Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0010927

Physical Location & Seq

Genomic Coordinates Forward (+)

92 .. 2353

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

atgcccaatgcagagttgggtttgaagttctttgactgggctttccggcgaccctattgctgctctccaaatgggttggcgtattcttcactgttgaagcttttggcgaggtttggagtggttgcggagattgagttggtgctgcagagcatgaagttggaacaagtagagccgagtaaggatgctttgagctttgtgattcgagtttacgcggattctgggttcgtcgataaggctcttgaattgtatagttttggggtgaagctgtgtggttttgttccgagtgttttcgcatgcaattcgttgcttaacacgcttgtgaagattgggagagttgatgtcgcacgccaggtgtatgatgaaatgtctgagaaaggtggtggtgatggtgagcatgtgtgtatagataactacagtacttgtatcatggtgagggggttgtgtaaggaagggaaggttgaagaagggagaaggttgattgaggagaggtggggagagaattgtgtgccgaatgttgtgttctacaatacgcttattgatggatattgtaagagaggtgaggttgaaaatgctaatgggatgtttaaggagttgaaattgaaggggtttctgcctacattgcaaacctatggagctttgattaatgggtattgcaaagtagggaactttgtagcgattgataggcttttgatggaaatgaaggagagaggtttgagggtcaatgtacaggtacataatactatagttgaggctagatgtaagcacgatagctgtgcaaccgcggttgatactgtagcaaggatgattgagagtggttgtgagccggatattacaacctataatattttgattaatagttcatgtaagaaagggaaggttgaggaagcggaggagtttctacagcatgcaatgaagaggggattggttccgaatgagtttagttatactcctgtttttcaagtctattgcagacgaggggaacactgtagggccctggatttgcttgttgagatgacaaaaagaggtcacaaacctgatttggttgcctttggagctttgattcatggacatgttgtttctggggaagttgattatgcattgacagtccgggacagaatgatagaaaatggaatactccccgatgcttgcatttacaatgtgttgatgagtggcctttgcaagaaagggaggcttcctactgccaaactgctgcttggtcagatgcttgaccaaaatgtactacctgatgcatttgtctacgccacattggtagatgggttaatcagaaatgggaaccttgaggaggctaaaaatatattcgagttaacaattgaaaagggcctagatcctggtgttgtggggtacaatgctatgatcaagggtttctgcaaatttggaacaatgaatgatgcactgtcattcctcgaaaagatgaagaaaaggaatcatcatcctgatgggtttacttactccacaataattgatgggtatgtcaagcagcataatttggatgctgcactagaaatgtttaaacagatggtgaaacagagatgcaggccaaatgtcattacgtacacctccttgatcaatgggttttgccgcaaaggagattctgatggagctgtaaaaactttcgtagagatgcaatctcgtggtgtggagccaaatatagtcacgtacaccatacttattggaaacttttgcaaggaaggtaaacttgcaaaagcagcctccttttttgaactaatgctgaggaaaaagtgcagtcctaatgatgtcactatccattatttgctaaatgggtttacaaacattgcacctgctgcaatttcaaaggaagtgaatgaatctcaagaaaaggagaaatctatttttcttgatttctataaaaggatgatagccgatggatggtttcagaagtctgctgtctataattccattctcatttgtctttgtcagtatggaatggttgaagctgcattacagtttaacagtaagtttagaagtaaaggtattgatctagattctgtttcttttgcggctgtgctacatggtcttttcttgggaggaagatcaaaggactggaagaatatcatttattttaacttgaaggaaaaagaactccaaactgctgtcaaatactcgcatataatagatgcacagttccatggaggaagaatatctgaagctacacttgctttacggtcattagttgaagatgataagcctcaacatcaagaagtggaagacagagaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1 PPR PPR_1 PPR_2 PPR_3 p450

Protein Analysis

753

Amino Acids

84.57

Weight (kDa)

7.68

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 149	7.9e-08	PPR repeat family
PPR_3	PF13812	167 - 217	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	167 - 198	3.8e-11	PPR repeat
PPR_2	PF13041	170 - 219	8.6e-17	PPR repeat family
PPR	PF01535	173 - 203	1.2e-07	PPR repeat
PPR_2	PF13041	209 - 254	9.8e-08	PPR repeat family
PPR	PF01535	209 - 238	8.5e-06	PPR repeat
PPR_3	PF13812	228 - 285	1.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	241 - 289	1.9e-08	PPR repeat family
PPR_1	PF12854	272 - 301	8.5e-12	PPR repeat
PPR_2	PF13041	275 - 324	2.8e-12	PPR repeat family
PPR_2	PF13041	314 - 356	3.9e-07	PPR repeat family
PPR_3	PF13812	334 - 390	5.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	376 - 408	2.7e-07	PPR repeat
PPR_2	PF13041	380 - 428	3.8e-10	PPR repeat family
PPR_3	PF13812	404 - 462	7.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 479	5.3e-09	PPR repeat
PPR_2	PF13041	450 - 499	5.6e-17	PPR repeat family
PPR	PF01535	455 - 482	1.8e-06	PPR repeat
PPR_3	PF13812	475 - 531	8.8e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	482 - 514	2.2e-07	PPR repeat
PPR	PF01535	488 - 518	2.5e-06	PPR repeat
PPR_2	PF13041	488 - 534	5.5e-17	PPR repeat family
PPR_long	PF17177	499 - 600	9.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	518 - 549	3.2e-12	PPR repeat
PPR_2	PF13041	520 - 569	1.6e-19	PPR repeat family
PPR	PF01535	523 - 553	1.5e-08	PPR repeat
PPR_3	PF13812	546 - 602	4.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	551 - 583	4.2e-10	PPR repeat
PPR_2	PF13041	555 - 603	1.1e-13	PPR repeat family
PPR	PF01535	558 - 588	8.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0010927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52620
fragaria_vesca	FvH4_6g30030
malus_domestica	MD17G1208200.v1.1
prunus_persica	Prupe.3G082900_v2.0.a1
pyrus_communis	pycom17g21100
rosa_chinensis	RchiOBHm_Chr2g0136061 RchiOBHm_Chr2g0136071
rosa_laevigata	RLG00000019500
rosa_multiflora	Rmu_sc0002070.1_g000001 Rmu_sc0002070.1_g000002 Rmu_sc0002986.1_g000008 Rmu_sc0002986.1_g000009
rosa_roxburghii	Rroxscaffold_2G00108610
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379700 Rh2BG386200 Rh2CG365600 Rh2CG365700 Rh2DG402500
rosa_wichuraiana	Rw2G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1828
Acc36I	ACCTGC	1 cut(s)	1828
AccI	GTMKAC	1 cut(s)	1257
AccII	CGCG	2 cut(s)	212, 782
AciI	CCGC	7 cut(s)	125, 212, 780, 782, 887, 1600, 2039
AclWI	GGATC	1 cut(s)	1340
AcsI	RAATTY	1 cut(s)	1391
AcuI	CTGAAG	1 cut(s)	2205
AfaI	GTAC	7 cut(s)	418, 726, 732, 1239, 1364, 1574, 1679
AfiI	CCNNNNNNNGG	2 cut(s)	1303, 1908
AflIII	ACRYGT	1 cut(s)	1069
AjnI	CCWGG	3 cut(s)	348, 993, 1348
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AleI	CACNNNNGTG	1 cut(s)	317
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	9 cut(s)	100, 192, 265, 635, 771, 1055, 1622, 1976, 2189
AluI	AGCT	9 cut(s)	100, 192, 265, 635, 771, 1055, 1622, 1976, 2189
AlwI	GGATC	1 cut(s)	1340
AoxI	GGCC	4 cut(s)	990, 1171, 1339, 1556
ApaI	GGGCCC	1 cut(s)	994
ApeKI	GCWGC	8 cut(s)	60, 142, 1210, 1498, 1514, 1727, 1823, 1976
ApoI	RAATTY	1 cut(s)	1391
AseI	ATTAAT	2 cut(s)	642, 852
AspS9I	GGNCC	3 cut(s)	990, 991, 1339
AsuC2I	CCSGG	1 cut(s)	1109
AsuHPI	GGTGA	6 cut(s)	271, 395, 401, 442, 569, 1552
BaeGI	GKGCMC	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	994
BarI	GAAGNNNNNNTAC	2 cut(s)	1965, 1997
BauI	CACGAG	1 cut(s)	1650
BbsI	GAAGAC	1 cut(s)	2253
BbvCI	CCTCAGC	1 cut(s)	1751
BbvI	GCAGC	8 cut(s)	47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BcgI	CGANNNNNNTGC	6 cut(s)	39, 73, 282, 316, 755, 789
BciT130I	CCWGG	3 cut(s)	350, 995, 1350
BclI	TGATCA	2 cut(s)	1374, 1584
BcnI	CCSGG	1 cut(s)	1109
BfaI	CTAG	4 cut(s)	753, 1343, 1520, 2021
BfmI	CTRYAG	6 cut(s)	143, 412, 741, 792, 899, 985
BfuAI	ACCTGC	1 cut(s)	1828
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	4 cut(s)	350, 995, 1109, 1350
BmgT120I	GGNCC	3 cut(s)	990, 991, 1339
BmiI	GGNNCC	4 cut(s)	927, 992, 1295, 1662
BmrFI	CCNGG	4 cut(s)	350, 995, 1109, 1350
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	9 cut(s)	172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	2253
Bpu10I	CCTNAGC	1 cut(s)	1751
BpuEI	CTTGAG	2 cut(s)	1319, 1836
BpuMI	CCSGG	1 cut(s)	1109
BsaAI	YACGTR	2 cut(s)	1572, 1677
BsaJI	CCNNGG	3 cut(s)	780, 993, 2167
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	1303, 1908
Bse1I	ACTGG	2 cut(s)	41, 2087
Bse3DI	GCAATG	3 cut(s)	617, 915, 1812
BseBI	CCWGG	3 cut(s)	350, 995, 1350
BseDI	CCNNGG	3 cut(s)	780, 993, 2167
BseGI	GGATG	7 cut(s)	187, 585, 807, 1450, 1516, 1899, 1913
BseLI	CCNNNNNNNGG	2 cut(s)	1303, 1908
BseMI	GCAATG	3 cut(s)	617, 915, 1812
BseMII	CTCAG	2 cut(s)	360, 1742
BseNI	ACTGG	2 cut(s)	41, 2087
BseRI	GAGGAG	3 cut(s)	497, 905, 1316
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	8 cut(s)	47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BsgI	GTGCAG	2 cut(s)	1500, 1783
Bsh1236I	CGCG	2 cut(s)	212, 782
BshFI	GGCC	4 cut(s)	992, 1173, 1341, 1558
BsiSI	CCGG	3 cut(s)	46, 824, 1108
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	2 cut(s)	1303, 1908
BsmFI	GGGAC	1 cut(s)	1124
BsnI	GGCC	4 cut(s)	992, 1173, 1341, 1558
Bsp120I	GGGCCC	1 cut(s)	990
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
Bsp19I	CCATGG	1 cut(s)	2167
BspACI	CCGC	7 cut(s)	125, 212, 780, 782, 887, 1600, 2039
BspANI	GGCC	4 cut(s)	992, 1173, 1341, 1558
BspCNI	CTCAG	2 cut(s)	361, 1743
BspFNI	CGCG	2 cut(s)	212, 782
BspLI	GGNNCC	4 cut(s)	927, 992, 1295, 1662
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	1828
BspPI	GGATC	1 cut(s)	1340
BsrDI	GCAATG	3 cut(s)	617, 915, 1812
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	41, 2087
BssECI	CCNNGG	3 cut(s)	780, 993, 2167
BssMI	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
BssSI	CACGAG	1 cut(s)	1650
BssT1I	CCWWGG	1 cut(s)	2167
Bst2BI	CACGAG	1 cut(s)	1650
Bst2UI	CCWGG	3 cut(s)	350, 995, 1350
Bst6I	CTCTTC	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	1823
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	2 cut(s)	1572, 1677
BstC8I	GCNNGC	5 cut(s)	295, 346, 906, 1147, 1556
BstDEI	CTNAG	2 cut(s)	369, 1751
BstDSI	CCRYGG	2 cut(s)	780, 2167
BstENI	CCTNNNNNAGG	1 cut(s)	1301
BstF5I	GGATG	7 cut(s)	187, 585, 807, 1450, 1516, 1899, 1913
BstFNI	CGCG	2 cut(s)	212, 782
BstKTI	GATC	5 cut(s)	1348, 1377, 1587, 2020, 2075
BstMBI	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
BstMWI	GCNNNNNNNGC	6 cut(s)	313, 619, 1052, 1727, 1823, 2195
BstNI	CCWGG	3 cut(s)	350, 995, 1350
BstNSI	RCATGY	4 cut(s)	297, 398, 908, 1073
BstSCI	CCNGG	4 cut(s)	348, 993, 1107, 1348
BstSFI	CTRYAG	6 cut(s)	143, 412, 741, 792, 899, 985
BstSLI	GKGCMC	1 cut(s)	994
BstSNI	TACGTA	1 cut(s)	1572
BstUI	CGCG	2 cut(s)	212, 782
BstV1I	GCAGC	8 cut(s)	47, 129, 1197, 1501, 1510, 1739, 1810, 1963
BstV2I	GAAGAC	1 cut(s)	2253
BstX2I	RGATCY	1 cut(s)	1345
BstYI	RGATCY	1 cut(s)	1345
BsuRI	GGCC	4 cut(s)	992, 1173, 1341, 1558
BtgI	CCRYGG	2 cut(s)	780, 2167
BtsCI	GGATG	7 cut(s)	187, 585, 807, 1450, 1516, 1899, 1913
BtsIMutI	CAGTG	3 cut(s)	89, 982, 1412
BveI	ACCTGC	1 cut(s)	1828
Cac8I	GCNNGC	5 cut(s)	295, 346, 906, 1147, 1556
Cfr13I	GGNCC	3 cut(s)	990, 991, 1339
Cfr42I	CCGCGG	1 cut(s)	783
Csp6I	GTAC	7 cut(s)	417, 725, 731, 1238, 1363, 1573, 1678
CspCI	CAANNNNNGTGG	2 cut(s)	1462, 1497
CviQI	GTAC	7 cut(s)	417, 725, 731, 1238, 1363, 1573, 1678
DdeI	CTNAG	2 cut(s)	369, 1751
DpnI	GATC	5 cut(s)	1347, 1376, 1586, 2019, 2074
DpnII	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
DraI	TTTAAA	1 cut(s)	1531
Eam1104I	CTCTTC	1 cut(s)	908
EarI	CTCTTC	1 cut(s)	908
Eco105I	TACGTA	1 cut(s)	1572
Eco130I	CCWWGG	1 cut(s)	2167
Eco24I	GRGCYC	1 cut(s)	994
Eco57I	CTGAAG	1 cut(s)	2205
EcoNI	CCTNNNNNAGG	1 cut(s)	1301
EcoO109I	RGGNCCY	3 cut(s)	990, 991, 1339
EcoRII	CCWGG	3 cut(s)	348, 993, 1348
EcoT14I	CCWWGG	1 cut(s)	2167
EcoT22I	ATGCAT	2 cut(s)	1099, 1252
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	1 cut(s)	2167
FalI	AAGNNNNNCTT	6 cut(s)	1176, 1208, 1701, 1733, 2178, 2210
FaqI	GGGAC	1 cut(s)	1124
FbaI	TGATCA	2 cut(s)	1374, 1584
FblI	GTMKAC	1 cut(s)	1257
FokI	GGATG	7 cut(s)	194, 592, 814, 1437, 1523, 1906, 1920
FriOI	GRGCYC	1 cut(s)	994
FspBI	CTAG	4 cut(s)	753, 1343, 1520, 2021
HaeIII	GGCC	4 cut(s)	992, 1173, 1341, 1558
HapII	CCGG	3 cut(s)	46, 824, 1108
HincII	GTYRAC	1 cut(s)	1326
HindII	GTYRAC	1 cut(s)	1326
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	7 cut(s)	199, 215, 1060, 1444, 1610, 1847, 2024
HpaI	GTTAAC	1 cut(s)	1326
HpaII	CCGG	3 cut(s)	46, 824, 1108
HphI	GGTGA	6 cut(s)	271, 395, 401, 442, 569, 1552
Hpy166II	GTNNAC	8 cut(s)	208, 1258, 1326, 1464, 1575, 1680, 1715, 1806
Hpy188I	TCNGA	8 cut(s)	282, 370, 930, 1221, 1286, 1615, 1917, 2185
Hpy188III	TCNNGA	6 cut(s)	239, 1454, 1853, 1877, 2021, 2237
Hpy8I	GTNNAC	8 cut(s)	208, 1258, 1326, 1464, 1575, 1680, 1715, 1806
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	9 cut(s)	443, 448, 458, 465, 595, 694, 868, 1703, 2104
HpyCH4IV	ACGT	2 cut(s)	1571, 1676
HpyF10VI	GCNNNNNNNGC	6 cut(s)	313, 619, 1052, 1727, 1823, 2195
HpyF3I	CTNAG	2 cut(s)	369, 1751
HpySE526I	ACGT	2 cut(s)	1571, 1676
Ksp22I	TGATCA	2 cut(s)	1374, 1584
KspAI	GTTAAC	1 cut(s)	1326
KspI	CCGCGG	1 cut(s)	783
Kzo9I	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
LmnI	GCTCC	4 cut(s)	632, 1052, 1619, 1660
Lsp1109I	GCAGC	8 cut(s)	47, 129, 1197, 1501, 1510, 1739, 1810, 1963
LweI	GCATC	9 cut(s)	172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
MaeI	CTAG	4 cut(s)	753, 1343, 1520, 2021
MaeII	ACGT	2 cut(s)	1571, 1676
MaeIII	GTNAC	3 cut(s)	1025, 1672, 1777
MalI	GATC	5 cut(s)	1347, 1376, 1586, 2019, 2074
MboI	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
MfeI	CAATTG	1 cut(s)	1329
MflI	RGATCY	1 cut(s)	1345
MhlI	GDGCHC	1 cut(s)	994
MmeI	TCCRAC	1 cut(s)	138
Mph1103I	ATGCAT	2 cut(s)	1099, 1252
MseI	TTAA	9 cut(s)	309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
MslI	CAYNNNNRTG	3 cut(s)	317, 1068, 1455
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	3 cut(s)	46, 824, 1108
MspR9I	CCNGG	4 cut(s)	350, 995, 1109, 1350
MssI	GTTTAAAC	1 cut(s)	1531
MunI	CAATTG	1 cut(s)	1329
MvaI	CCWGG	3 cut(s)	350, 995, 1350
MvnI	CGCG	2 cut(s)	212, 782
MwoI	GCNNNNNNNGC	6 cut(s)	313, 619, 1052, 1727, 1823, 2195
NciI	CCSGG	1 cut(s)	1109
NcoI	CCATGG	1 cut(s)	2167
NdeII	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
NlaIV	GGNNCC	4 cut(s)	927, 992, 1295, 1662
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	3 cut(s)	1025, 1672, 1777
NsiI	ATGCAT	2 cut(s)	1099, 1252
NspI	RCATGY	4 cut(s)	297, 398, 908, 1073
OliI	CACNNNNGTG	1 cut(s)	317
PaeI	GCATGC	2 cut(s)	297, 908
PaqCI	CACCTGC	1 cut(s)	1828
PciI	ACATGT	1 cut(s)	1069
PfeI	GAWTC	7 cut(s)	199, 215, 1060, 1444, 1610, 1847, 2024
PfoI	TCCNGGA	1 cut(s)	1107
PmeI	GTTTAAAC	1 cut(s)	1531
Ppu21I	YACGTR	2 cut(s)	1572, 1677
PscI	ACATGT	1 cut(s)	1069
PshBI	ATTAAT	2 cut(s)	642, 852
Psp6I	CCWGG	3 cut(s)	348, 993, 1348
PspGI	CCWGG	3 cut(s)	348, 993, 1348
PspN4I	GGNNCC	4 cut(s)	927, 992, 1295, 1662
PspOMI	GGGCCC	1 cut(s)	990
PspPI	GGNCC	3 cut(s)	990, 991, 1339
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	1345
RsaI	GTAC	7 cut(s)	418, 726, 732, 1239, 1364, 1574, 1679
RsaNI	GTAC	7 cut(s)	417, 725, 731, 1238, 1363, 1573, 1678
RseI	CAYNNNNRTG	3 cut(s)	317, 1068, 1455
SacII	CCGCGG	1 cut(s)	783
SaqAI	TTAA	9 cut(s)	309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
Sau3AI	GATC	5 cut(s)	1345, 1374, 1584, 2017, 2072
Sau96I	GGNCC	3 cut(s)	990, 991, 1339
ScaI	AGTACT	1 cut(s)	418
ScrFI	CCNGG	4 cut(s)	350, 995, 1109, 1350
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	9 cut(s)	172, 1132, 1212, 1237, 1399, 1501, 1541, 1632, 2146
SfcI	CTRYAG	6 cut(s)	143, 412, 741, 792, 899, 985
Sfr303I	CCGCGG	1 cut(s)	783
SgrBI	CCGCGG	1 cut(s)	783
SmiMI	CAYNNNNRTG	3 cut(s)	317, 1068, 1455
SmlI	CTYRAG	2 cut(s)	1298, 1851
SmoI	CTYRAG	2 cut(s)	1298, 1851
SnaBI	TACGTA	1 cut(s)	1572
SphI	GCATGC	2 cut(s)	297, 908
SsiI	CCGC	7 cut(s)	125, 212, 780, 782, 887, 1600, 2039
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	753, 1343, 1520, 2021
StyD4I	CCNGG	4 cut(s)	348, 993, 1107, 1348
StyI	CCWWGG	1 cut(s)	2167
TaiI	ACGT	2 cut(s)	1574, 1679
TaqI	TCGA	4 cut(s)	202, 228, 1320, 1425
TatI	WGTACW	3 cut(s)	416, 724, 1237
TauI	GCSGC	2 cut(s)	1602, 2042
TfiI	GAWTC	7 cut(s)	199, 215, 1060, 1444, 1610, 1847, 2024
Tru1I	TTAA	9 cut(s)	309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
Tru9I	TTAA	9 cut(s)	309, 585, 642, 852, 1280, 1325, 1530, 1989, 2103
TscAI	CASTG	3 cut(s)	96, 989, 1419
TseFI	GTSAC	3 cut(s)	1025, 1672, 1777
TseI	GCWGC	8 cut(s)	60, 142, 1210, 1498, 1514, 1727, 1823, 1976
Tsp45I	GTSAC	3 cut(s)	1025, 1672, 1777
TspDTI	ATGAA	9 cut(s)	167, 375, 713, 849, 926, 1052, 1418, 1448, 1860
TspRI	CASTG	3 cut(s)	96, 989, 1419
VspI	ATTAAT	2 cut(s)	642, 852
XagI	CCTNNNNNAGG	1 cut(s)	1301
XapI	RAATTY	1 cut(s)	1391
XbaI	TCTAGA	1 cut(s)	2020
XceI	RCATGY	4 cut(s)	297, 398, 908, 1073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	1257
XspI	CTAG	4 cut(s)	753, 1343, 1520, 2021
ZrmI	AGTACT	1 cut(s)	418
Zsp2I	ATGCAT	2 cut(s)	1099, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.