Rmu_sc0038230.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038230.1
OG0014875
Physical Location & Seq
Forward (+)
164 .. 529
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038230.1_g000001.1.cds

Sequence Viewer

Length: 366 bp
atgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagggagctatgggtagcgctagaagaacgctttggcaatgtccaagatttcctcctccctcacttgaaggttcaatggaacaatctgtgctttgctgatttcaagtctgttgctaaatataattcagaagctcttcgcctacagtccatgttgaggttttgtggacaacatgtcacagagcaaagcgaattgagaaaactctctccaccttccccgtttcagccattgtggtatcaaagcaataccgcactgaagttaatgctagaaggatcacgaggtttcaacagcttatcaatctcatatctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

121

Amino Acids

14.24

Weight (kDa)

9.26

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 7
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 124, 131, 160, 340
AhdI GACNNNNNGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 64, 188, 345
AluI AGCT 3 cut(s) 64, 188, 345
AlwI GGATC 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 76
BauI CACGAG 1 cut(s) 330
BfaI CTAG 2 cut(s) 77, 320
BfmI CTRYAG 2 cut(s) 197, 362
BfoI RGCGCY 1 cut(s) 77
BmeRI GACNNNNNGTC 1 cut(s) 227
BmsI GCATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 210
Bsp143I GATC 2 cut(s) 45, 326
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 2 cut(s) 45, 326
BssNI GRCGYC 1 cut(s) 7
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 48, 329
BstMBI GATC 2 cut(s) 45, 326
BstNSI RCATGY 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 197, 362
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 15
CviAII CATG 2 cut(s) 205, 227
CviJI RGCY 4 cut(s) 64, 188, 280, 345
CviKI_1 RGCY 4 cut(s) 64, 188, 280, 345
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 47, 328
DpnII GATC 2 cut(s) 45, 326
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 329
FaeI CATG 2 cut(s) 208, 230
FaiI YATR 9 cut(s) 12, 14, 39, 41, 67, 177, 206, 228, 358
FatI CATG 2 cut(s) 204, 226
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 77, 320
GlaI GCGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 77
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 2 cut(s) 208, 230
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 118, 276, 317
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 2 cut(s) 208, 230
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 45, 326
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 61
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 77, 320
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 47, 328
MboI GATC 2 cut(s) 45, 326
MboII GAAGA 2 cut(s) 92, 182
MluCI AATT 2 cut(s) 178, 245
MnlI CCTC 5 cut(s) 119, 122, 126, 204, 326
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 314
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 45, 326
NlaIII CATG 2 cut(s) 208, 230
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 230
PciI ACATGT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 2 cut(s) 45, 326
SetI ASST 7 cut(s) 66, 129, 190, 215, 268, 337, 347
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 197, 362
Sse9I AATT 2 cut(s) 178, 245
SsiI CCGC 1 cut(s) 303
SspMI CTAG 2 cut(s) 77, 320
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 178, 245
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 312
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 77, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.