Rmu_sc0001755.1_g000006

Glycerol-3-phosphate dehydrogenase NAD( )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001755.1
OG0010329
Physical Location & Seq
Reverse (-)
17710 .. 19923
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
ctggcctgggagaagcttgtccggtggtcccggtcgttgcgctccaagaacaagacagatgttcttgaacgcactaacaaggtggtggtgctcggaggtgggtcttttgcgacggcgatggcggcccacgttgcagatagaaaggatcagatggaagttaacatgctggtgcgtgatgctcaagtttgtcagtctattaatgagaaccattataatggtaagtacttcccagaacataagctaccggagaatgtgattgcaaccactgatgccaaagctgctttgcttaatgctgactattgcctccatgcagtccctgtgcagttcagcgcatcgtttcttgagggaattgcggaatatgtatatccagagttgccgttcatatctgttagcaagggtttggagctcaatacattgaggacaatgtctcagatcatcccccaagaattgaagaatcctcgccagcctttcattgcgctatcagggccttcttttgctctggagctgatgaacaaattaccaacagcgatggtggtagcgtcaaaagacaaaaaattggctaatgcagttcagcagttactagcttctagctatctaagaatcagcacttcaagtgatgtcacaggggtagaagttacaggtgctctcaagaatgtgcttgcaatagccgcaggtattgtggatgggatgaatcttggtaataattctaaggccgctcttgtttcacagggatgctcagagataagatggctggcaactaagatgggtgcgaagccgacaacaatcactggtctatctggaattggagatattatgcttacatgttttgtaaacctttctagaaacagaacagttggggttcgtcttggatcaggggagaaacttgatgacatacttggttccatgaatcaggtggcagaaggtgtatcgacagcaggagcagtgattgcgctagcgcagaaatataacgtcaagatgccagttttgactgcagtagctcggattattgacaatgaactgacccccaagaaagctgttttcgagctgatgagcctccctcaggttgaagaagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01110 ko04011 map00564 map01110 map04011
Pfam Domains
Protein Families
NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

358

Amino Acids

38.63

Weight (kDa)

8.75

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 27 - 186 1e-40 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 206 - 346 5.9e-52 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
GPD_NAD_C_bact PF20618 266 - 332 5.3e-22 Bacterial GPD, NAD-dependent C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 716
AciI CCGC 4 cut(s) 122, 353, 669, 714
AclWI GGATC 2 cut(s) 153, 877
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 1060
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 4 cut(s) 68, 451, 612, 1067
AjnI CCWGG 1 cut(s) 5
Alw21I GWGCWC 3 cut(s) 93, 408, 646
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 2 cut(s) 153, 877
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 4 cut(s) 3, 123, 485, 711
ApeKI GCWGC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 5 cut(s) 42, 332, 478, 952, 958
AspS9I GGNCC 3 cut(s) 27, 124, 485
AsuC2I CCSGG 1 cut(s) 31
AsuNHI GCTAGC 1 cut(s) 952
AvaII GGWCC 1 cut(s) 27
AxyI CCTNAGG 1 cut(s) 1059
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 3 cut(s) 93, 408, 646
BbvI GCAGC 1 cut(s) 265
BccI CCATC 6 cut(s) 112, 145, 523, 677, 741, 757
BceAI ACGGC 2 cut(s) 129, 361
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 4 cut(s) 581, 588, 840, 953
BfmI CTRYAG 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 662
BisI GCNGC 4 cut(s) 123, 279, 669, 714
BlsI GCNGC 4 cut(s) 124, 280, 670, 715
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 7, 31
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 27, 124, 485
BmiI GGNNCC 2 cut(s) 29, 901
BmrFI CCNGG 2 cut(s) 7, 31
BmsI GCATC 5 cut(s) 166, 259, 341, 722, 966
BmtI GCTAGC 1 cut(s) 956
BplI GAGNNNNNCTC 2 cut(s) 1042, 1074
BpmI CTGGAG 1 cut(s) 521
BpuEI CTTGAG 3 cut(s) 165, 362, 632
BpuMI CCSGG 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 2 cut(s) 21, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 1060
Bse1I ACTGG 2 cut(s) 793, 980
Bse21I CCTNAGG 1 cut(s) 1059
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 4 cut(s) 435, 688, 693, 737
BseLI CCNNNNNNNGG 1 cut(s) 1060
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 443, 750, 1073
BseNI ACTGG 2 cut(s) 793, 980
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 4 cut(s) 5, 125, 487, 713
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 93, 408, 646
BsiSI CCGG 3 cut(s) 22, 31, 245
BslFI GGGAC 2 cut(s) 13, 299
BslI CCNNNNNNNGG 1 cut(s) 1060
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 2 cut(s) 13, 299
BsnI GGCC 4 cut(s) 5, 125, 487, 713
Bsp1286I GDGCHC 3 cut(s) 93, 408, 646
Bsp143I GATC 3 cut(s) 145, 432, 869
BspACI CCGC 4 cut(s) 122, 353, 669, 714
BspANI GGCC 4 cut(s) 5, 125, 487, 713
BspCNI CTCAG 3 cut(s) 442, 749, 1072
BspLI GGNNCC 2 cut(s) 29, 901
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 662
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 153, 877
BsrBI CCGCTC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 793, 980
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 145, 432, 869
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 853
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 464, 660, 753, 954
BstDEI CTNAG 6 cut(s) 429, 596, 708, 736, 759, 1059
BstENI CCTNNNNNAGG 1 cut(s) 1058
BstF5I GGATG 4 cut(s) 435, 688, 693, 737
BstHHI GCGC 5 cut(s) 42, 332, 478, 952, 958
BstKTI GATC 3 cut(s) 148, 435, 872
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 3 cut(s) 145, 432, 869
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 6 cut(s) 122, 131, 278, 484, 668, 947
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 2 cut(s) 166, 825
BstSCI CCNGG 2 cut(s) 5, 29
BstSFI CTRYAG 1 cut(s) 990
BstV1I GCAGC 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 1059
BsuRI GGCC 4 cut(s) 5, 125, 487, 713
BtgZI GCGATG 2 cut(s) 131, 542
BtsCI GGATG 4 cut(s) 435, 688, 693, 737
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 3 cut(s) 264, 786, 948
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 4 cut(s) 464, 660, 753, 954
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 5 cut(s) 42, 332, 478, 952, 958
Cfr13I GGNCC 3 cut(s) 27, 124, 485
CseI GACGC 1 cut(s) 528
Csp6I GTAC 1 cut(s) 223
CviAII CATG 4 cut(s) 163, 308, 822, 904
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 6 cut(s) 429, 596, 708, 736, 759, 1059
DpnI GATC 3 cut(s) 147, 434, 871
DpnII GATC 3 cut(s) 145, 432, 869
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 406
Eco81I CCTNAGG 1 cut(s) 1059
EcoICRI GAGCTC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 1058
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 4 cut(s) 166, 311, 825, 907
FaqI GGGAC 2 cut(s) 13, 299
FatI CATG 4 cut(s) 162, 307, 821, 903
Fnu4HI GCNGC 4 cut(s) 123, 279, 669, 714
FokI GGATG 4 cut(s) 422, 695, 700, 744
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 4 cut(s) 123, 279, 669, 714
FspBI CTAG 4 cut(s) 581, 588, 840, 953
GlaI GCGC 5 cut(s) 41, 331, 477, 951, 957
GluI GCNGC 4 cut(s) 123, 279, 669, 714
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 4 cut(s) 5, 125, 487, 713
HapII CCGG 3 cut(s) 22, 31, 245
HgaI GACGC 1 cut(s) 528
HhaI GCGC 5 cut(s) 42, 332, 478, 952, 958
Hin1II CATG 4 cut(s) 166, 311, 825, 907
Hin6I GCGC 5 cut(s) 40, 330, 476, 950, 956
HinP1I GCGC 5 cut(s) 40, 330, 476, 950, 956
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 4 cut(s) 454, 600, 691, 907
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 3 cut(s) 22, 31, 245
Hpy166II GTNNAC 2 cut(s) 160, 832
Hpy188I TCNGA 6 cut(s) 95, 150, 432, 739, 1002, 1076
Hpy188III TCNNGA 8 cut(s) 65, 341, 368, 500, 649, 798, 840, 973
Hpy8I GTNNAC 2 cut(s) 160, 832
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 498, 914
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 2 cut(s) 129, 969
HpyCH4V TGCA 7 cut(s) 134, 260, 311, 322, 566, 662, 992
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 131, 278, 484, 668, 947
HpyF3I CTNAG 6 cut(s) 429, 596, 708, 736, 759, 1059
HpySE526I ACGT 2 cut(s) 129, 969
Hsp92II CATG 4 cut(s) 166, 311, 825, 907
HspAI GCGC 5 cut(s) 40, 330, 476, 950, 956
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 145, 432, 869
LmnI GCTCC 4 cut(s) 47, 403, 502, 938
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 5 cut(s) 166, 259, 341, 722, 966
MaeI CTAG 4 cut(s) 581, 588, 840, 953
MaeII ACGT 2 cut(s) 129, 969
MaeIII GTNAC 3 cut(s) 576, 619, 634
MalI GATC 3 cut(s) 147, 434, 871
MbiI CCGCTC 1 cut(s) 716
MboI GATC 3 cut(s) 145, 432, 869
MboII GAAGA 1 cut(s) 463
MhlI GDGCHC 3 cut(s) 93, 408, 646
MluCI AATT 6 cut(s) 348, 446, 515, 554, 703, 801
MnlI CCTC 7 cut(s) 89, 314, 337, 411, 468, 1064, 1068
MseI TTAA 3 cut(s) 159, 198, 288
MslI CAYNNNNRTG 3 cut(s) 167, 213, 730
MspI CCGG 3 cut(s) 22, 31, 245
MspR9I CCNGG 2 cut(s) 7, 31
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 122, 131, 278, 484, 668, 947
NciI CCSGG 1 cut(s) 31
NdeII GATC 3 cut(s) 145, 432, 869
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 4 cut(s) 166, 311, 825, 907
NlaIV GGNNCC 2 cut(s) 29, 901
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 2 cut(s) 166, 825
PciI ACATGT 1 cut(s) 821
PfeI GAWTC 4 cut(s) 454, 600, 691, 907
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 4 cut(s) 124, 280, 670, 715
PscI ACATGT 1 cut(s) 821
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 29, 901
PspPI GGNCC 3 cut(s) 27, 124, 485
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 3 cut(s) 167, 213, 730
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 159, 198, 288
SatI GCNGC 4 cut(s) 123, 279, 669, 714
Sau3AI GATC 3 cut(s) 145, 432, 869
Sau96I GGNCC 3 cut(s) 27, 124, 485
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 7, 31
SduI GDGCHC 3 cut(s) 93, 408, 646
SfaNI GCATC 5 cut(s) 166, 259, 341, 722, 966
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 3 cut(s) 167, 213, 730
SmlI CTYRAG 3 cut(s) 180, 341, 647
SmoI CTYRAG 3 cut(s) 180, 341, 647
Sse9I AATT 6 cut(s) 348, 446, 515, 554, 703, 801
SsiI CCGC 4 cut(s) 122, 353, 669, 714
SspMI CTAG 4 cut(s) 581, 588, 840, 953
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 5, 29
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 2 cut(s) 132, 972
TaqI TCGA 2 cut(s) 929, 1041
TasI AATT 6 cut(s) 348, 446, 515, 554, 703, 801
TatI WGTACW 1 cut(s) 222
TauI GCSGC 3 cut(s) 125, 671, 716
TfiI GAWTC 4 cut(s) 454, 600, 691, 907
Tru1I TTAA 3 cut(s) 159, 198, 288
Tru9I TTAA 3 cut(s) 159, 198, 288
TscAI CASTG 3 cut(s) 271, 793, 948
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 6 cut(s) 370, 460, 524, 704, 920, 1029
TspRI CASTG 3 cut(s) 271, 793, 948
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 27
VspI ATTAAT 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 1058
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 2 cut(s) 166, 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XspI CTAG 4 cut(s) 581, 588, 840, 953
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.