Rmu_sc0001759.1_g000043

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001759.1
OG0010234
Physical Location & Seq
Forward (+)
140326 .. 147307
6982 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2118 bp
ctgagaagctccaaatcaagcaccaattattccaatctctgtgatatatttctgagcaagtttgcggaaaaagggatctctttgagattaattaagatcagttccatcatgggtgatgaagacacggtggctaatggcaccgaaacagtagcaaacggtattagcaagccgcaggaaaccagtgaagctgtgagtgagaagaaatgtgaggagaaggtgggtatcaaagaaatggatgaagataagaaaagtgatgagaaagatggagttgagaaaatggatgaagatctagaggtcaatggaagcaaagatgaaaaagtgaaagaagaaaaagaggaacccaaagttgaggagattgaagacaaaactggggatcaagataagaaaggtgttgaaaaagctgaagttggaaaaatggatgaagacaaacaggcaaatggaagtaatggtgaaaaagtggaagaagaaactgatccaaatgaaaaagagatgaccaaaggaaactctgaagaaaagaaggaaattgaagtggaagaaaagaaaattgacgagactaatgaagcggaagagaaggcagaagagaaggaagaagagaagacagaagagatggaagaagagaaggatgaggagatggaagaagataaggaagaagagaagaaggacgaggagaagaaagaagagagacaaaaagaggctaagggggctaaaggatcgaaaaagcgtggacaacagagtggagagaaaactaaaagtaatgagaagaaaaaaaaagtgttaaaaaaggagccggagccaaggactcctgctattgatcgtcctgtacgtgagcggaaatcagttgaaaggctggtggcatctatagaaaaagatactaccagggacttccaaatagagaagggaagtggtacagcactgaaagacatacccaatgtggcctttaagttatcaaggaagaaaatggatgataccctcaaactacttcatacaattctttttgggggaaggagaggaaaggcagttcaggtcaagagtaacatatctaggttttctggttttgtgtggcatggaaatgaggacaagcaaaagagtaaagtaaaagaaaaaatggacaagtgtaataaagagaagttactggaattttgtgatctgtttgacttaccaaccgccaaagctacttctaagaaggaggatatagttgcgaagctgatagactttttggttgcacctcatgcgaccactactgtggtacttggagaaaaagagcagtctagtaagggccaaaagcgcaagagggcagctaaaggcagttcatcaacatctgggggctcaaagcggtcaggaaagagtcgtaggaagaatgatgatgattcaaaattggaggataagagtacaccagatacagaagacgagtcggaggaagaggagaaagaagaagacgatgaaaaggtagaggaggaaatggaagatgtagctcaagaaaagtctgaggatgagatgcctgagcattcagatagtgaagagaagcatgatcgttcagatgattctgaagaagaagtggaaaaaaagaagccacgttcaaaatcatcatccagaaagaaggaatctgctggaaaagctaaaactaaaaaagctatagtttctccaaaatctactcctaaatctactccacaagctaataaaccaaagaagtcaacaccaaaacgcactccagttgatgatgacagtgacacgagtccaaagccatcctcaaggaagaagagaactgagcgagtgtcaaaagcctcaactccaacaaaatctgccttgaaagaaaaaactgggaaaaaagttgctaaagggaaggacaagaccaaggaggaaaaattgaggccaagtgatgatgagttgagagatgcaatatgtgagattctcaaagaagttgacttcaatacggctactttcaccgacattctgaagcatcttgctcagcaatttgatactgatctcagcgtgagaaagtcatctataaaggtaatgatccaggaagagcttaccaaattagctgatgaggcggacgaggaagatggagatgatgcagagaaagatgaaccccagtctgctggggaggtggaagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

705

Amino Acids

79.45

Weight (kDa)

5.17

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 624 - 677 2.7e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 829
AciI CCGC 7 cut(s) 65, 170, 563, 829, 1164, 1333, 2051
AclWI GGATC 5 cut(s) 83, 381, 467, 718, 2011
AcsI RAATTY 1 cut(s) 1136
AcuI CTGAAG 4 cut(s) 423, 528, 1566, 1973
AfaI GTAC 4 cut(s) 822, 907, 1248, 1390
AgsI TTSAA 8 cut(s) 359, 395, 527, 842, 1371, 1578, 1807, 1927
AjnI CCWGG 2 cut(s) 875, 2019
AleI CACNNNNGTG 1 cut(s) 1241
AloI GAACNNNNNNTCC 2 cut(s) 1002, 1034
Alw26I GTCTC 2 cut(s) 545, 676
AlwI GGATC 5 cut(s) 83, 381, 467, 718, 2011
AoxI GGCC 3 cut(s) 933, 1276, 1868
ApeKI GCWGC 1 cut(s) 1295
ApoI RAATTY 1 cut(s) 1136
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 1287
AspS9I GGNCC 1 cut(s) 1276
AsuHPI GGTGA 3 cut(s) 125, 461, 1933
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 1328
BauI CACGAG 1 cut(s) 1729
BbsI GAAGAC 6 cut(s) 126, 366, 429, 602, 1410, 1440
BbvI GCAGC 1 cut(s) 1307
BccI CCATC 6 cut(s) 113, 257, 601, 625, 1750, 2057
BceAI ACGGC 1 cut(s) 1947
BciT130I CCWGG 2 cut(s) 877, 2021
BcoDI GTCTC 2 cut(s) 545, 676
BfaI CTAG 3 cut(s) 290, 1041, 1269
BfmI CTRYAG 2 cut(s) 858, 1632
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 170, 1296
BlpI GCTNAGC 1 cut(s) 1965
BlsI GCNGC 2 cut(s) 171, 1297
Bme1390I CCNGG 2 cut(s) 877, 2021
BmgT120I GGNCC 1 cut(s) 1276
BmiI GGNNCC 4 cut(s) 139, 339, 786, 792
BmrFI CCNGG 2 cut(s) 877, 2021
BmrI ACTGGG 3 cut(s) 378, 1827, 2086
BmsI GCATC 5 cut(s) 863, 1485, 1882, 1966, 2062
BmuI ACTGGG 3 cut(s) 378, 1827, 2086
BoxI GACNNNNGTC 1 cut(s) 1731
BpiI GAAGAC 6 cut(s) 126, 366, 429, 602, 1410, 1440
BpmI CTGGAG 1 cut(s) 1692
Bpu10I CCTNAGC 2 cut(s) 696, 1500
Bpu1102I GCTNAGC 1 cut(s) 1965
BpuEI CTTGAG 2 cut(s) 1458, 1732
BsaAI YACGTR 1 cut(s) 824
BsaBI GATNNNNATC 2 cut(s) 285, 1980
BsaJI CCNNGG 3 cut(s) 794, 876, 1851
Bse1I ACTGG 6 cut(s) 180, 373, 1137, 1709, 1822, 2092
Bse8I GATNNNNATC 2 cut(s) 285, 1980
BseBI CCWGG 2 cut(s) 877, 2021
BseDI CCNNGG 3 cut(s) 794, 876, 1851
BseGI GGATG 8 cut(s) 241, 286, 424, 628, 967, 1495, 1586, 1742
BseJI GATNNNNATC 2 cut(s) 285, 1980
BseMII CTCAG 6 cut(s) 44, 1476, 1491, 1755, 1979, 1999
BseNI ACTGG 6 cut(s) 180, 373, 1137, 1709, 1822, 2092
BseRI GAGGAG 6 cut(s) 224, 365, 641, 680, 1436, 1466
BseXI GCAGC 1 cut(s) 1307
BseYI CCCAGC 1 cut(s) 2099
BshFI GGCC 3 cut(s) 935, 1278, 1870
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 788
BslFI GGGAC 1 cut(s) 893
BsmAI GTCTC 2 cut(s) 545, 676
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 1504
BsnI GGCC 3 cut(s) 935, 1278, 1870
Bsp1286I GDGCHC 1 cut(s) 1328
Bsp1720I GCTNAGC 1 cut(s) 1965
BspACI CCGC 7 cut(s) 65, 170, 563, 829, 1164, 1333, 2051
BspANI GGCC 3 cut(s) 935, 1278, 1870
BspCNI CTCAG 6 cut(s) 45, 1477, 1492, 1756, 1978, 1998
BspLI GGNNCC 4 cut(s) 139, 339, 786, 792
BspPI GGATC 5 cut(s) 83, 381, 467, 718, 2011
BspQI GCTCTTC 1 cut(s) 2019
BspT107I GGYRCC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 829
BsrI ACTGG 6 cut(s) 180, 373, 1137, 1709, 1822, 2092
BssECI CCNNGG 3 cut(s) 794, 876, 1851
BssSI CACGAG 1 cut(s) 1729
BssT1I CCWWGG 2 cut(s) 794, 1851
Bst2BI CACGAG 1 cut(s) 1729
Bst2UI CCWGG 2 cut(s) 877, 2021
Bst4CI ACNGT 5 cut(s) 127, 148, 158, 1243, 1724
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstBAI YACGTR 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 9 cut(s) 2, 53, 696, 1179, 1485, 1500, 1764, 1965, 1985
BstF5I GGATG 8 cut(s) 241, 286, 424, 628, 967, 1495, 1586, 1742
BstHHI GCGC 1 cut(s) 1287
BstMAI GTCTC 2 cut(s) 545, 676
BstMWI GCNNNNNNNGC 5 cut(s) 701, 1229, 1284, 1613, 2048
BstNI CCWGG 2 cut(s) 877, 2021
BstPAI GACNNNNGTC 1 cut(s) 1731
BstSCI CCNGG 2 cut(s) 875, 2019
BstSFI CTRYAG 2 cut(s) 858, 1632
BstV1I GCAGC 1 cut(s) 1307
BstV2I GAAGAC 6 cut(s) 126, 366, 429, 602, 1410, 1440
BstX2I RGATCY 2 cut(s) 75, 286
BstXI CCANNNNNNTGG 2 cut(s) 1243, 2099
BstYI RGATCY 2 cut(s) 75, 286
BsuRI GGCC 3 cut(s) 935, 1278, 1870
BtsCI GGATG 8 cut(s) 241, 286, 424, 628, 967, 1495, 1586, 1742
BtsIMutI CAGTG 3 cut(s) 187, 911, 1729
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 1 cut(s) 1287
Cfr13I GGNCC 1 cut(s) 1276
Csp6I GTAC 4 cut(s) 821, 906, 1247, 1389
CviAII CATG 4 cut(s) 109, 1064, 1229, 1526
CviQI GTAC 4 cut(s) 821, 906, 1247, 1389
DdeI CTNAG 9 cut(s) 2, 53, 696, 1179, 1485, 1500, 1764, 1965, 1985
EciI GGCGGA 1 cut(s) 2066
Eco130I CCWWGG 2 cut(s) 794, 1851
Eco24I GRGCYC 1 cut(s) 1328
Eco57I CTGAAG 4 cut(s) 423, 528, 1566, 1973
EcoRII CCWGG 2 cut(s) 875, 2019
EcoT14I CCWWGG 2 cut(s) 794, 1851
EcoT38I GRGCYC 1 cut(s) 1328
ErhI CCWWGG 2 cut(s) 794, 1851
FaeI CATG 4 cut(s) 112, 1067, 1232, 1529
FaqI GGGAC 1 cut(s) 893
FatI CATG 4 cut(s) 108, 1063, 1228, 1525
Fnu4HI GCNGC 2 cut(s) 170, 1296
FokI GGATG 8 cut(s) 248, 293, 431, 635, 974, 1502, 1573, 1729
FriOI GRGCYC 1 cut(s) 1328
Fsp4HI GCNGC 2 cut(s) 170, 1296
FspBI CTAG 3 cut(s) 290, 1041, 1269
GlaI GCGC 1 cut(s) 1286
GluI GCNGC 2 cut(s) 170, 1296
GsaI CCCAGC 1 cut(s) 2103
GsuI CTGGAG 1 cut(s) 1692
HaeIII GGCC 3 cut(s) 935, 1278, 1870
HapII CCGG 1 cut(s) 788
HhaI GCGC 1 cut(s) 1287
Hin1II CATG 4 cut(s) 112, 1067, 1232, 1529
Hin6I GCGC 1 cut(s) 1285
HinP1I GCGC 1 cut(s) 1285
HincII GTYRAC 2 cut(s) 1692, 1921
HindII GTYRAC 2 cut(s) 1692, 1921
HinfI GANTC 8 cut(s) 799, 1345, 1367, 1409, 1541, 1601, 1732, 1906
HpaII CCGG 1 cut(s) 788
HphI GGTGA 3 cut(s) 125, 461, 1933
Hpy166II GTNNAC 4 cut(s) 725, 1391, 1692, 1921
Hpy188I TCNGA 8 cut(s) 54, 508, 1414, 1486, 1510, 1537, 1546, 1953
Hpy188III TCNNGA 6 cut(s) 290, 377, 1027, 1338, 1475, 1590
Hpy8I GTNNAC 4 cut(s) 725, 1391, 1692, 1921
HpyCH4III ACNGT 5 cut(s) 127, 148, 158, 1243, 1724
HpyCH4IV ACGT 2 cut(s) 823, 1573
HpyCH4V TGCA 3 cut(s) 1223, 1895, 2075
HpyF10VI GCNNNNNNNGC 5 cut(s) 701, 1229, 1284, 1613, 2048
HpyF3I CTNAG 9 cut(s) 2, 53, 696, 1179, 1485, 1500, 1764, 1965, 1985
HpySE526I ACGT 2 cut(s) 823, 1573
Hsp92II CATG 4 cut(s) 112, 1067, 1232, 1529
HspAI GCGC 1 cut(s) 1285
LguI GCTCTTC 1 cut(s) 2019
LmnI GCTCC 3 cut(s) 14, 784, 790
Lsp1109I GCAGC 1 cut(s) 1307
LweI GCATC 5 cut(s) 863, 1485, 1882, 1966, 2062
MaeI CTAG 3 cut(s) 290, 1041, 1269
MaeII ACGT 2 cut(s) 823, 1573
MaeIII GTNAC 3 cut(s) 1031, 1128, 1724
MbiI CCGCTC 1 cut(s) 829
MflI RGATCY 2 cut(s) 75, 286
MhlI GDGCHC 1 cut(s) 1328
MlyI GAGTC 4 cut(s) 793, 1354, 1418, 1741
MmeI TCCRAC 3 cut(s) 388, 1392, 1814
MseI TTAA 4 cut(s) 89, 93, 776, 939
MslI CAYNNNNRTG 2 cut(s) 1068, 1241
MspI CCGG 1 cut(s) 788
MspR9I CCNGG 2 cut(s) 877, 2021
Mva1269I GAATGC 1 cut(s) 1504
MvaI CCWGG 2 cut(s) 877, 2021
MwoI GCNNNNNNNGC 5 cut(s) 701, 1229, 1284, 1613, 2048
NlaIII CATG 4 cut(s) 112, 1067, 1232, 1529
NlaIV GGNNCC 4 cut(s) 139, 339, 786, 792
NmuCI GTSAC 1 cut(s) 1724
OliI CACNNNNGTG 1 cut(s) 1241
PacI TTAATTAA 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 2019
PcsI WCGNNNNNNNCGW 1 cut(s) 820
PctI GAATGC 1 cut(s) 1504
PfeI GAWTC 4 cut(s) 1367, 1541, 1601, 1906
PfoI TCCNGGA 1 cut(s) 2019
PkrI GCNGC 2 cut(s) 171, 1297
PleI GAGTC 4 cut(s) 793, 1353, 1417, 1740
PpsI GAGTC 4 cut(s) 793, 1353, 1417, 1740
Ppu21I YACGTR 1 cut(s) 824
PshAI GACNNNNGTC 1 cut(s) 1731
PshBI ATTAAT 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 875, 2019
PspFI CCCAGC 1 cut(s) 2099
PspGI CCWGG 2 cut(s) 875, 2019
PspN4I GGNNCC 4 cut(s) 139, 339, 786, 792
PspPI GGNCC 1 cut(s) 1276
PsuI RGATCY 2 cut(s) 75, 286
RsaI GTAC 4 cut(s) 822, 907, 1248, 1390
RsaNI GTAC 4 cut(s) 821, 906, 1247, 1389
RseI CAYNNNNRTG 2 cut(s) 1068, 1241
SapI GCTCTTC 1 cut(s) 2019
SaqAI TTAA 4 cut(s) 89, 93, 776, 939
SatI GCNGC 2 cut(s) 170, 1296
Sau96I GGNCC 1 cut(s) 1276
SchI GAGTC 4 cut(s) 793, 1354, 1418, 1741
ScrFI CCNGG 2 cut(s) 877, 2021
SduI GDGCHC 1 cut(s) 1328
SfaNI GCATC 5 cut(s) 863, 1485, 1882, 1966, 2062
SfcI CTRYAG 2 cut(s) 858, 1632
SmiMI CAYNNNNRTG 2 cut(s) 1068, 1241
SmlI CTYRAG 2 cut(s) 1473, 1747
SmoI CTYRAG 2 cut(s) 1473, 1747
SsiI CCGC 7 cut(s) 65, 170, 563, 829, 1164, 1333, 2051
SspMI CTAG 3 cut(s) 290, 1041, 1269
StyD4I CCNGG 2 cut(s) 875, 2019
StyI CCWWGG 2 cut(s) 794, 1851
TaaI ACNGT 5 cut(s) 127, 148, 158, 1243, 1724
TaiI ACGT 2 cut(s) 826, 1576
TaqI TCGA 1 cut(s) 713
TatI WGTACW 1 cut(s) 1388
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 4 cut(s) 1367, 1541, 1601, 1906
Tru1I TTAA 4 cut(s) 89, 93, 776, 939
Tru9I TTAA 4 cut(s) 89, 93, 776, 939
TscAI CASTG 3 cut(s) 187, 918, 1729
TseFI GTSAC 1 cut(s) 1724
TseI GCWGC 1 cut(s) 1295
Tsp45I GTSAC 1 cut(s) 1724
TspRI CASTG 3 cut(s) 187, 918, 1729
VspI ATTAAT 1 cut(s) 89
XapI RAATTY 1 cut(s) 1136
XbaI TCTAGA 1 cut(s) 289
XspI CTAG 3 cut(s) 290, 1041, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.