Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006112.1

Orthogroup ID

OG0014875

Physical Location & Seq

Genomic Coordinates Reverse (-)

39929 .. 40408

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006112.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgcttgactcaacaggctcagattaccacagttgggtaaccgatgttgagaaccacctcacttcaaagagaatattacccataatccaggcacctaacccggatcgtgtgctcgtacgaacacctacaaagcatgctcaagcagttatcttgatgcgacgccatatggacaagccactcagattggagtatatgtctatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaagttcaatggaacaatctgcgctttgttgatttcaagtatgttgttgaatataattcagaagctcttcgcctacagtccatgttgaggttttgtggacaacctgtcacagagcaagagttaattgagaaaactctctccaccttccccttttcagccattgtggtatcaaagcaataccgcactaaagtcaatgctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

159

Amino Acids

18.52

Weight (kDa)

8.71

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014875)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8173640.1_g000001 Rmu_sc0001016.1_g000012 Rmu_sc0002144.1_g000008 Rmu_sc0002235.1_g000044 Rmu_sc0002862.1_g000010 Rmu_sc0002889.1_g000019 Rmu_sc0003262.1_g000001 Rmu_sc0003942.1_g000014 Rmu_sc0004655.1_g000004 Rmu_sc0006112.1_g000007 Rmu_sc0008581.1_g000015 Rmu_sc0010065.1_g000010 Rmu_sc0013785.1_g000002 Rmu_sc0013899.1_g000001 Rmu_sc0038230.1_g000001 Rmu_ssc0000065.1_g000008 Rmu_ssc0000420.1_g000039

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_co8173640.1_g000001 Rmu_sc0001016.1_g000012 Rmu_sc0002144.1_g000008 Rmu_sc0002235.1_g000044 Rmu_sc0002862.1_g000010 Rmu_sc0002889.1_g000019 Rmu_sc0003262.1_g000001 Rmu_sc0003942.1_g000014 Rmu_sc0004655.1_g000004 Rmu_sc0006112.1_g000007 Rmu_sc0008581.1_g000015 Rmu_sc0010065.1_g000010 Rmu_sc0013785.1_g000002 Rmu_sc0013899.1_g000001 Rmu_sc0038230.1_g000001 Rmu_ssc0000065.1_g000008 Rmu_ssc0000420.1_g000039

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	2 cut(s)	228, 239
AfiI	CCNNNNNNNGG	2 cut(s)	34, 363
AgsI	TTSAA	5 cut(s)	66, 277, 284, 313, 326
AhdI	GACNNNNNGTC	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	217, 341
AluI	AGCT	2 cut(s)	217, 341
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	111
Aor51HI	AGCGCT	2 cut(s)	228, 239
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	3 cut(s)	229, 240, 300
AsuC2I	CCSGG	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	2 cut(s)	230, 241
Bme1390I	CCNGG	2 cut(s)	89, 101
BmeRI	GACNNNNNGTC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	89, 101
BmsI	GCATC	2 cut(s)	144, 196
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 363
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	34, 363
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	33, 193
BseRI	GAGGAG	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	101
BsiWI	CGTACG	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	34, 363
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	32, 192
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	111
BspQI	GCTCTTC	2 cut(s)	228, 348
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	32, 354
Bst6I	CTCTTC	2 cut(s)	228, 348
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	19, 179
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	2 cut(s)	230, 241
BstHHI	GCGC	3 cut(s)	229, 240, 300
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	87, 99
BstSFI	CTRYAG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	3 cut(s)	229, 240, 300
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	2 cut(s)	134, 358
CviJI	RGCY	5 cut(s)	18, 175, 217, 341, 434
CviKI_1	RGCY	5 cut(s)	18, 175, 217, 341, 434
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	19, 179
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DriI	GACNNNNNGTC	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	228, 348
Eam1105I	GACNNNNNGTC	1 cut(s)	380
EarI	CTCTTC	2 cut(s)	228, 348
Eco47III	AGCGCT	2 cut(s)	228, 239
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	137, 361
FatI	CATG	2 cut(s)	133, 357
FauNDI	CATATG	1 cut(s)	165
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	3 cut(s)	228, 239, 299
HaeII	RGCGCY	2 cut(s)	230, 241
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	3 cut(s)	229, 240, 300
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	137, 361
Hin6I	GCGC	3 cut(s)	227, 238, 298
HinP1I	GCGC	3 cut(s)	227, 238, 298
HinfI	GANTC	2 cut(s)	8, 257
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	22, 182, 337
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	32, 354
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	19, 179
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	137, 361
HspAI	GCGC	3 cut(s)	227, 238, 298
Kzo9I	GATC	1 cut(s)	103
LguI	GCTCTTC	2 cut(s)	228, 348
LpnPI	CCDG	6 cut(s)	74, 101, 114, 282, 393, 459
LweI	GCATC	2 cut(s)	144, 196
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	37, 382
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	245, 335
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	331, 399
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	4 cut(s)	68, 272, 275, 357
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	89, 101
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	137, 361
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PciSI	GCTCTTC	2 cut(s)	228, 348
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	257
Pfl23II	CGTACG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	87
PspLI	CGTACG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SapI	GCTCTTC	2 cut(s)	228, 348
SaqAI	TTAA	1 cut(s)	398
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	2 cut(s)	89, 101
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	60, 97, 127, 219, 343, 368, 382, 422
SfaNI	GCATC	2 cut(s)	144, 196
SfcI	CTRYAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	331, 399
SsiI	CCGC	1 cut(s)	457
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	87, 99
TaaI	ACNGT	2 cut(s)	32, 354
TasI	AATT	2 cut(s)	331, 399
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.