Rmu_sc0002169.1_g000037

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002169.1
OG0012143
Physical Location & Seq
Reverse (-)
196716 .. 198083
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002169.1_g000037.1.cds

Sequence Viewer

Length: 1368 bp
atgggatggctccagatcttattgggagggcttgttataattgtcagcatatccagcctcttcaagttctactctgctggatttttcttgcgcaatgaagacatatgccgacatgtttatggggtcagagatgaatatgggggcttcgacataaaagctctgtctgatcgagtgggggaagtgctaaacaaattggatagtttacaagaaaagcttgagtcagctgtgcagcaaatggagaagaacaaagatgtcttgcatacaactaatatcacaaaactggagttcaagaagtatctggaggagcaagtaatcaggcctctttatagtgctcacatttctctgagactgattcggttacctaacccagaaggtattagaaactcaacaatgaaagaggaacctttgattaatacttttgtgattgaagagataaggaagtatataaccccaaaggagagtagaattgggaagattaatatatatggtacagagaggatatacaatacgattggacatgcttgtgtgttgtacaagaaagagttggaagagtacatgaactatgacatcgggtcttattgtaacgatgattggaacttggctcagaagctgatgtttaatggttgtgatcctttgccgcggaggcgatgtttgacaagggcctcaaaggtctatcagaagccttatccgatcaatgagtctctgtggaaattgccggatgacagaaatgtgcggtggagcaattatcagtgcaggaactttcagtgcttgatgagcaataattccaagaggggctattcaaagtgcgtaggatgttttgaaatggagaaggaaaagcttaaatggatgattaccaataaattgctaccagttgatttcctgatcagtgaaattttggctattaagcctggggagataagaattggtcttgactttggtgttggcacaggaacttatgctgcaagaatgagagaaaataatgttacggtagtctctactgctcttaaccttggggctcctttcaatgaaatgattgcattaagaggtttggttccgctttatgtaacattgaatcagcgtctacctttctttgataatataatggacttgattcataccgctgggtttctggatggctggattgacctgcagttgctggatttcatcctgtttgattgggaccgaattctgaggcctggcggattgttatggattgaccggttcttctgcaataaaaaggatttggatgatttcatgtatatgtttctgcagttgagatacaagaaacacaagtgggttatttctcccaaatcaaaggatgaggtctacttttctgcagtgttagagaaacctccaagagcaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

455

Amino Acids

53.13

Weight (kDa)

8.79

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05390
fragaria_vesca FvH4_6g06250 FvH4_6g06250
malus_domestica MD12G1217000.v1.1
prunus_persica Prupe.6G323300_v2.0.a1
pyrus_communis pycom04g17960
rosa_chinensis RchiOBHm_Chr3g0455271
rosa_laevigata RLG00000025373
rosa_multiflora Rmu_sc0002169.1_g000037
rosa_roxburghii Rroxscaffold_6G00424410
rosa_rugosa Rorug03G0005500 Rorug03G0005600 Rorug03G0005700 Rorug03G0005800
rosa_samantha Rh3AG065600 Rh3BG067800 Rh3CG066200 Rh3DG067800
rosa_wichuraiana Rw3G005170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
Acc16I TGCGCA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 1155
AccI GTMKAC 2 cut(s) 1081, 1326
AccII CGCG 1 cut(s) 640
AciI CCGC 6 cut(s) 638, 640, 733, 1055, 1119, 1200
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 2 cut(s) 891, 1185
AfaI GTAC 3 cut(s) 490, 533, 554
AflIII ACRYGT 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 1218
AgsI TTSAA 7 cut(s) 64, 289, 428, 801, 821, 1024, 1072
AhdI GACNNNNNGTC 1 cut(s) 571
AjnI CCWGG 2 cut(s) 907, 1195
AluBI AGCT 5 cut(s) 158, 214, 224, 610, 838
AluI AGCT 5 cut(s) 158, 214, 224, 610, 838
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 340, 705, 997
AlwI GGATC 1 cut(s) 623
AlwNI CAGNNNCTG 2 cut(s) 610, 1156
AoxI GGCC 3 cut(s) 317, 660, 1193
ApeKI GCWGC 2 cut(s) 229, 959
ApoI RAATTY 2 cut(s) 891, 1185
AseI ATTAAT 2 cut(s) 411, 477
AsiGI ACCGGT 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 660, 1180
AvaII GGWCC 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 1018
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 241, 946
BccI CCATC 1 cut(s) 1127
BciT130I CCWGG 2 cut(s) 909, 1197
BclI TGATCA 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 340, 705, 997
BfmI CTRYAG 3 cut(s) 1148, 1268, 1335
BfuAI ACCTGC 1 cut(s) 1155
BglI GCCNNNNNGGC 1 cut(s) 643
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 230, 638, 960
BlsI GCNGC 3 cut(s) 231, 639, 961
Bme1390I CCNGG 2 cut(s) 909, 1197
Bme18I GGWCC 1 cut(s) 1180
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 2 cut(s) 660, 1180
BmiI GGNNCC 5 cut(s) 11, 402, 1017, 1053, 1181
BmrFI CCNGG 2 cut(s) 909, 1197
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 302, 320
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 638, 908, 1009
BsaWI WCCGGW 1 cut(s) 1218
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 634, 664
Bse118I RCCGGY 1 cut(s) 1218
Bse1I ACTGG 2 cut(s) 285, 869
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 909, 1197
BseDI CCNNGG 3 cut(s) 638, 908, 1009
BseGI GGATG 8 cut(s) 11, 724, 818, 852, 1138, 1164, 1252, 1324
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 335, 617, 1181
BseNI ACTGG 2 cut(s) 285, 869
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 241, 946
BseYI CCCAGC 1 cut(s) 1121
BsgI GTGCAG 2 cut(s) 248, 772
Bsh1236I CGCG 1 cut(s) 640
BshFI GGCC 3 cut(s) 319, 662, 1195
BshTI ACCGGT 1 cut(s) 1218
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 716, 1219
BslFI GGGAC 1 cut(s) 1193
BsmAI GTCTC 3 cut(s) 340, 705, 997
BsmFI GGGAC 1 cut(s) 1193
BsnI GGCC 3 cut(s) 319, 662, 1195
Bsp1286I GDGCHC 2 cut(s) 334, 1018
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 5 cut(s) 15, 166, 628, 690, 882
BspACI CCGC 6 cut(s) 638, 640, 733, 1055, 1119, 1200
BspANI GGCC 3 cut(s) 319, 662, 1195
BspCNI CTCAG 3 cut(s) 336, 616, 1182
BspFNI CGCG 1 cut(s) 640
BspLI GGNNCC 5 cut(s) 11, 402, 1017, 1053, 1181
BspMAI CTGCAG 3 cut(s) 1152, 1272, 1339
BspMI ACCTGC 1 cut(s) 1155
BspPI GGATC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 1218
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 2 cut(s) 285, 869
BssAI RCCGGY 1 cut(s) 1218
BssECI CCNNGG 3 cut(s) 638, 908, 1009
BssMI GATC 5 cut(s) 15, 166, 628, 690, 882
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 2 cut(s) 909, 1197
Bst4CI ACNGT 1 cut(s) 988
Bst6I CTCTTC 3 cut(s) 65, 423, 543
BstAUI TGTACA 1 cut(s) 531
BstDEI CTNAG 3 cut(s) 344, 603, 1190
BstDSI CCRYGG 1 cut(s) 638
BstEII GGTNACC 1 cut(s) 357
BstF5I GGATG 8 cut(s) 11, 724, 818, 852, 1138, 1164, 1252, 1324
BstFNI CGCG 1 cut(s) 640
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 5 cut(s) 18, 169, 631, 693, 885
BstMAI GTCTC 3 cut(s) 340, 705, 997
BstMBI GATC 5 cut(s) 15, 166, 628, 690, 882
BstMWI GCNNNNNNNGC 3 cut(s) 54, 643, 774
BstNI CCWGG 2 cut(s) 909, 1197
BstNSI RCATGY 2 cut(s) 116, 521
BstPI GGTNACC 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 907, 1195
BstSFI CTRYAG 3 cut(s) 1148, 1268, 1335
BstUI CGCG 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 241, 946
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 3 cut(s) 319, 662, 1195
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 661
BtsCI GGATG 8 cut(s) 11, 724, 818, 852, 1138, 1164, 1252, 1324
BtsI GCAGTG 1 cut(s) 1344
BtsIMutI CAGTG 4 cut(s) 755, 770, 892, 1344
BveI ACCTGC 1 cut(s) 1155
CaiI CAGNNNCTG 2 cut(s) 610, 1156
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 1218
Cfr13I GGNCC 2 cut(s) 660, 1180
Cfr42I CCGCGG 1 cut(s) 641
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 3 cut(s) 489, 532, 553
CspAI ACCGGT 1 cut(s) 1218
CviAII CATG 4 cut(s) 113, 518, 556, 1255
CviQI GTAC 3 cut(s) 489, 532, 553
DdeI CTNAG 3 cut(s) 344, 603, 1190
DpnI GATC 5 cut(s) 17, 168, 630, 692, 884
DpnII GATC 5 cut(s) 15, 166, 628, 690, 882
DriI GACNNNNNGTC 1 cut(s) 571
Eam1104I CTCTTC 3 cut(s) 65, 423, 543
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 3 cut(s) 65, 423, 543
EciI GGCGGA 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 1009
Eco147I AGGCCT 2 cut(s) 319, 1195
Eco24I GRGCYC 1 cut(s) 1018
Eco47I GGWCC 1 cut(s) 1180
Eco91I GGTNACC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 1185
EcoRII CCWGG 2 cut(s) 907, 1195
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 1018
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 4 cut(s) 116, 521, 559, 1258
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 1193
FatI CATG 4 cut(s) 112, 517, 555, 1254
FauNDI CATATG 1 cut(s) 104
FbaI TGATCA 1 cut(s) 882
FblI GTMKAC 2 cut(s) 1081, 1326
Fnu4HI GCNGC 3 cut(s) 230, 638, 960
FokI GGATG 8 cut(s) 18, 731, 825, 859, 1145, 1151, 1259, 1331
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 3 cut(s) 230, 638, 960
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 230, 638, 960
GsaI CCCAGC 1 cut(s) 1125
GsuI CTGGAG 2 cut(s) 302, 320
HaeIII GGCC 3 cut(s) 319, 662, 1195
HapII CCGG 2 cut(s) 716, 1219
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 116, 521, 559, 1258
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HindIII AAGCTT 2 cut(s) 212, 836
HinfI GANTC 5 cut(s) 218, 352, 698, 1072, 1111
HpaII CCGG 2 cut(s) 716, 1219
Hpy166II GTNNAC 3 cut(s) 203, 1082, 1327
Hpy188I TCNGA 8 cut(s) 128, 166, 345, 606, 678, 690, 1191, 1367
Hpy188III TCNNGA 6 cut(s) 13, 289, 299, 880, 929, 1130
Hpy8I GTNNAC 3 cut(s) 203, 1082, 1327
HpyAV CCTTC 2 cut(s) 365, 823
HpyCH4III ACNGT 1 cut(s) 988
HpyCH4V TGCA 9 cut(s) 229, 259, 753, 962, 1037, 1150, 1230, 1270, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 643, 774
HpyF3I CTNAG 3 cut(s) 344, 603, 1190
Hsp92II CATG 4 cut(s) 116, 521, 559, 1258
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 882
KspI CCGCGG 1 cut(s) 641
Kzo9I GATC 5 cut(s) 15, 166, 628, 690, 882
LmnI GCTCC 4 cut(s) 15, 304, 738, 1021
Lsp1109I GCAGC 2 cut(s) 241, 946
MaeIII GTNAC 4 cut(s) 357, 581, 982, 1063
MalI GATC 5 cut(s) 17, 168, 630, 692, 884
MboI GATC 5 cut(s) 15, 166, 628, 690, 882
MboII GAAGA 7 cut(s) 52, 110, 253, 440, 484, 560, 1216
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 334, 1018
MlyI GAGTC 2 cut(s) 227, 707
MmeI TCCRAC 1 cut(s) 525
MseI TTAA 7 cut(s) 411, 477, 618, 840, 903, 1005, 1040
MslI CAYNNNNRTG 3 cut(s) 117, 522, 1259
MspA1I CMGCKG 3 cut(s) 224, 640, 1121
MspI CCGG 2 cut(s) 716, 1219
MspR9I CCNGG 2 cut(s) 909, 1197
MvaI CCWGG 2 cut(s) 909, 1197
MvnI CGCG 1 cut(s) 640
MwoI GCNNNNNNNGC 3 cut(s) 54, 643, 774
NdeI CATATG 1 cut(s) 104
NdeII GATC 5 cut(s) 15, 166, 628, 690, 882
NlaIII CATG 4 cut(s) 116, 521, 559, 1258
NlaIV GGNNCC 5 cut(s) 11, 402, 1017, 1053, 1181
NsbI TGCGCA 1 cut(s) 92
NspI RCATGY 2 cut(s) 116, 521
PceI AGGCCT 2 cut(s) 319, 1195
PciI ACATGT 1 cut(s) 112
PfeI GAWTC 3 cut(s) 352, 1072, 1111
PinAI ACCGGT 1 cut(s) 1218
PkrI GCNGC 3 cut(s) 231, 639, 961
PleI GAGTC 2 cut(s) 226, 706
PpsI GAGTC 2 cut(s) 226, 706
PscI ACATGT 1 cut(s) 112
PshBI ATTAAT 2 cut(s) 411, 477
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 907, 1195
PspEI GGTNACC 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 1121
PspGI CCWGG 2 cut(s) 907, 1195
PspN4I GGNNCC 5 cut(s) 11, 402, 1017, 1053, 1181
PspPI GGNCC 2 cut(s) 660, 1180
PstI CTGCAG 3 cut(s) 1152, 1272, 1339
PstNI CAGNNNCTG 2 cut(s) 610, 1156
PsuI RGATCY 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 490, 533, 554
RsaNI GTAC 3 cut(s) 489, 532, 553
RseI CAYNNNNRTG 3 cut(s) 117, 522, 1259
SacII CCGCGG 1 cut(s) 641
SaqAI TTAA 7 cut(s) 411, 477, 618, 840, 903, 1005, 1040
SatI GCNGC 3 cut(s) 230, 638, 960
Sau3AI GATC 5 cut(s) 15, 166, 628, 690, 882
Sau96I GGNCC 2 cut(s) 660, 1180
SchI GAGTC 2 cut(s) 227, 707
ScrFI CCNGG 2 cut(s) 909, 1197
SduI GDGCHC 2 cut(s) 334, 1018
SfcI CTRYAG 3 cut(s) 1148, 1268, 1335
Sfr303I CCGCGG 1 cut(s) 641
SgrBI CCGCGG 1 cut(s) 641
SinI GGWCC 1 cut(s) 1180
SmiMI CAYNNNNRTG 3 cut(s) 117, 522, 1259
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SseBI AGGCCT 2 cut(s) 319, 1195
SsiI CCGC 6 cut(s) 638, 640, 733, 1055, 1119, 1200
StuI AGGCCT 2 cut(s) 319, 1195
StyD4I CCNGG 2 cut(s) 907, 1195
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 1 cut(s) 988
TaqI TCGA 2 cut(s) 147, 169
TaqII GACCGA 1 cut(s) 1197
TatI WGTACW 2 cut(s) 531, 552
TauI GCSGC 1 cut(s) 640
TfiI GAWTC 3 cut(s) 352, 1072, 1111
Tru1I TTAA 7 cut(s) 411, 477, 618, 840, 903, 1005, 1040
Tru9I TTAA 7 cut(s) 411, 477, 618, 840, 903, 1005, 1040
TscAI CASTG 4 cut(s) 755, 770, 892, 1344
TseI GCWGC 2 cut(s) 229, 959
TspDTI ATGAA 8 cut(s) 111, 147, 407, 572, 1041, 1103, 1153, 1243
TspRI CASTG 4 cut(s) 755, 770, 892, 1344
VpaK11BI GGWCC 1 cut(s) 1180
VspI ATTAAT 2 cut(s) 411, 477
XapI RAATTY 2 cut(s) 891, 1185
XceI RCATGY 2 cut(s) 116, 521
XmiI GTMKAC 2 cut(s) 1081, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.