Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002144.1

Orthogroup ID

OG0014875

Physical Location & Seq

Genomic Coordinates Forward (+)

22334 .. 24903

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002144.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcgacgacacatggataaatcacttcgtttggagtacatgtcgatcagagatgcaagagaattatgggtagcgctagaagagcgttttggcaatgtccaagattccctcctccctgatttgaaggtccaatggagcagtctgagtgttgcggactttaaaaatgttgttgaatataatttagaagctcttcgcctcaaatccatgttgaggttttttggacagcctgtcacagagcaagagctaattgagaaaactctctccaccttccctgtctcaacaatcttgacactgggcggccttggtgagacaatcgccgctctcgccgatgaagatgttgaggacgagcttctggaccttgatttccttcatggtgttctccgacgcctgcaattagagctttacagaagaaacagattgttagattgcgtcgttcttcctcctccggccaccttttgcttccattccaaagggaatcctgctcttctcagtcccctctacacgtccgtggtggtgattcgttgtggaaagcaccgtggacggccctacaaggccgggaagtttggcggcggtgatgctttgaacccagatcggaactttcgattccggctatttcttgagggcttttggggcttggaggacgtaaatgcttttcccaaagtggcttggagcgatttcacttgtggaggacgaatcgaaactttgaaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

237

Amino Acids

27.08

Weight (kDa)

6.45

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014875)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8173640.1_g000001 Rmu_sc0001016.1_g000012 Rmu_sc0002144.1_g000008 Rmu_sc0002235.1_g000044 Rmu_sc0002862.1_g000010 Rmu_sc0002889.1_g000019 Rmu_sc0003262.1_g000001 Rmu_sc0003942.1_g000014 Rmu_sc0004655.1_g000004 Rmu_sc0006112.1_g000007 Rmu_sc0008581.1_g000015 Rmu_sc0010065.1_g000010 Rmu_sc0013785.1_g000002 Rmu_sc0013899.1_g000001 Rmu_sc0038230.1_g000001 Rmu_ssc0000065.1_g000008 Rmu_ssc0000420.1_g000039

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_co8173640.1_g000001 Rmu_sc0001016.1_g000012 Rmu_sc0002144.1_g000008 Rmu_sc0002235.1_g000044 Rmu_sc0002862.1_g000010 Rmu_sc0002889.1_g000019 Rmu_sc0003262.1_g000001 Rmu_sc0003942.1_g000014 Rmu_sc0004655.1_g000004 Rmu_sc0006112.1_g000007 Rmu_sc0008581.1_g000015 Rmu_sc0010065.1_g000010 Rmu_sc0013785.1_g000002 Rmu_sc0013899.1_g000001 Rmu_sc0038230.1_g000001 Rmu_ssc0000065.1_g000008 Rmu_ssc0000420.1_g000039

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	320
AciI	CCGC	5 cut(s)	152, 297, 318, 567, 570
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	38
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	2 cut(s)	39, 501
AgsI	TTSAA	4 cut(s)	124, 173, 583, 706
AhdI	GACNNNNNGTC	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	504
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	188, 244, 349, 400
AluI	AGCT	4 cut(s)	188, 244, 349, 400
Alw26I	GTCTC	2 cut(s)	280, 302
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	4 cut(s)	298, 447, 542, 552
ApoI	RAATTY	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	3 cut(s)	127, 355, 543
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	3 cut(s)	317, 526, 584
AvaII	GGWCC	2 cut(s)	127, 355
BceAI	ACGGC	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	280, 302
BfaI	CTAG	2 cut(s)	77, 712
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	3 cut(s)	298, 318, 568
BlsI	GCNGC	3 cut(s)	299, 319, 569
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	127, 355
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	127, 355, 543
BmrFI	CCNGG	1 cut(s)	556
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	43, 565
BmuI	ACTGGG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	301, 507, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	301, 507, 535
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	134, 502
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	2 cut(s)	101, 432
BshFI	GGCC	4 cut(s)	300, 449, 544, 554
BsiSI	CCGG	3 cut(s)	446, 555, 607
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	280, 302
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	4 cut(s)	300, 449, 544, 554
Bsp143I	GATC	2 cut(s)	45, 589
BspACI	CCGC	5 cut(s)	152, 297, 318, 567, 570
BspANI	GGCC	4 cut(s)	300, 449, 544, 554
BspCNI	CTCAG	2 cut(s)	135, 501
BspQI	GCTCTTC	3 cut(s)	75, 195, 489
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	301, 507, 535
BssMI	GATC	2 cut(s)	45, 589
BssNI	GRCGYC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	3 cut(s)	75, 195, 489
BstACI	GRCGYC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	143, 488
BstDSI	CCRYGG	2 cut(s)	507, 535
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	48, 592
BstMAI	GTCTC	2 cut(s)	280, 302
BstMBI	GATC	2 cut(s)	45, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 323, 397, 630
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	554
BsuRI	GGCC	4 cut(s)	300, 449, 544, 554
BtgI	CCRYGG	2 cut(s)	507, 535
BtrI	CACGTC	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	127, 355, 543
CseI	GACGC	2 cut(s)	393, 418
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	13, 40, 205, 371
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	143, 488
DpnI	GATC	2 cut(s)	47, 591
DpnII	GATC	2 cut(s)	45, 589
DraI	TTTAAA	1 cut(s)	160
DriI	GACNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	75, 195, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	3 cut(s)	75, 195, 489
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	127, 355
Eco47III	AGCGCT	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	4 cut(s)	16, 43, 208, 374
FaiI	YATR	6 cut(s)	14, 41, 67, 177, 206, 372
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	4 cut(s)	12, 39, 204, 370
Fnu4HI	GCNGC	3 cut(s)	298, 318, 568
Fsp4HI	GCNGC	3 cut(s)	298, 318, 568
FspBI	CTAG	2 cut(s)	77, 712
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	298, 318, 568
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	300, 449, 544, 554
HapII	CCGG	3 cut(s)	446, 555, 607
HgaI	GACGC	2 cut(s)	393, 418
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	16, 43, 208, 374
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	5 cut(s)	104, 475, 517, 603, 693
HpaII	CCGG	3 cut(s)	446, 555, 607
HphI	GGTGA	3 cut(s)	317, 526, 584
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	50, 144, 383, 594
Hpy188III	TCNNGA	3 cut(s)	286, 353, 617
Hpy8I	GTNNAC	1 cut(s)	539
Hpy99I	CGWCG	3 cut(s)	9, 387, 434
HpyAV	CCTTC	3 cut(s)	118, 277, 377
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	2 cut(s)	503, 642
HpyCH4V	TGCA	2 cut(s)	56, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 323, 397, 630
HpyF3I	CTNAG	2 cut(s)	143, 488
HpySE526I	ACGT	2 cut(s)	503, 642
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	4 cut(s)	16, 43, 208, 374
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	45, 589
LguI	GCTCTTC	3 cut(s)	75, 195, 489
LmnI	GCTCC	2 cut(s)	135, 669
LweI	GCATC	2 cut(s)	43, 565
MaeI	CTAG	2 cut(s)	77, 712
MaeII	ACGT	2 cut(s)	503, 642
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	47, 591
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	2 cut(s)	45, 589
MboII	GAAGA	6 cut(s)	92, 182, 344, 420, 428, 476
MluCI	AATT	5 cut(s)	62, 178, 246, 392, 707
MmeI	TCCRAC	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	3 cut(s)	446, 555, 607
MspR9I	CCNGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	4 cut(s)	82, 323, 397, 630
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	2 cut(s)	45, 589
NlaIII	CATG	4 cut(s)	16, 43, 208, 374
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	506
PciI	ACATGT	1 cut(s)	39
PciSI	GCTCTTC	3 cut(s)	75, 195, 489
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	104, 475, 517, 603, 693
PkrI	GCNGC	3 cut(s)	299, 319, 569
PscI	ACATGT	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	127, 355, 543
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	506
SapI	GCTCTTC	3 cut(s)	75, 195, 489
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	298, 318, 568
Sau3AI	GATC	2 cut(s)	45, 589
Sau96I	GGNCC	3 cut(s)	127, 355, 543
ScrFI	CCNGG	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	43, 565
SinI	GGWCC	2 cut(s)	127, 355
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	62, 178, 246, 392, 707
SsiI	CCGC	5 cut(s)	152, 297, 318, 567, 570
SspMI	CTAG	2 cut(s)	77, 712
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	2 cut(s)	506, 645
TaqI	TCGA	3 cut(s)	44, 601, 696
TasI	AATT	5 cut(s)	62, 178, 246, 392, 707
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	3 cut(s)	300, 320, 570
TfiI	GAWTC	5 cut(s)	104, 475, 517, 603, 693
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	345, 359
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	127, 355
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	2 cut(s)	77, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.