05G0581900
rosa_samantha	Rh6AG098300 Rh6BG089800 Rh6BG089900 Rh6BG090000 Rh6CG086800 Rh6DG081100
rosa_wichuraiana	Rw6G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AccB1I	GGYRCC	2 cut(s)	429, 986
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	1 cut(s)	652
AclWI	GGATC	2 cut(s)	375, 657
AcsI	RAATTY	4 cut(s)	246, 530, 593, 721
AcuI	CTGAAG	1 cut(s)	1164
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	1 cut(s)	225
AflII	CTTAAG	1 cut(s)	901
AflIII	ACRYGT	1 cut(s)	73
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
Alw21I	GWGCWC	2 cut(s)	295, 982
Alw26I	GTCTC	2 cut(s)	956, 1267
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	375, 657
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	154, 157
ApoI	RAATTY	4 cut(s)	246, 530, 593, 721
AspLEI	GCGC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	553
AxyI	CCTNAGG	1 cut(s)	973
BaeGI	GKGCMC	2 cut(s)	295, 991
BanI	GGYRCC	2 cut(s)	429, 986
BanII	GRGCYC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	295, 982
BbvI	GCAGC	2 cut(s)	141, 144
BccI	CCATC	2 cut(s)	1250, 1330
BcoDI	GTCTC	2 cut(s)	956, 1267
BfaI	CTAG	6 cut(s)	120, 338, 401, 497, 1434, 1438
BfmI	CTRYAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	901
BisI	GCNGC	2 cut(s)	155, 158
BlpI	GCTNAGC	2 cut(s)	273, 278
BlsI	GCNGC	2 cut(s)	156, 159
BmcAI	AGTACT	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	317, 431, 988
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	3 cut(s)	56, 199, 1247
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	589, 1217
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu1102I	GCTNAGC	2 cut(s)	273, 278
BpuEI	CTTGAG	2 cut(s)	550, 977
Bsa29I	ATCGAT	1 cut(s)	802
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	1043
BsaXI	ACNNNNNCTCC	4 cut(s)	762, 792, 1112, 1142
Bse1I	ACTGG	3 cut(s)	247, 892, 1200
Bse21I	CCTNAGG	1 cut(s)	973
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	798
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	1 cut(s)	1043
BseGI	GGATG	1 cut(s)	1262
BseJI	GATNNNNATC	1 cut(s)	798
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	6 cut(s)	232, 264, 745, 987, 1075, 1259
BseNI	ACTGG	3 cut(s)	247, 892, 1200
BseRI	GAGGAG	6 cut(s)	74, 136, 770, 1133, 1136, 1285
BseSI	GKGCMC	2 cut(s)	295, 991
BseXI	GCAGC	2 cut(s)	141, 144
BseYI	CCCAGC	1 cut(s)	26
BshNI	GGYRCC	2 cut(s)	429, 986
BshVI	ATCGAT	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	295, 982
BsiSI	CCGG	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	956, 1267
Bsp1286I	GDGCHC	3 cut(s)	295, 982, 991
Bsp143I	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
Bsp1720I	GCTNAGC	2 cut(s)	273, 278
BspACI	CCGC	1 cut(s)	652
BspCNI	CTCAG	6 cut(s)	231, 265, 744, 986, 1074, 1260
BspDI	ATCGAT	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	317, 431, 988
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	2 cut(s)	375, 657
BspQI	GCTCTTC	1 cut(s)	1160
BspT107I	GGYRCC	2 cut(s)	429, 986
BspTI	CTTAAG	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	247, 892, 1200
BssECI	CCNNGG	1 cut(s)	1043
BssMI	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
BssNAI	GTATAC	1 cut(s)	257
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	1043
Bst1107I	GTATAC	1 cut(s)	257
Bst4CI	ACNGT	4 cut(s)	461, 477, 543, 704
Bst6I	CTCTTC	1 cut(s)	1160
BstACI	GRCGYC	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	901
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	291, 422
BstDEI	CTNAG	9 cut(s)	218, 273, 278, 320, 425, 731, 973, 1061, 1268
BstF5I	GGATG	1 cut(s)	1262
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	7 cut(s)	232, 370, 632, 665, 760, 802, 865
BstMAI	GTCTC	2 cut(s)	956, 1267
BstMBI	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 295, 681, 986, 1429
BstNSI	RCATGY	2 cut(s)	77, 211
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	2 cut(s)	295, 991
BstSNI	TACGTA	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	141, 144
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	367, 662
BstYI	RGATCY	2 cut(s)	367, 662
BstZ17I	GTATAC	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	802
Bsu36I	CCTNAGG	1 cut(s)	973
BsuTUI	ATCGAT	1 cut(s)	802
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	1262
BtsI	GCAGTG	3 cut(s)	293, 784, 856
BtsIMutI	CAGTG	6 cut(s)	240, 293, 739, 784, 856, 1383
Cac8I	GCNNGC	2 cut(s)	291, 422
CfoI	GCGC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	802
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	1349, 1384
CviAII	CATG	3 cut(s)	74, 208, 967
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	9 cut(s)	218, 273, 278, 320, 425, 731, 973, 1061, 1268
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	7 cut(s)	231, 369, 631, 664, 759, 801, 864
DpnII	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
Eam1104I	CTCTTC	1 cut(s)	1160
EarI	CTCTTC	1 cut(s)	1160
Ecl136II	GAGCTC	1 cut(s)	980
Eco105I	TACGTA	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	1043
Eco24I	GRGCYC	1 cut(s)	982
Eco32I	GATATC	2 cut(s)	184, 1307
Eco53kI	GAGCTC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1164
Eco81I	CCTNAGG	1 cut(s)	973
EcoICRI	GAGCTC	1 cut(s)	980
EcoRI	GAATTC	2 cut(s)	246, 593
EcoRV	GATATC	2 cut(s)	184, 1307
EcoT14I	CCWWGG	1 cut(s)	1043
EcoT38I	GRGCYC	1 cut(s)	982
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	1043
FaeI	CATG	3 cut(s)	77, 211, 970
FalI	AAGNNNNNCTT	2 cut(s)	1137, 1169
FatI	CATG	3 cut(s)	73, 207, 966
FauNDI	CATATG	2 cut(s)	671, 679
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	155, 158
FokI	GGATG	1 cut(s)	1269
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	2 cut(s)	155, 158
FspBI	CTAG	6 cut(s)	120, 338, 401, 497, 1434, 1438
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	2 cut(s)	155, 158
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	589, 1217
HaeII	RGCGCY	1 cut(s)	433
HapII	CCGG	1 cut(s)	666
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	77, 211, 970
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	8 cut(s)	4, 12, 263, 643, 777, 824, 949, 1373
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	4 cut(s)	257, 293, 480, 539
Hpy188I	TCNGA	4 cut(s)	221, 468, 823, 1064
Hpy188III	TCNNGA	7 cut(s)	567, 584, 606, 627, 975, 994, 1158
Hpy8I	GTNNAC	4 cut(s)	257, 293, 480, 539
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	5 cut(s)	125, 342, 1295, 1417, 1421
HpyCH4III	ACNGT	4 cut(s)	461, 477, 543, 704
HpyCH4IV	ACGT	2 cut(s)	620, 917
HpyCH4V	TGCA	6 cut(s)	160, 293, 1003, 1227, 1239, 1260
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 295, 681, 986, 1429
HpyF3I	CTNAG	9 cut(s)	218, 273, 278, 320, 425, 731, 973, 1061, 1268
HpySE526I	ACGT	2 cut(s)	620, 917
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	77, 211, 970
HspAI	GCGC	1 cut(s)	430
KasI	GGCGCC	1 cut(s)	429
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
LguI	GCTCTTC	1 cut(s)	1160
LmnI	GCTCC	4 cut(s)	513, 756, 977, 1123
Lsp1109I	GCAGC	2 cut(s)	141, 144
LweI	GCATC	3 cut(s)	56, 199, 1247
MaeI	CTAG	6 cut(s)	120, 338, 401, 497, 1434, 1438
MaeII	ACGT	2 cut(s)	620, 917
MaeIII	GTNAC	3 cut(s)	340, 414, 1016
MalI	GATC	7 cut(s)	231, 369, 631, 664, 759, 801, 864
MboI	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
MboII	GAAGA	7 cut(s)	190, 320, 512, 638, 1085, 1177, 1226
MflI	RGATCY	2 cut(s)	367, 662
MhlI	GDGCHC	3 cut(s)	295, 982, 991
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	4 cut(s)	13, 257, 771, 958
MmeI	TCCRAC	2 cut(s)	13, 293
MseI	TTAA	6 cut(s)	479, 902, 945, 1172, 1187, 1350
MslI	CAYNNNNRTG	1 cut(s)	789
MspCI	CTTAAG	1 cut(s)	901
MspI	CCGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	5 cut(s)	120, 295, 681, 986, 1429
NarI	GGCGCC	1 cut(s)	430
NdeI	CATATG	2 cut(s)	671, 679
NdeII	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
NlaIII	CATG	3 cut(s)	77, 211, 970
NlaIV	GGNNCC	3 cut(s)	317, 431, 988
NmeAIII	GCCGAG	1 cut(s)	1381
NspI	RCATGY	2 cut(s)	77, 211
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	1160
PfeI	GAWTC	4 cut(s)	12, 643, 824, 1373
PkrI	GCNGC	2 cut(s)	156, 159
PleI	GAGTC	4 cut(s)	12, 257, 771, 957
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	4 cut(s)	12, 257, 771, 957
Ppu21I	YACGTR	1 cut(s)	621
PscI	ACATGT	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	982
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	317, 431, 988
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	367, 662
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	982
SapI	GCTCTTC	1 cut(s)	1160
SaqAI	TTAA	6 cut(s)	479, 902, 945, 1172, 1187, 1350
SatI	GCNGC	2 cut(s)	155, 158
Sau3AI	GATC	7 cut(s)	229, 367, 629, 662, 757, 799, 862
ScaI	AGTACT	1 cut(s)	225
SchI	GAGTC	4 cut(s)	13, 257, 771, 958
SduI	GDGCHC	3 cut(s)	295, 982, 991
SfaNI	GCATC	3 cut(s)	56, 199, 1247
SfcI	CTRYAG	1 cut(s)	158
SfoI	GGCGCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	3 cut(s)	565, 901, 992
SmoI	CTYRAG	3 cut(s)	565, 901, 992
SnaBI	TACGTA	1 cut(s)	621
SsiI	CCGC	1 cut(s)	652
SspDI	GGCGCC	1 cut(s)	429
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	6 cut(s)	120, 338, 401, 497, 1434, 1438
SstI	GAGCTC	1 cut(s)	982
StyI	CCWWGG	1 cut(s)	1043
TaaI	ACNGT	4 cut(s)	461, 477, 543, 704
TaiI	ACGT	2 cut(s)	623, 920
TaqI	TCGA	5 cut(s)	10, 348, 591, 802, 1071
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	4 cut(s)	12, 643, 824, 1373
Tru1I	TTAA	6 cut(s)	479, 902, 945, 1172, 1187, 1350
Tru9I	TTAA	6 cut(s)	479, 902, 945, 1172, 1187, 1350
TscAI	CASTG	6 cut(s)	247, 300, 739, 791, 863, 1383
TseI	GCWGC	2 cut(s)	154, 157
TspDTI	ATGAA	7 cut(s)	4, 117, 363, 567, 783, 845, 1314
TspRI	CASTG	6 cut(s)	247, 300, 739, 791, 863, 1383
Vha464I	CTTAAG	1 cut(s)	901
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	4 cut(s)	246, 530, 593, 721
XceI	RCATGY	2 cut(s)	77, 211
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	6 cut(s)	120, 338, 401, 497, 1434, 1438
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.