Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002029.1

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Forward (+)

76972 .. 77874

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgcatatgagtggaaagatggtttgttttgattctgtaaatagttatctcctgtctctggcaaagagctggggaagtaaggaagaggggctggatttattttcacttgtcatggcaaatgatagtacccaagatgatgagctgaatatgttcccaactgatgtaggagaaggtgattacaaatatcagtaccaaataggttctacaccttattttgaatcgcatgggaatacccaaagtacagaggagagcagcagcaatgcaaataatacttccagttacggagttatacacatgccagatctccatttactggaggatgatttaaagcttatgggacagtttataaaggactacagagtacctcctgagatctggttctcacttctgacaagaatcagacatgcccatgccttctgttcaccaagaacctgcaagctgtacaggaggatatgccttcttgcatttactgtgcttgttcaagctagtgatgctcctgaagaatttctgtctttctttgctaataagccagactatattagtagatcaattagaattgtgccatcagaagaagtagtttctggaaccatcagaacaaatacaatgcttgccttatcgaagatcatgcaccaaccctcttgtccactgcatcacattgtagtttctgcttctgcaaaactgggggcttctacttttgcatcaattgcgttggatcacatgagttatggggggcatacaggttcttctggatatgaggcttctatatcgacaaaatattgtgactttgcggaagtgattgagttcattgatgtcagtctactggagagaccacattcatgtaattcctgttttcctcaatttcttgtacagacatcaagttacccagtcagttttgacgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

300

Amino Acids

33.48

Weight (kDa)

5.29

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF908	PF06012	73 - 211	1.9e-10	Domain of Unknown Function (DUF908)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	817
AciI	CCGC	1 cut(s)	788
AclWI	GGATC	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	6 cut(s)	127, 191, 241, 363, 443, 867
AfiI	CCNNNNNNNGG	2 cut(s)	58, 313
AgsI	TTSAA	2 cut(s)	218, 482
AluBI	AGCT	5 cut(s)	69, 142, 331, 439, 485
AluI	AGCT	5 cut(s)	69, 142, 331, 439, 485
Alw26I	GTCTC	2 cut(s)	60, 820
AlwI	GGATC	1 cut(s)	720
ApeKI	GCWGC	2 cut(s)	252, 255
ApoI	RAATTY	1 cut(s)	503
Asp700I	GAANNNNTTC	2 cut(s)	149, 504
AsuHPI	GGTGA	2 cut(s)	185, 414
BbvI	GCAGC	2 cut(s)	264, 267
BccI	CCATC	3 cut(s)	13, 571, 596
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BcoDI	GTCTC	2 cut(s)	60, 820
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	2 cut(s)	301, 372
BisI	GCNGC	2 cut(s)	253, 256
BlsI	GCNGC	2 cut(s)	254, 257
BmiI	GGNNCC	1 cut(s)	586
BmrI	ACTGGG	2 cut(s)	689, 878
BmsI	GCATC	3 cut(s)	481, 658, 707
BmuI	ACTGGG	2 cut(s)	689, 878
BpmI	CTGGAG	2 cut(s)	335, 842
BsaI	GGTCTC	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 313
Bse1I	ACTGG	5 cut(s)	276, 318, 684, 825, 884
Bse3DI	GCAATG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	58, 313
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	5 cut(s)	276, 318, 684, 825, 884
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	264, 267
BseYI	CCCAGC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	58, 313
BsmAI	GTCTC	2 cut(s)	60, 820
BsmFI	GGGAC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	820
Bsp1407I	TGTACA	2 cut(s)	441, 865
Bsp143I	GATC	5 cut(s)	301, 372, 545, 621, 712
BspACI	CCGC	1 cut(s)	788
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	720
BspTNI	GGTCTC	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	265
BsrGI	TGTACA	2 cut(s)	441, 865
BsrI	ACTGG	5 cut(s)	276, 318, 684, 825, 884
BssMI	GATC	5 cut(s)	301, 372, 545, 621, 712
Bst4CI	ACNGT	2 cut(s)	342, 472
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstAUI	TGTACA	2 cut(s)	441, 865
BstC8I	GCNNGC	2 cut(s)	437, 609
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	5 cut(s)	304, 375, 548, 624, 715
BstMAI	GTCTC	2 cut(s)	60, 820
BstMBI	GATC	5 cut(s)	301, 372, 545, 621, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 704
BstNSI	RCATGY	2 cut(s)	298, 407
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	264, 267
BstX2I	RGATCY	2 cut(s)	301, 372
BstYI	RGATCY	2 cut(s)	301, 372
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	1 cut(s)	644
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	437, 609
Csp6I	GTAC	6 cut(s)	126, 190, 240, 362, 442, 866
CviAII	CATG	8 cut(s)	112, 224, 295, 404, 410, 625, 718, 837
CviJI	RGCY	9 cut(s)	69, 91, 142, 331, 439, 485, 529, 686, 758
CviKI_1	RGCY	9 cut(s)	69, 91, 142, 331, 439, 485, 529, 686, 758
CviQI	GTAC	6 cut(s)	126, 190, 240, 362, 442, 866
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	5 cut(s)	303, 374, 547, 623, 714
DpnII	GATC	5 cut(s)	301, 372, 545, 621, 712
DraI	TTTAAA	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	820
Eco57I	CTGAAG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	8 cut(s)	115, 227, 298, 407, 413, 628, 721, 840
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	8 cut(s)	111, 223, 294, 403, 409, 624, 717, 836
FauNDI	CATATG	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	2 cut(s)	253, 256
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	253, 256
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	253, 256
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	2 cut(s)	335, 842
Hin1II	CATG	8 cut(s)	115, 227, 298, 407, 413, 628, 721, 840
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	32, 218, 396
HphI	GGTGA	2 cut(s)	185, 414
Hpy166II	GTNNAC	3 cut(s)	422, 644, 818
Hpy188I	TCNGA	4 cut(s)	390, 401, 568, 593
Hpy188III	TCNNGA	4 cut(s)	368, 497, 582, 747
Hpy8I	GTNNAC	3 cut(s)	422, 644, 818
HpyAV	CCTTC	3 cut(s)	164, 424, 467
HpyCH4III	ACNGT	2 cut(s)	342, 472
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	8 cut(s)	4, 263, 435, 464, 628, 649, 674, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 704
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	8 cut(s)	115, 227, 298, 407, 413, 628, 721, 840
Kzo9I	GATC	5 cut(s)	301, 372, 545, 621, 712
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	264, 267
LweI	GCATC	3 cut(s)	481, 658, 707
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	3 cut(s)	278, 779, 878
MalI	GATC	5 cut(s)	303, 374, 547, 623, 714
MboI	GATC	5 cut(s)	301, 372, 545, 621, 712
MboII	GAAGA	5 cut(s)	95, 512, 581, 631, 735
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	2 cut(s)	301, 372
MluCI	AATT	6 cut(s)	503, 549, 555, 702, 841, 857
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	79, 238, 310, 375, 441, 646, 748, 864
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	149, 504
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	3 cut(s)	9, 408, 835
MunI	CAATTG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	491, 704
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	5 cut(s)	301, 372, 545, 621, 712
NlaIII	CATG	8 cut(s)	115, 227, 298, 407, 413, 628, 721, 840
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	779
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	298, 407
PdmI	GAANNNNTTC	2 cut(s)	149, 504
PfeI	GAWTC	3 cut(s)	32, 218, 396
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	254, 257
PsiI	TTATAA	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	301, 372
RsaI	GTAC	6 cut(s)	127, 191, 241, 363, 443, 867
RsaNI	GTAC	6 cut(s)	126, 190, 240, 362, 442, 866
RseI	CAYNNNNRTG	3 cut(s)	9, 408, 835
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	253, 256
Sau3AI	GATC	5 cut(s)	301, 372, 545, 621, 712
SfaNI	GCATC	3 cut(s)	481, 658, 707
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	3 cut(s)	9, 408, 835
Sse9I	AATT	6 cut(s)	503, 549, 555, 702, 841, 857
SsiI	CCGC	1 cut(s)	788
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	342, 472
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	2 cut(s)	617, 767
TasI	AATT	6 cut(s)	503, 549, 555, 702, 841, 857
TatI	WGTACW	3 cut(s)	239, 441, 865
TfiI	GAWTC	3 cut(s)	32, 218, 396
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	2 cut(s)	252, 255
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	2 cut(s)	793, 825
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	2 cut(s)	298, 407
XmiI	GTMKAC	1 cut(s)	817
XmnI	GAANNNNTTC	2 cut(s)	149, 504
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.