Rmu_sc0001982.1_g000016

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001982.1
OG0005054
Physical Location & Seq
Reverse (-)
48277 .. 55685
7409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1494 bp
atgcctatatacactgcaactctggcccttggatcagtctcacggctcttgttcatcaccagcgatgcctcctcctcctcctctaatacttgctcagtctcttcttgtttcttaaaccactccaacttcccaaagcaatcccacaagtctgtaagcaagaagagaacctctctagtttgcgctgccagcaagactgaagtgcaagactcctctccctctactgagcaggctcggaggtctgctgattggaaggtagcaaaagcttacagtgatagtggattcatctttgatgggatggttgaagggtataacagtggaggtttgctggttcggtttcattctttagtgggttttcttccatttccacaattgagcccatcacacttctgccaagaaccggggaaaggcgtccaggagattgcgaaaggattacttggttctcttatatctgttaaggtaatccaagcagatgaagagaacaagaaactgatattctcagaaaaggaagctgtctggtccaagttttctgagaaaattagtgttggggatgtttttgaagctagggttggttctgtggaggattacggtgcttttgttcacctactatttcctgatggtctttatcatttgactggactagtacatgtctcggaggtttcatgggatctagttcaggatgtaagagacattttgtcggagggcgatgcagtaaaagttaagatcattaatattgatcgagaaaagtcaagaatcacattatcaattaaacagttggaggaagatccacttttagaaacattggacaaagtgataccccaggatggctctgacggtcctgattctttgaaccctaacaatagcaataatatagaacctcttccaggccttgaagccatattcgaagagctactacaggaagatggaatagatgatgtaggaatcactcgccaaggatttgagaaaagggtggtttcacaggacctgcagctttggctttctaattcaccagccattaaccagaagtttactctccttgctcgggcaggaaggcaggtacaggaaatacaactgacgacaacacttgatcaggaaggtataaaacaagcactccagcgacccgccggagctgttgttaggtctgggccaagttgtgaatcaccgcacatatatgagatggagccgagtcttgacaaagcggcactcctccaaggacggctcaagtacaatgatgctcggcggggttatgttgaaaataggggaaggatgtcggcagcggaggaggagtcaagtgaggcaggcaccatggacgaagaggttttgaagctcaaagagaaggtttgcactatcactaatgttttctctattactagatattctgcattgcattctaactggtgctgtgtcagctttctcaatgcctactcgaaagggagctgctccttacagagaaaaagagatggaggatcaagaagaaacttctcaagcggggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

497

Amino Acids

54.64

Weight (kDa)

5.56

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 180 - 256 1.5e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 990, 1042
AccB1I GGYRCC 1 cut(s) 1298
AciI CCGC 6 cut(s) 1119, 1160, 1196, 1237, 1274, 1485
AclWI GGATC 4 cut(s) 40, 672, 776, 1471
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 3 cut(s) 642, 1056, 1223
AfiI CCNNNNNNNGG 5 cut(s) 397, 404, 821, 881, 1039
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 6 cut(s) 302, 557, 847, 890, 1250, 1321
AhdI GACNNNNNGTC 1 cut(s) 691
AhlI ACTAGT 1 cut(s) 637
AjnI CCWGG 3 cut(s) 411, 816, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 9 cut(s) 263, 509, 560, 907, 988, 1127, 1324, 1407, 1434
AluI AGCT 9 cut(s) 263, 509, 560, 907, 988, 1127, 1324, 1407, 1434
Alw26I GTCTC 4 cut(s) 43, 103, 652, 678
AlwI GGATC 4 cut(s) 40, 672, 776, 1471
AlwNI CAGNNNCTG 1 cut(s) 982
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 3 cut(s) 24, 883, 1142
ApeKI GCWGC 4 cut(s) 182, 985, 1271, 1434
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 25, 516, 833, 979, 1142
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 4 cut(s) 49, 590, 996, 1149
AsuII TTCGAA 1 cut(s) 900
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 3 cut(s) 516, 833, 979
BanI GGYRCC 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BbvI GCAGC 4 cut(s) 169, 997, 1283, 1421
BccI CCATC 8 cut(s) 284, 289, 385, 608, 815, 914, 1168, 1451
BceAI ACGGC 2 cut(s) 59, 1229
BciT130I CCWGG 3 cut(s) 413, 818, 882
BclI TGATCA 1 cut(s) 1084
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 4 cut(s) 43, 103, 652, 678
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 5 cut(s) 173, 561, 638, 668, 1368
BfmI CTRYAG 2 cut(s) 911, 983
BfuAI ACCTGC 2 cut(s) 990, 1042
BisI GCNGC 5 cut(s) 183, 986, 1197, 1272, 1435
BlsI GCNGC 5 cut(s) 184, 987, 1198, 1273, 1436
Bme1390I CCNGG 4 cut(s) 399, 413, 818, 882
Bme18I GGWCC 3 cut(s) 516, 833, 979
BmeRI GACNNNNNGTC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 5 cut(s) 25, 516, 833, 979, 1142
BmiI GGNNCC 2 cut(s) 1179, 1300
BmrFI CCNGG 4 cut(s) 399, 413, 818, 882
BmsI GCATC 3 cut(s) 55, 694, 1219
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 1094
Bpu14I TTCGAA 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 1202, 1465
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 6 cut(s) 28, 398, 816, 949, 1207, 1302
BsaXI ACNNNNNCTCC 6 cut(s) 1092, 1116, 1122, 1146, 1268, 1298
Bsc4I CCNNNNNNNGG 5 cut(s) 397, 404, 821, 881, 1039
Bse1I ACTGG 2 cut(s) 637, 1397
Bse3DI GCAATG 1 cut(s) 1379
BseBI CCWGG 3 cut(s) 413, 818, 882
BseDI CCNNGG 6 cut(s) 28, 398, 816, 949, 1207, 1302
BseGI GGATG 5 cut(s) 300, 553, 682, 826, 1269
BseLI CCNNNNNNNGG 5 cut(s) 397, 404, 821, 881, 1039
BseMI GCAATG 1 cut(s) 1379
BseMII CTCAG 4 cut(s) 108, 213, 510, 519
BseNI ACTGG 2 cut(s) 637, 1397
BseRI GAGGAG 8 cut(s) 61, 64, 67, 70, 199, 1193, 1292, 1295
BseXI GCAGC 4 cut(s) 169, 997, 1283, 1421
BshFI GGCC 3 cut(s) 26, 885, 1144
BshNI GGYRCC 1 cut(s) 1298
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 2 cut(s) 398, 1122
BslI CCNNNNNNNGG 5 cut(s) 397, 404, 821, 881, 1039
BsmAI GTCTC 4 cut(s) 43, 103, 652, 678
BsmI GAATGC 1 cut(s) 1384
BsnI GGCC 3 cut(s) 26, 885, 1144
BsoBI CYCGRG 1 cut(s) 1038
Bsp119I TTCGAA 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
Bsp19I CCATGG 1 cut(s) 1302
BspACI CCGC 6 cut(s) 1119, 1160, 1196, 1237, 1274, 1485
BspANI GGCC 3 cut(s) 26, 885, 1144
BspCNI CTCAG 4 cut(s) 107, 214, 509, 520
BspLI GGNNCC 2 cut(s) 1179, 1300
BspMAI CTGCAG 1 cut(s) 987
BspMI ACCTGC 2 cut(s) 990, 1042
BspPI GGATC 4 cut(s) 40, 672, 776, 1471
BspQI GCTCTTC 1 cut(s) 897
BspT104I TTCGAA 1 cut(s) 900
BspT107I GGYRCC 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 1379
BsrI ACTGG 2 cut(s) 637, 1397
BssECI CCNNGG 6 cut(s) 28, 398, 816, 949, 1207, 1302
BssMI GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 4 cut(s) 28, 949, 1207, 1302
Bst2UI CCWGG 3 cut(s) 413, 818, 882
Bst4CI ACNGT 5 cut(s) 269, 314, 587, 771, 833
Bst6I CTCTTC 6 cut(s) 106, 155, 468, 882, 897, 1305
BstACI GRCGYC 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 900
BstC8I GCNNGC 3 cut(s) 187, 228, 1297
BstDEI CTNAG 4 cut(s) 94, 222, 496, 528
BstDSI CCRYGG 1 cut(s) 1302
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 5 cut(s) 300, 553, 682, 826, 1269
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 7 cut(s) 35, 667, 723, 736, 784, 1087, 1466
BstMAI GTCTC 4 cut(s) 43, 103, 652, 678
BstMBI GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
BstMWI GCNNNNNNNGC 4 cut(s) 23, 186, 991, 1404
BstNI CCWGG 3 cut(s) 413, 818, 882
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 4 cut(s) 397, 411, 816, 880
BstSFI CTRYAG 2 cut(s) 911, 983
BstV1I GCAGC 4 cut(s) 169, 997, 1283, 1421
BstX2I RGATCY 2 cut(s) 664, 781
BstYI RGATCY 2 cut(s) 664, 781
BsuRI GGCC 3 cut(s) 26, 885, 1144
BtgI CCRYGG 1 cut(s) 1302
BtgZI GCGATG 2 cut(s) 78, 717
BtsCI GGATG 5 cut(s) 300, 553, 682, 826, 1269
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 274, 319
BveI ACCTGC 2 cut(s) 990, 1042
Cac8I GCNNGC 3 cut(s) 187, 228, 1297
CaiI CAGNNNCTG 1 cut(s) 982
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 25, 516, 833, 979, 1142
CseI GACGC 1 cut(s) 397
Csp6I GTAC 3 cut(s) 641, 1055, 1222
CviAII CATG 3 cut(s) 644, 660, 1303
CviQI GTAC 3 cut(s) 641, 1055, 1222
DdeI CTNAG 4 cut(s) 94, 222, 496, 528
DpnI GATC 7 cut(s) 34, 666, 722, 735, 783, 1086, 1465
DpnII GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 6 cut(s) 106, 155, 468, 882, 897, 1305
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 6 cut(s) 106, 155, 468, 882, 897, 1305
Eco130I CCWWGG 4 cut(s) 28, 949, 1207, 1302
Eco147I AGGCCT 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 3 cut(s) 516, 833, 979
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 1038
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 979
EcoRII CCWGG 3 cut(s) 411, 816, 880
EcoT14I CCWWGG 4 cut(s) 28, 949, 1207, 1302
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 4 cut(s) 28, 949, 1207, 1302
FaeI CATG 3 cut(s) 647, 663, 1306
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 771, 803
FatI CATG 3 cut(s) 643, 659, 1302
FauI CCCGC 3 cut(s) 1126, 1230, 1478
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 5 cut(s) 183, 986, 1197, 1272, 1435
FokI GGATG 5 cut(s) 307, 560, 689, 833, 1276
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 5 cut(s) 183, 986, 1197, 1272, 1435
FspBI CTAG 5 cut(s) 173, 561, 638, 668, 1368
GlaI GCGC 1 cut(s) 181
GluI GCNGC 5 cut(s) 183, 986, 1197, 1272, 1435
GsuI CTGGAG 1 cut(s) 1094
HaeIII GGCC 3 cut(s) 26, 885, 1144
HapII CCGG 2 cut(s) 398, 1122
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 3 cut(s) 647, 663, 1306
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 8 cut(s) 206, 279, 750, 839, 939, 1154, 1183, 1283
HpaII CCGG 2 cut(s) 398, 1122
HphI GGTGA 4 cut(s) 49, 590, 996, 1149
Hpy166II GTNNAC 2 cut(s) 598, 1026
Hpy188I TCNGA 6 cut(s) 234, 499, 529, 652, 697, 829
Hpy188III TCNNGA 8 cut(s) 611, 674, 737, 747, 836, 1088, 1187, 1467
Hpy8I GTNNAC 2 cut(s) 598, 1026
HpyAV CCTTC 6 cut(s) 244, 296, 1041, 1085, 1254, 1327
HpyCH4III ACNGT 5 cut(s) 269, 314, 587, 771, 833
HpyCH4V TGCA 7 cut(s) 17, 202, 707, 985, 1341, 1379, 1384
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 186, 991, 1404
HpyF3I CTNAG 4 cut(s) 94, 222, 496, 528
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 3 cut(s) 647, 663, 1306
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 4 cut(s) 1124, 1177, 1431, 1442
Lsp1109I GCAGC 4 cut(s) 169, 997, 1283, 1421
LweI GCATC 3 cut(s) 55, 694, 1219
MaeI CTAG 5 cut(s) 173, 561, 638, 668, 1368
MalI GATC 7 cut(s) 34, 666, 722, 735, 783, 1086, 1465
MboI GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 2 cut(s) 664, 781
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 4 cut(s) 368, 534, 762, 1000
MlyI GAGTC 3 cut(s) 200, 1192, 1292
MmeI TCCRAC 3 cut(s) 147, 675, 753
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 6 cut(s) 113, 453, 717, 726, 765, 1014
MslI CAYNNNNRTG 1 cut(s) 1167
MspA1I CMGCKG 1 cut(s) 1274
MspI CCGG 2 cut(s) 398, 1122
MspR9I CCNGG 4 cut(s) 399, 413, 818, 882
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 1384
MvaI CCWGG 3 cut(s) 413, 818, 882
MwoI GCNNNNNNNGC 4 cut(s) 23, 186, 991, 1404
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
NlaIII CATG 3 cut(s) 647, 663, 1306
NlaIV GGNNCC 2 cut(s) 1179, 1300
NmeAIII GCCGAG 2 cut(s) 1206, 1213
NspI RCATGY 1 cut(s) 647
NspV TTCGAA 1 cut(s) 900
PceI AGGCCT 1 cut(s) 885
PciI ACATGT 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 897
PctI GAATGC 1 cut(s) 1384
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 279, 750, 839, 939, 1154
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 5 cut(s) 184, 987, 1198, 1273, 1436
PleI GAGTC 3 cut(s) 200, 1191, 1291
PpsI GAGTC 3 cut(s) 200, 1191, 1291
PpuMI RGGWCCY 1 cut(s) 979
PscI ACATGT 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 979
Psp6I CCWGG 3 cut(s) 411, 816, 880
PspGI CCWGG 3 cut(s) 411, 816, 880
PspN4I GGNNCC 2 cut(s) 1179, 1300
PspPI GGNCC 5 cut(s) 25, 516, 833, 979, 1142
PspPPI RGGWCCY 1 cut(s) 979
PstI CTGCAG 1 cut(s) 987
PstNI CAGNNNCTG 1 cut(s) 982
PsuI RGATCY 2 cut(s) 664, 781
RsaI GTAC 3 cut(s) 642, 1056, 1223
RsaNI GTAC 3 cut(s) 641, 1055, 1222
RseI CAYNNNNRTG 1 cut(s) 1167
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 6 cut(s) 113, 453, 717, 726, 765, 1014
SatI GCNGC 5 cut(s) 183, 986, 1197, 1272, 1435
Sau3AI GATC 7 cut(s) 32, 664, 720, 733, 781, 1084, 1463
Sau96I GGNCC 5 cut(s) 25, 516, 833, 979, 1142
SchI GAGTC 3 cut(s) 200, 1192, 1292
ScrFI CCNGG 4 cut(s) 399, 413, 818, 882
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 3 cut(s) 55, 694, 1219
SfcI CTRYAG 2 cut(s) 911, 983
SfuI TTCGAA 1 cut(s) 900
SinI GGWCC 3 cut(s) 516, 833, 979
SmiMI CAYNNNNRTG 1 cut(s) 1167
SmlI CTYRAG 2 cut(s) 1217, 1480
SmoI CTYRAG 2 cut(s) 1217, 1480
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 4 cut(s) 368, 534, 762, 1000
SseBI AGGCCT 1 cut(s) 885
SsiI CCGC 6 cut(s) 1119, 1160, 1196, 1237, 1274, 1485
SspI AATATT 1 cut(s) 730
SspMI CTAG 5 cut(s) 173, 561, 638, 668, 1368
StuI AGGCCT 1 cut(s) 885
StyD4I CCNGG 4 cut(s) 397, 411, 816, 880
StyI CCWWGG 4 cut(s) 28, 949, 1207, 1302
TaaI ACNGT 5 cut(s) 269, 314, 587, 771, 833
TaqI TCGA 3 cut(s) 736, 900, 1424
TasI AATT 4 cut(s) 368, 534, 762, 1000
TatI WGTACW 2 cut(s) 640, 1221
TauI GCSGC 1 cut(s) 1199
TfiI GAWTC 5 cut(s) 279, 750, 839, 939, 1154
Tru1I TTAA 6 cut(s) 113, 453, 717, 726, 765, 1014
Tru9I TTAA 6 cut(s) 113, 453, 717, 726, 765, 1014
TscAI CASTG 3 cut(s) 19, 274, 319
TseI GCWGC 4 cut(s) 182, 985, 1271, 1434
TspDTI ATGAA 5 cut(s) 43, 271, 326, 486, 648
TspRI CASTG 3 cut(s) 19, 274, 319
VpaK11BI GGWCC 3 cut(s) 516, 833, 979
VspI ATTAAT 1 cut(s) 726
XagI CCTNNNNNAGG 1 cut(s) 879
XceI RCATGY 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 5 cut(s) 173, 561, 638, 668, 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.