Rmu_sc0001714.1_g000010

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001714.1
OG0007612
Physical Location & Seq
Reverse (-)
36591 .. 43943
7353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1401 bp
atggcgcttgagtcttcaattctaagcccgcccagattcatttctggttcgaaatcattgagtttcttgtattaccataagcagaaaaatttccccaccaaggttttggtgcaaagtaatcaatacccatttcgattggtgtcgaattgcattggcactagcgattttgggtggttcttaggtccaagatgcgaaggagttgacttgtttgctaatagagctcgtttgagagctgtaggtaaagatagtgagagttctagtgtacaaatactatttcgggttcgagttttgattttgttagggtctaggagagcttttgctgtggagggtgtggtcaatgcaagctatggggttgttgacaaatgcatattgatgttcagaaatgcttggccgaagacgctatggccttggaaggtgcgtgagttggctgagaaagagcctgaaaatggtgtcttcagattgcttcgcaatgatgtgactcagttcttgtcaaccatacttattggcacaacagcaactgctttagttacagaggctgcaacagcgatatttggtgaagctggtgtttgtgcagcaactggagtaatggctgttcttattttgctcctcactgaaataactcccaaaagtgtttctgttcacaatcccacagaagttgctaggtttgtggttaggccggtggcttggctttcattggtactatatcctgtcggaagagttggggacgggttaagtggggcaatagaggaggaagaacaggatatgattgaaaatgtgttggagattaaagatacgcatgttagagaggtgatgacacctcttgtagatgtagttgcaattgatgccagtgcaacgctaattgattttcacgacttggtgcctgtttttgagcagcgtgttgataacatggtaggcattgcatgcaatggatctcctggattatgttcagaagatattcatgggaggcttgacaaagaacaaggggttatctgctttgattatcggcattgcaaatctgatataaagagcataaaggtgaggctaggggcgattaagaagaagaggaacgctgtgctgaagtatctgaagaataatgttgctgttcttctcaagattggccttgatattaatttcctggatccgagagttagggcaccaatggtgatcaaatttgactgtagtaggaggtatgaaggtagcgaaccaggtaggaatcagttttctcttctgggggccggttttgtacttttcccgcctgttatggtgactccgctgccggttatgggctcctgggattgggggcttcaaggtgtgcggcgatggttgctcggatttgagggctacgaaattagggtttcagggttagagcttcgtgctgataacatgtttaaggaaaactga

Protein Analysis

466

Amino Acids

51.84

Weight (kDa)

8.63

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 134 - 249 8.9e-20 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 877, 1153
AciI CCGC 4 cut(s) 29, 1253, 1271, 1315
AclWI GGATC 3 cut(s) 937, 1133, 1146
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 2 cut(s) 88, 1169
AcuI CTGAAG 3 cut(s) 439, 1097, 1106
AfaI GTAC 3 cut(s) 264, 699, 1245
AfiI CCNNNNNNNGG 4 cut(s) 100, 446, 1283, 1296
AflIII ACRYGT 1 cut(s) 1383
AgsI TTSAA 3 cut(s) 18, 770, 1307
AjnI CCWGG 4 cut(s) 934, 1134, 1204, 1289
AluBI AGCT 6 cut(s) 221, 233, 314, 345, 560, 1369
AluI AGCT 6 cut(s) 221, 233, 314, 345, 560, 1369
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 3 cut(s) 937, 1133, 1146
AlwNI CAGNNNCTG 3 cut(s) 518, 536, 578
AoxI GGCC 5 cut(s) 389, 404, 674, 1117, 1233
ApeKI GCWGC 4 cut(s) 536, 572, 892, 1273
ApoI RAATTY 2 cut(s) 88, 1169
AseI ATTAAT 1 cut(s) 1128
Asp700I GAANNNNTTC 2 cut(s) 89, 954
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 182, 1233
AsuHPI GGTGA 5 cut(s) 566, 820, 1048, 1174, 1276
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 1156
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BamHI GGATCC 1 cut(s) 1138
BanI GGYRCC 2 cut(s) 877, 1153
BanII GRGCYC 2 cut(s) 223, 1289
BbsI GAAGAC 3 cut(s) 6, 401, 445
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 4 cut(s) 523, 584, 904, 1260
BccI CCATC 1 cut(s) 1314
BciT130I CCWGG 4 cut(s) 936, 1136, 1206, 1291
BclI TGATCA 1 cut(s) 1164
BfaI CTAG 5 cut(s) 159, 258, 306, 660, 1043
BfmI CTRYAG 2 cut(s) 234, 1177
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 5 cut(s) 537, 573, 893, 1274, 1316
BlsI GCNGC 5 cut(s) 538, 574, 894, 1275, 1317
Bme1390I CCNGG 4 cut(s) 936, 1136, 1206, 1291
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 182, 1233
BmiI GGNNCC 5 cut(s) 879, 1140, 1155, 1234, 1288
BmrFI CCNGG 4 cut(s) 936, 1136, 1206, 1291
BmsI GCATC 2 cut(s) 179, 832
BpiI GAAGAC 3 cut(s) 6, 401, 445
BpmI CTGGAG 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 29, 1094
BsaJI CCNNGG 3 cut(s) 99, 407, 1290
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 446, 1283, 1296
Bse118I RCCGGY 3 cut(s) 676, 1235, 1276
Bse1I ACTGG 2 cut(s) 583, 846
Bse3DI GCAATG 4 cut(s) 475, 915, 931, 1006
BseBI CCWGG 4 cut(s) 936, 1136, 1206, 1291
BseDI CCNNGG 3 cut(s) 99, 407, 1290
BseLI CCNNNNNNNGG 4 cut(s) 100, 446, 1283, 1296
BseMI GCAATG 4 cut(s) 475, 915, 931, 1006
BseMII CTCAG 2 cut(s) 420, 494
BseNI ACTGG 2 cut(s) 583, 846
BseRI GAGGAG 2 cut(s) 596, 761
BseSI GKGCMC 1 cut(s) 1156
BseXI GCAGC 4 cut(s) 523, 584, 904, 1260
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 5 cut(s) 391, 406, 676, 1119, 1235
BshNI GGYRCC 2 cut(s) 877, 1153
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 3 cut(s) 677, 1236, 1277
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 4 cut(s) 100, 446, 1283, 1296
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 5 cut(s) 391, 406, 676, 1119, 1235
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 223, 1156, 1289
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 929, 1138, 1164
BspACI CCGC 4 cut(s) 29, 1253, 1271, 1315
BspANI GGCC 5 cut(s) 391, 406, 676, 1119, 1235
BspCNI CTCAG 2 cut(s) 421, 493
BspLI GGNNCC 5 cut(s) 879, 1140, 1155, 1234, 1288
BspPI GGATC 3 cut(s) 937, 1133, 1146
BspT104I TTCGAA 1 cut(s) 50
BspT107I GGYRCC 2 cut(s) 877, 1153
BsrDI GCAATG 4 cut(s) 475, 915, 931, 1006
BsrFI RCCGGY 3 cut(s) 676, 1235, 1276
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 2 cut(s) 583, 846
BssAI RCCGGY 3 cut(s) 676, 1235, 1276
BssECI CCNNGG 3 cut(s) 99, 407, 1290
BssMI GATC 3 cut(s) 929, 1138, 1164
BssT1I CCWWGG 2 cut(s) 99, 407
Bst2UI CCWGG 4 cut(s) 936, 1136, 1206, 1291
Bst4CI ACNGT 1 cut(s) 1178
Bst6I CTCTTC 3 cut(s) 709, 1055, 1230
BstAPI GCANNNNNTGC 2 cut(s) 842, 921
BstAUI TGTACA 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 29, 343, 922
BstDEI CTNAG 4 cut(s) 23, 178, 429, 480
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 932, 1141, 1167
BstMBI GATC 3 cut(s) 929, 1138, 1164
BstMWI GCNNNNNNNGC 6 cut(s) 218, 397, 542, 842, 921, 1324
BstNI CCWGG 4 cut(s) 936, 1136, 1206, 1291
BstNSI RCATGY 3 cut(s) 800, 924, 1387
BstSCI CCNGG 4 cut(s) 934, 1134, 1204, 1289
BstSFI CTRYAG 2 cut(s) 234, 1177
BstSLI GKGCMC 1 cut(s) 1156
BstV1I GCAGC 4 cut(s) 523, 584, 904, 1260
BstV2I GAAGAC 3 cut(s) 6, 401, 445
BstX2I RGATCY 2 cut(s) 929, 1138
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 2 cut(s) 929, 1138
BsuRI GGCC 5 cut(s) 391, 406, 676, 1119, 1235
BtgZI GCGATG 1 cut(s) 1333
BtsIMutI CAGTG 2 cut(s) 609, 853
Cac8I GCNNGC 3 cut(s) 29, 343, 922
CaiI CAGNNNCTG 3 cut(s) 518, 536, 578
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 3 cut(s) 676, 1235, 1276
Cfr13I GGNCC 2 cut(s) 182, 1233
CseI GACGC 1 cut(s) 406
CsiI ACCWGGT 1 cut(s) 1204
Csp6I GTAC 3 cut(s) 263, 698, 1244
CspCI CAANNNNNGTGG 2 cut(s) 637, 672
CviAII CATG 5 cut(s) 797, 907, 921, 959, 1384
CviQI GTAC 3 cut(s) 263, 698, 1244
DdeI CTNAG 4 cut(s) 23, 178, 429, 480
DpnI GATC 3 cut(s) 931, 1140, 1166
DpnII GATC 3 cut(s) 929, 1138, 1164
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 3 cut(s) 709, 1055, 1230
EarI CTCTTC 3 cut(s) 709, 1055, 1230
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 99, 407
Eco24I GRGCYC 2 cut(s) 223, 1289
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 3 cut(s) 439, 1097, 1106
EcoICRI GAGCTC 1 cut(s) 221
EcoRII CCWGG 4 cut(s) 934, 1134, 1204, 1289
EcoT14I CCWWGG 2 cut(s) 99, 407
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 223, 1289
ErhI CCWWGG 2 cut(s) 99, 407
FaeI CATG 5 cut(s) 800, 910, 924, 962, 1387
FaqI GGGAC 1 cut(s) 737
FatI CATG 5 cut(s) 796, 906, 920, 958, 1383
FauI CCCGC 2 cut(s) 36, 1260
FbaI TGATCA 1 cut(s) 1164
Fnu4HI GCNGC 5 cut(s) 537, 573, 893, 1274, 1316
FriOI GRGCYC 2 cut(s) 223, 1289
Fsp4HI GCNGC 5 cut(s) 537, 573, 893, 1274, 1316
FspBI CTAG 5 cut(s) 159, 258, 306, 660, 1043
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 537, 573, 893, 1274, 1316
GsuI CTGGAG 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 391, 406, 676, 1119, 1235
HapII CCGG 3 cut(s) 677, 1236, 1277
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 800, 910, 924, 962, 1387
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 202, 358, 492
HindII GTYRAC 3 cut(s) 202, 358, 492
HinfI GANTC 5 cut(s) 11, 36, 478, 1213, 1267
HpaII CCGG 3 cut(s) 677, 1236, 1277
HphI GGTGA 5 cut(s) 566, 820, 1048, 1174, 1276
Hpy166II GTNNAC 5 cut(s) 202, 263, 358, 492, 640
Hpy188I TCNGA 8 cut(s) 380, 458, 713, 949, 1018, 1086, 1143, 1331
Hpy188III TCNNGA 2 cut(s) 869, 1111
Hpy8I GTNNAC 5 cut(s) 202, 263, 358, 492, 640
HpyAV CCTTC 3 cut(s) 188, 406, 1187
HpyCH4III ACNGT 1 cut(s) 1178
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 397, 542, 842, 921, 1324
HpyF3I CTNAG 4 cut(s) 23, 178, 429, 480
Hsp92II CATG 5 cut(s) 800, 910, 924, 962, 1387
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 1164
Kzo9I GATC 3 cut(s) 929, 1138, 1164
LmnI GCTCC 2 cut(s) 609, 1292
Lsp1109I GCAGC 4 cut(s) 523, 584, 904, 1260
LweI GCATC 2 cut(s) 179, 832
MabI ACCWGGT 1 cut(s) 1204
MaeI CTAG 5 cut(s) 159, 258, 306, 660, 1043
MaeIII GTNAC 3 cut(s) 475, 526, 1264
MalI GATC 3 cut(s) 931, 1140, 1166
MboI GATC 3 cut(s) 929, 1138, 1164
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 2 cut(s) 929, 1138
MhlI GDGCHC 3 cut(s) 223, 1156, 1289
MluCI AATT 8 cut(s) 18, 88, 145, 837, 858, 1129, 1169, 1347
MlyI GAGTC 3 cut(s) 20, 472, 1261
MmeI TCCRAC 2 cut(s) 691, 759
Mph1103I ATGCAT 1 cut(s) 368
MroXI GAANNNNTTC 2 cut(s) 89, 954
MseI TTAA 5 cut(s) 731, 786, 1053, 1128, 1389
MslI CAYNNNNRTG 2 cut(s) 371, 1034
MspA1I CMGCKG 1 cut(s) 1273
MspI CCGG 3 cut(s) 677, 1236, 1277
MspR9I CCNGG 4 cut(s) 936, 1136, 1206, 1291
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 4 cut(s) 936, 1136, 1206, 1291
MwoI GCNNNNNNNGC 6 cut(s) 218, 397, 542, 842, 921, 1324
NdeII GATC 3 cut(s) 929, 1138, 1164
NlaIII CATG 5 cut(s) 800, 910, 924, 962, 1387
NlaIV GGNNCC 5 cut(s) 879, 1140, 1155, 1234, 1288
NmuCI GTSAC 2 cut(s) 475, 1264
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 3 cut(s) 800, 924, 1387
NspV TTCGAA 1 cut(s) 50
PaeI GCATGC 1 cut(s) 924
PciI ACATGT 1 cut(s) 1383
PdmI GAANNNNTTC 2 cut(s) 89, 954
PfeI GAWTC 2 cut(s) 36, 1213
PfoI TCCNGGA 2 cut(s) 934, 1134
PkrI GCNGC 5 cut(s) 538, 574, 894, 1275, 1317
PleI GAGTC 3 cut(s) 19, 472, 1261
PpsI GAGTC 3 cut(s) 19, 472, 1261
PscI ACATGT 1 cut(s) 1383
PshBI ATTAAT 1 cut(s) 1128
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 4 cut(s) 934, 1134, 1204, 1289
PspGI CCWGG 4 cut(s) 934, 1134, 1204, 1289
PspN4I GGNNCC 5 cut(s) 879, 1140, 1155, 1234, 1288
PspPI GGNCC 2 cut(s) 182, 1233
PsrI GAACNNNNNNTAC 2 cut(s) 576, 608
PstNI CAGNNNCTG 3 cut(s) 518, 536, 578
PsuI RGATCY 2 cut(s) 929, 1138
RsaI GTAC 3 cut(s) 264, 699, 1245
RsaNI GTAC 3 cut(s) 263, 698, 1244
RseI CAYNNNNRTG 2 cut(s) 371, 1034
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 5 cut(s) 731, 786, 1053, 1128, 1389
SatI GCNGC 5 cut(s) 537, 573, 893, 1274, 1316
Sau3AI GATC 3 cut(s) 929, 1138, 1164
Sau96I GGNCC 2 cut(s) 182, 1233
SchI GAGTC 3 cut(s) 20, 472, 1261
ScrFI CCNGG 4 cut(s) 936, 1136, 1206, 1291
SduI GDGCHC 3 cut(s) 223, 1156, 1289
SexAI ACCWGGT 1 cut(s) 1204
SfaNI GCATC 2 cut(s) 179, 832
SfcI CTRYAG 2 cut(s) 234, 1177
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 371, 1034
SmlI CTYRAG 2 cut(s) 8, 1109
SmoI CTYRAG 2 cut(s) 8, 1109
SphI GCATGC 1 cut(s) 924
Sse9I AATT 8 cut(s) 18, 88, 145, 837, 858, 1129, 1169, 1347
SsiI CCGC 4 cut(s) 29, 1253, 1271, 1315
SspMI CTAG 5 cut(s) 159, 258, 306, 660, 1043
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 4 cut(s) 934, 1134, 1204, 1289
StyI CCWWGG 2 cut(s) 99, 407
TaaI ACNGT 1 cut(s) 1178
TaqI TCGA 4 cut(s) 50, 133, 143, 283
TasI AATT 8 cut(s) 18, 88, 145, 837, 858, 1129, 1169, 1347
TatI WGTACW 2 cut(s) 262, 1243
TauI GCSGC 1 cut(s) 1318
TfiI GAWTC 2 cut(s) 36, 1213
Tru1I TTAA 5 cut(s) 731, 786, 1053, 1128, 1389
Tru9I TTAA 5 cut(s) 731, 786, 1053, 1128, 1389
TscAI CASTG 2 cut(s) 616, 853
TseFI GTSAC 2 cut(s) 475, 1264
TseI GCWGC 4 cut(s) 536, 572, 892, 1273
Tsp45I GTSAC 2 cut(s) 475, 1264
TspDTI ATGAA 4 cut(s) 28, 681, 947, 1206
TspRI CASTG 2 cut(s) 616, 853
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 1128
XapI RAATTY 2 cut(s) 88, 1169
XceI RCATGY 3 cut(s) 800, 924, 1387
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 89, 954
XspI CTAG 5 cut(s) 159, 258, 306, 660, 1043
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.