Rmu_sc0002021.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002021.1
OG0008985
Physical Location & Seq
Reverse (-)
2 .. 832
831 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
atgaaacaaccatcgacacaaggtaggacatgtgtattggaagccaagcagttccacatggttaaactagaacagttagtagtctgtccaaacccgaataggaaacctgacgtcaccgccggtcgaatccacggccagatttccattccctttccgagcccgatccttttccccatctctcacccactcccctacaacacctctcgcttccactccaacagtccaactctctctctctctctctcaacccgaacccgacccatggagcgcccgacccggccctacgccccgggcggccgcgaggactgctggagcgacgacgccacgtcagtgctgataacggcgtggggcgaccgttacctccgcctcaaccgcggcaacctccgccagaaggactggaaggaggtggcggactccgtcaactcccgccgcgacggcgccgttttcaagaccgacgggcagtgcaagaaccgaatcgacacgctgaagaagaagtacaagctcgaaaagtccaagcccttcccctccacgtggatcttctacgacagcctcgactcgctcatcggagtcccctcctcaaacgccgccgctttgaccagacccccgaagccactcacactcgccctgaccctcaagtccgccgccgaccccagtcccctgggtttccgccgctgcggctccacggagagcgacggcgaggatgacgtggaggggggaggagtagggttggcgggtggggcggcgtgtaggcaactggcgagggcgatcttgaagttcggggagatttatgagaggatggagagttccaagcaggagcagatggttgaactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

277

Amino Acids

30.7

Weight (kDa)

9.39

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 102 - 187 6.6e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 634
AatII GACGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 437
AccII CGCG 3 cut(s) 300, 375, 432
AclWI GGATC 2 cut(s) 157, 542
AcoI YGGCCR 2 cut(s) 133, 295
AcuI CTGAAG 1 cut(s) 506
AcvI CACGTG 1 cut(s) 531
AcyI GRCGYC 3 cut(s) 111, 321, 438
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 3 cut(s) 262, 391, 531
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 448, 772, 827
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 2 cut(s) 327, 706
AjnI CCWGG 1 cut(s) 657
AleI CACNNNNGTG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 787, 819
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
AlwI GGATC 2 cut(s) 157, 542
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 3 cut(s) 133, 278, 295
ApeKI GCWGC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 270, 440
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 3 cut(s) 277, 290, 291
AsuHPI GGTGA 2 cut(s) 106, 173
AvaI CYCGRG 1 cut(s) 289
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
BbrPI CACGTG 1 cut(s) 531
BbvI GCAGC 1 cut(s) 659
BccI CCATC 4 cut(s) 19, 182, 790, 814
BceAI ACGGC 5 cut(s) 148, 357, 425, 451, 709
BciT130I CCWGG 1 cut(s) 659
BcnI CCSGG 3 cut(s) 277, 290, 291
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 2 cut(s) 271, 441
BglI GCCNNNNNGGC 2 cut(s) 435, 675
Bme1390I CCNGG 4 cut(s) 277, 290, 291, 659
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 289
BmgBI CACGTC 2 cut(s) 327, 706
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 439, 679
BmrFI CCNGG 4 cut(s) 277, 290, 291, 659
BmrI ACTGGG 1 cut(s) 645
BmuI ACTGGG 1 cut(s) 645
BoxI GACNNNNGTC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 3 cut(s) 277, 290, 291
BsaAI YACGTR 1 cut(s) 531
BsaHI GRCGYC 3 cut(s) 111, 321, 438
BsaJI CCNNGG 8 cut(s) 130, 261, 288, 289, 373, 657, 658, 681
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 391, 531
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 401, 651, 759
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 8 cut(s) 130, 261, 288, 289, 373, 657, 658, 681
BseGI GGATG 2 cut(s) 706, 801
BseLI CCNNNNNNNGG 3 cut(s) 262, 391, 531
BseNI ACTGG 3 cut(s) 401, 651, 759
BseRI GAGGAG 2 cut(s) 565, 732
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 659
Bsh1236I CGCG 3 cut(s) 300, 375, 432
Bsh1285I CGRYCG 3 cut(s) 124, 298, 355
BshFI GGCC 3 cut(s) 135, 280, 297
BshNI GGYRCC 1 cut(s) 437
BsiEI CGRYCG 3 cut(s) 124, 298, 355
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 3 cut(s) 120, 277, 290
BslFI GGGAC 2 cut(s) 554, 639
BslI CCNNNNNNNGG 3 cut(s) 262, 391, 531
BsmFI GGGAC 2 cut(s) 554, 639
BsnI GGCC 3 cut(s) 135, 280, 297
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 162, 534, 765
Bsp19I CCATGG 1 cut(s) 261
BspANI GGCC 3 cut(s) 135, 280, 297
BspFNI CGCG 3 cut(s) 300, 375, 432
BspLI GGNNCC 2 cut(s) 439, 679
BspPI GGATC 2 cut(s) 157, 542
BspT107I GGYRCC 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 401, 651, 759
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 8 cut(s) 130, 261, 288, 289, 373, 657, 658, 681
BssMI GATC 3 cut(s) 162, 534, 765
BssNI GRCGYC 3 cut(s) 111, 321, 438
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 75, 221, 356
BstACI GRCGYC 3 cut(s) 111, 321, 438
BstBAI YACGTR 1 cut(s) 531
BstDSI CCRYGG 4 cut(s) 130, 261, 373, 681
BstF5I GGATG 2 cut(s) 706, 801
BstFNI CGCG 3 cut(s) 300, 375, 432
BstH2I RGCGCY 2 cut(s) 271, 441
BstHHI GCGC 2 cut(s) 270, 440
BstKTI GATC 3 cut(s) 165, 537, 768
BstMBI GATC 3 cut(s) 162, 534, 765
BstMCI CGRYCG 3 cut(s) 124, 298, 355
BstMWI GCNNNNNNNGC 6 cut(s) 306, 372, 384, 435, 675, 737
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 33
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 4 cut(s) 275, 288, 289, 657
BstUI CGCG 3 cut(s) 300, 375, 432
BstV1I GCAGC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 3 cut(s) 135, 280, 297
BtgI CCRYGG 4 cut(s) 130, 261, 373, 681
BtrI CACGTC 2 cut(s) 327, 706
BtsCI GGATG 2 cut(s) 706, 801
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 2 cut(s) 336, 467
CciNI GCGGCCGC 1 cut(s) 295
CfoI GCGC 2 cut(s) 270, 440
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 376
Cfr9I CCCGGG 1 cut(s) 289
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 496
CviAII CATG 3 cut(s) 30, 58, 262
CviQI GTAC 1 cut(s) 496
DinI GGCGCC 1 cut(s) 439
DpnI GATC 3 cut(s) 164, 536, 767
DpnII GATC 3 cut(s) 162, 534, 765
DrdI GACNNNNNNGTC 1 cut(s) 634
DriI GACNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 2 cut(s) 133, 295
EagI CGGCCG 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 325
EciI GGCGGA 5 cut(s) 353, 374, 425, 628, 656
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 506
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 439
EheI GGCGCC 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 33, 61, 265
FaiI YATR 4 cut(s) 31, 59, 263, 789
FaqI GGGAC 2 cut(s) 554, 639
FatI CATG 3 cut(s) 29, 57, 261
FauI CCCGC 2 cut(s) 434, 724
FokI GGATG 2 cut(s) 713, 808
FriOI GRGCYC 1 cut(s) 161
FspBI CTAG 1 cut(s) 68
GlaI GCGC 2 cut(s) 269, 439
GsuI CTGGAG 1 cut(s) 331
HaeII RGCGCY 2 cut(s) 271, 441
HaeIII GGCC 3 cut(s) 135, 280, 297
HapII CCGG 3 cut(s) 120, 277, 290
HgaI GACGC 1 cut(s) 329
HhaI GCGC 2 cut(s) 270, 440
Hin1I GRCGYC 3 cut(s) 111, 321, 438
Hin1II CATG 3 cut(s) 33, 61, 265
Hin6I GCGC 2 cut(s) 268, 438
HinP1I GCGC 2 cut(s) 268, 438
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 5 cut(s) 126, 413, 474, 554, 567
HpaII CCGG 3 cut(s) 120, 277, 290
HphI GGTGA 2 cut(s) 106, 173
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 156, 566
Hpy188III TCNNGA 2 cut(s) 448, 769
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 5 cut(s) 320, 323, 437, 458, 695
HpyAV CCTTC 3 cut(s) 385, 394, 529
HpyCH4III ACNGT 3 cut(s) 75, 221, 356
HpyCH4IV ACGT 4 cut(s) 111, 326, 530, 705
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 306, 372, 384, 435, 675, 737
HpySE526I ACGT 4 cut(s) 111, 326, 530, 705
Hsp92I GRCGYC 3 cut(s) 111, 321, 438
Hsp92II CATG 3 cut(s) 33, 61, 265
HspAI GCGC 2 cut(s) 268, 438
KasI GGCGCC 1 cut(s) 437
KspI CCGCGG 1 cut(s) 376
Kzo9I GATC 3 cut(s) 162, 534, 765
LmnI GCTCC 4 cut(s) 265, 312, 683, 814
Lsp1109I GCAGC 1 cut(s) 659
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 111, 326, 530, 705
MaeIII GTNAC 2 cut(s) 112, 356
MalI GATC 3 cut(s) 164, 536, 767
MboI GATC 3 cut(s) 162, 534, 765
MboII GAAGA 3 cut(s) 499, 502, 529
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 1 cut(s) 161
Mly113I GGCGCC 1 cut(s) 438
MlyI GAGTC 3 cut(s) 407, 548, 576
MmeI TCCRAC 2 cut(s) 240, 248
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 375, 672
MspI CCGG 3 cut(s) 120, 277, 290
MspR9I CCNGG 4 cut(s) 277, 290, 291, 659
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 3 cut(s) 300, 375, 432
MwoI GCNNNNNNNGC 6 cut(s) 306, 372, 384, 435, 675, 737
NarI GGCGCC 1 cut(s) 438
NciI CCSGG 3 cut(s) 277, 290, 291
NcoI CCATGG 1 cut(s) 261
NdeII GATC 3 cut(s) 162, 534, 765
NlaIII CATG 3 cut(s) 33, 61, 265
NlaIV GGNNCC 2 cut(s) 439, 679
NmuCI GTSAC 1 cut(s) 112
NotI GCGGCCGC 1 cut(s) 295
NspI RCATGY 1 cut(s) 33
OliI CACNNNNGTG 1 cut(s) 329
PasI CCCWGGG 1 cut(s) 658
PciI ACATGT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 2 cut(s) 126, 474
PflFI GACNNNGTC 1 cut(s) 416
PleI GAGTC 3 cut(s) 407, 548, 575
PluTI GGCGCC 1 cut(s) 441
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 3 cut(s) 407, 548, 575
Ppu21I YACGTR 1 cut(s) 531
PscI ACATGT 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 657
PspCI CACGTG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 2 cut(s) 439, 679
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 534
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 329
SacII CCGCGG 1 cut(s) 376
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 3 cut(s) 162, 534, 765
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 3 cut(s) 407, 548, 576
ScrFI CCNGG 4 cut(s) 277, 290, 291, 659
SduI GDGCHC 1 cut(s) 161
SfoI GGCGCC 1 cut(s) 439
Sfr303I CCGCGG 1 cut(s) 376
SgrBI CCGCGG 1 cut(s) 376
SmaI CCCGGG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SspDI GGCGCC 1 cut(s) 437
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 275, 288, 289, 657
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 75, 221, 356
TaiI ACGT 4 cut(s) 114, 329, 533, 708
TaqI TCGA 5 cut(s) 14, 124, 477, 504, 552
TaqII GACCGA 1 cut(s) 467
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 2 cut(s) 126, 474
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 336, 467
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 672
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 406, 698
TspMI CCCGGG 1 cut(s) 289
TspRI CASTG 2 cut(s) 336, 467
Tth111I GACNNNGTC 1 cut(s) 416
XceI RCATGY 1 cut(s) 33
XmaI CCCGGG 1 cut(s) 289
XspI CTAG 1 cut(s) 68
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.