Rmu_sc0002235.1_g000044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002235.1
OG0014875
Physical Location & Seq
Reverse (-)
151533 .. 151769
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002235.1_g000044.1.cds

Sequence Viewer

Length: 237 bp
atgcgacgccatatggacaaggcactcagattggagtatatgttgatcaaggatgcaagagagctatgggcagcgctagaagagcactttggcaatgtccaagattccctcctccctgacatgaaggttcaatggaacaatctgcgttttgctgatttcaagtctgttgctgaatataattcagaagctcttcacctacagtcaatgttgaggttttgtggacaacctgtcatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

78

Amino Acids

9.27

Weight (kDa)

6.26

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 7
AfeI AGCGCT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 131, 160
AhdI GACNNNNNGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 64, 188
AluI AGCT 2 cut(s) 64, 188
Alw21I GWGCWC 1 cut(s) 87
Aor51HI AGCGCT 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 83
BclI TGATCA 1 cut(s) 45
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeRI GACNNNNNGTC 1 cut(s) 227
BmsI GCATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 39
BspQI GCTCTTC 2 cut(s) 75, 195
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 58
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 15
CviAII CATG 1 cut(s) 121
CviJI RGCY 2 cut(s) 64, 188
CviKI_1 RGCY 2 cut(s) 64, 188
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 75, 195
Eco47III AGCGCT 1 cut(s) 75
FaeI CATG 1 cut(s) 124
FaiI YATR 9 cut(s) 12, 14, 39, 41, 67, 122, 177, 233, 235
FatI CATG 1 cut(s) 120
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 77
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 92, 182
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 178
MnlI CCTC 3 cut(s) 119, 122, 204
MroXI GAANNNNTTC 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 124
PciSI GCTCTTC 2 cut(s) 75, 195
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 73
SapI GCTCTTC 2 cut(s) 75, 195
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 87
SetI ASST 6 cut(s) 66, 129, 190, 198, 215, 229
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 197
SgeI CNNG 8 cut(s) 31, 61, 69, 89, 113, 128, 133, 172
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 201
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.