Rorug03G0005600

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012143
Physical Location & Seq
Forward (+)
438296 .. 441282
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0005600.1

Sequence Viewer

Length: 864 bp
ATGAGTAGTGGTCTTCTTAACACAGCTACCAGAGCCACACTCTCTTCCTTCTTCCCCAAATCTCATCTTCATCTTCATCGTCTCTTCTCTTCTTCTTCTTCAAAACCTTTCCCTTCTCTCCTTCCGGCGAGGTCATCTCCGTCTTTACGCATCTCCACCATGGCCGACGCCCCCGATGCCGGCATGGACGCCGTCCAGCGACGCCTCATGTTCGACGACGAATGTATTCTAGTGGATGAGAATGATCGTGTTGTTGGTCATGACACCAAGTACAATTGTCACTTGATGGAAAAGATTGAATCTGAAAATCTGCTTCACAGAGCTTTCAGTGTGTTTTTGTTCAACTCAAAGAACGAGTTGCTTCTTCAGCAACGTTCTGCAACAAAGGTAACATTCCCACTTGTGTGGACAAACACCTGTTGTAGCCATCCACTATACCGTGAATCTGAGCTTATCGATGAGGAGTGTCTTGGTGTAAGAAATGCTGCCCAAAGGAAGCTTTTGGATGAACTGGGTATCCCTGCTGAAGATGTGCCTGTTGATCAGTTTATTCCTTTGGGTCGCATTTTGTACAAGGCACCTTCTGACGGCAAGTGGGGAGAACATGAACTTGATTACCTGCTCTTCACTGTGCGAGATGTGAATGTGCATCCGAACCCTGATGAAGTTGCAGATATCAAATACGTAAGCCAAGAGGAGTTGAAGGAGCTGTTGAGGAAGGTGGATGCCGGGGAGGAAGGTCTGAAGCTGTCCCCTTGGTTCAGACTAGTTGTGGACAATTTCCTCTTCAAGTGGTGGGATCATGTTGAGAAACGCACCATCAAGGAAGCTGCTGACATGAAAACCATCCACAGGTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

287

Amino Acids

32.86

Weight (kDa)

5.79

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 105 - 239 2e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05390
fragaria_vesca FvH4_6g06250 FvH4_6g06250
malus_domestica MD12G1217000.v1.1
prunus_persica Prupe.6G323300_v2.0.a1
pyrus_communis pycom04g17960
rosa_chinensis RchiOBHm_Chr3g0455271
rosa_laevigata RLG00000025373
rosa_multiflora Rmu_sc0002169.1_g000037
rosa_roxburghii Rroxscaffold_6G00424410
rosa_rugosa Rorug03G0005500 Rorug03G0005600 Rorug03G0005700 Rorug03G0005800
rosa_samantha Rh3AG065600 Rh3BG067800 Rh3CG066200 Rh3DG067800
rosa_wichuraiana Rw3G005170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 577
AclI AACGTT 1 cut(s) 373
AclWI GGATC 1 cut(s) 807
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 3 cut(s) 350, 546, 764
AcyI GRCGYC 3 cut(s) 168, 189, 202
AfaI GTAC 2 cut(s) 272, 572
AfiI CCNNNNNNNGG 3 cut(s) 179, 587, 852
AgsI TTSAA 5 cut(s) 102, 299, 343, 703, 790
AhlI ACTAGT 1 cut(s) 766
AleI CACNNNNGTG 1 cut(s) 403
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 7 cut(s) 26, 323, 451, 499, 709, 748, 830
AluI AGCT 7 cut(s) 26, 323, 451, 499, 709, 748, 830
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 807
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 485, 830
Asp700I GAANNNNTTC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 730
BanI GGYRCC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 472, 817
BccI CCATC 4 cut(s) 280, 435, 827, 854
BceAI ACGGC 2 cut(s) 176, 604
BciVI GTATCC 1 cut(s) 527
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 730
BcoDI GTCTC 1 cut(s) 86
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 2 cut(s) 230, 767
BfuAI ACCTGC 1 cut(s) 627
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 2 cut(s) 486, 831
BlsI GCNGC 2 cut(s) 487, 832
Bme1390I CCNGG 1 cut(s) 730
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 730
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 4 cut(s) 159, 166, 658, 715
BmuI ACTGGG 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 5
BplI GAGNNNNNCTC 4 cut(s) 24, 56, 121, 153
BpuMI CCSGG 1 cut(s) 730
Bsa29I ATCGAT 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 685
BsaHI GRCGYC 3 cut(s) 168, 189, 202
BsaJI CCNNGG 3 cut(s) 159, 729, 755
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 587, 852
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 516
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 3 cut(s) 159, 729, 755
BseGI GGATG 6 cut(s) 241, 427, 511, 649, 730, 846
BseLI CCNNNNNNNGG 3 cut(s) 179, 587, 852
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 476, 710
BseXI GCAGC 2 cut(s) 472, 817
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 577
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 3 cut(s) 125, 180, 729
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 179, 587, 852
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 3 cut(s) 244, 541, 799
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 456
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 627
BspPI GGATC 1 cut(s) 807
BspQI GCTCTTC 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 159, 729, 755
BssMI GATC 3 cut(s) 244, 541, 799
BssNI GRCGYC 3 cut(s) 168, 189, 202
BssT1I CCWWGG 2 cut(s) 159, 755
Bst4CI ACNGT 2 cut(s) 440, 631
Bst6I CTCTTC 5 cut(s) 49, 89, 94, 629, 791
BstACI GRCGYC 3 cut(s) 168, 189, 202
BstAUI TGTACA 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 6 cut(s) 241, 427, 511, 649, 730, 846
BstKTI GATC 3 cut(s) 247, 544, 802
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 244, 541, 799
BstMWI GCNNNNNNNGC 3 cut(s) 32, 176, 367
BstSCI CCNGG 1 cut(s) 728
BstSNI TACGTA 1 cut(s) 685
BstV1I GCAGC 2 cut(s) 472, 817
BstV2I GAAGAC 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 405
Bsu15I ATCGAT 1 cut(s) 456
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 6 cut(s) 241, 427, 511, 649, 730, 846
BtsIMutI CAGTG 2 cut(s) 334, 627
BveI ACCTGC 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 181
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 179
ClaI ATCGAT 1 cut(s) 456
CseI GACGC 3 cut(s) 176, 197, 210
Csp6I GTAC 2 cut(s) 271, 571
CviAII CATG 7 cut(s) 160, 184, 208, 260, 605, 803, 838
CviQI GTAC 2 cut(s) 271, 571
DdeI CTNAG 1 cut(s) 447
DpnI GATC 3 cut(s) 246, 543, 801
DpnII GATC 3 cut(s) 244, 541, 799
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 5 cut(s) 49, 89, 94, 629, 791
EarI CTCTTC 5 cut(s) 49, 89, 94, 629, 791
Eco105I TACGTA 1 cut(s) 685
Eco130I CCWWGG 2 cut(s) 159, 755
Eco32I GATATC 1 cut(s) 676
Eco57I CTGAAG 3 cut(s) 350, 546, 764
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 159, 755
ErhI CCWWGG 2 cut(s) 159, 755
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 7 cut(s) 163, 187, 211, 263, 608, 806, 841
FaiI YATR 8 cut(s) 161, 185, 209, 261, 436, 606, 804, 839
FaqI GGGAC 1 cut(s) 736
FatI CATG 7 cut(s) 159, 183, 207, 259, 604, 802, 837
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 486, 831
FokI GGATG 6 cut(s) 248, 414, 518, 636, 737, 833
Fsp4HI GCNGC 2 cut(s) 486, 831
FspBI CTAG 2 cut(s) 230, 767
GluI GCNGC 2 cut(s) 486, 831
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 125, 180, 729
HgaI GACGC 3 cut(s) 176, 197, 210
Hin1I GRCGYC 3 cut(s) 168, 189, 202
Hin1II CATG 7 cut(s) 163, 187, 211, 263, 608, 806, 841
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 2 cut(s) 299, 443
HpaII CCGG 3 cut(s) 125, 180, 729
Hpy166II GTNNAC 3 cut(s) 408, 775, 858
Hpy188I TCNGA 6 cut(s) 304, 448, 586, 654, 744, 764
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 3 cut(s) 408, 775, 858
Hpy99I CGWCG 4 cut(s) 170, 204, 218, 221
HpyAV CCTTC 7 cut(s) 58, 123, 131, 591, 697, 712, 731
HpyCH4III ACNGT 2 cut(s) 440, 631
HpyCH4IV ACGT 2 cut(s) 373, 684
HpyCH4V TGCA 3 cut(s) 380, 649, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 176, 367
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 373, 684
Hsp92I GRCGYC 3 cut(s) 168, 189, 202
Hsp92II CATG 7 cut(s) 163, 187, 211, 263, 608, 806, 841
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 3 cut(s) 244, 541, 799
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 2 cut(s) 472, 817
LweI GCATC 4 cut(s) 159, 166, 658, 715
MaeI CTAG 2 cut(s) 230, 767
MaeII ACGT 2 cut(s) 373, 684
MaeIII GTNAC 2 cut(s) 278, 388
MalI GATC 3 cut(s) 246, 543, 801
MboI GATC 3 cut(s) 244, 541, 799
MfeI CAATTG 1 cut(s) 274
MluCI AATT 2 cut(s) 274, 778
MnlI CCTC 7 cut(s) 123, 215, 454, 688, 708, 727, 794
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 2 cut(s) 18, 862
MslI CAYNNNNRTG 1 cut(s) 403
MspI CCGG 3 cut(s) 125, 180, 729
MspR9I CCNGG 1 cut(s) 730
MunI CAATTG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 32, 176, 367
NaeI GCCGGC 1 cut(s) 181
NciI CCSGG 1 cut(s) 730
NcoI CCATGG 1 cut(s) 159
NdeII GATC 3 cut(s) 244, 541, 799
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 7 cut(s) 163, 187, 211, 263, 608, 806, 841
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 403
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 629
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 299, 443
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 487, 832
Ppu21I YACGTR 1 cut(s) 685
Psp1406I AACGTT 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 579
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 2 cut(s) 272, 572
RsaNI GTAC 2 cut(s) 271, 571
RseI CAYNNNNRTG 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 629
SaqAI TTAA 2 cut(s) 18, 862
SatI GCNGC 2 cut(s) 486, 831
Sau3AI GATC 3 cut(s) 244, 541, 799
ScrFI CCNGG 1 cut(s) 730
SfaNI GCATC 4 cut(s) 159, 166, 658, 715
SmiMI CAYNNNNRTG 1 cut(s) 403
SnaBI TACGTA 1 cut(s) 685
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 2 cut(s) 274, 778
SspMI CTAG 2 cut(s) 230, 767
StyD4I CCNGG 1 cut(s) 728
StyI CCWWGG 2 cut(s) 159, 755
TaaI ACNGT 2 cut(s) 440, 631
TaiI ACGT 2 cut(s) 376, 687
TaqI TCGA 2 cut(s) 213, 456
TasI AATT 2 cut(s) 274, 778
TatI WGTACW 2 cut(s) 270, 570
TfiI GAWTC 2 cut(s) 299, 443
Tru1I TTAA 2 cut(s) 18, 862
Tru9I TTAA 2 cut(s) 18, 862
TscAI CASTG 2 cut(s) 334, 634
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 2 cut(s) 485, 830
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 6 cut(s) 59, 65, 522, 621, 678, 854
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 334, 634
Tth111I GACNNNGTC 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 230, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.