Rmu_ssc0000420.1_g000039

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000420.1
Physical Location & Seq
Reverse (-)
169326 .. 169565
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000420.1_g000039.1.cds

Sequence Viewer

Length: 240 bp
atgcgacgtcatatggacaaagcactcagattggagtatatgtcgatcaaagatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaacattccctcctccctgacttgaaggttcaatggaacaatctgctctttgccgacttcaagtttgtcgctgaatataattccgaacctcttcgcgtacaatccatgttgagattttgtggacaacctatcacagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.47

Weight (kDa)

6.73

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 10
AccII CGCG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 198
AfeI AGCGCT 2 cut(s) 75, 86
AgsI TTSAA 3 cut(s) 124, 131, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Aor51HI AGCGCT 2 cut(s) 75, 86
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 76, 87
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 2 cut(s) 77, 88
BmsI GCATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 93, 123
Bse3DI GCAATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 195
Bsp143I GATC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 7
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 2 cut(s) 77, 88
BstHHI GCGC 2 cut(s) 76, 87
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstUI CGCG 1 cut(s) 195
CfoI GCGC 2 cut(s) 76, 87
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 205
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 75, 195
EarI CTCTTC 2 cut(s) 75, 195
Eco47III AGCGCT 2 cut(s) 75, 86
FaeI CATG 1 cut(s) 208
FaiI YATR 7 cut(s) 12, 14, 39, 41, 67, 177, 206
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 12
FspBI CTAG 1 cut(s) 77
GlaI GCGC 2 cut(s) 75, 86
HaeII RGCGCY 2 cut(s) 77, 88
HhaI GCGC 2 cut(s) 76, 87
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 2 cut(s) 74, 85
HinP1I GCGC 2 cut(s) 74, 85
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 2 cut(s) 74, 85
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 75
LpnPI CCDG 1 cut(s) 129
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 7
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 92, 182
MluCI AATT 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 119, 122, 198
MroXI GAANNNNTTC 1 cut(s) 189
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 189
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 45
SetI ASST 5 cut(s) 10, 66, 129, 190, 229
SfaNI GCATC 1 cut(s) 43
SgeI CNNG 7 cut(s) 69, 89, 128, 133, 172, 206, 217
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 77
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 77
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.