Rmu_sc0002252.1_g000013

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002252.1
OG0012107
Physical Location & Seq
Reverse (-)
64904 .. 69331
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
atgccatttccaattttgaagcaacgaagcattatgtggttcttcaaccccaaccccaaccccaaccccaaacccaacttgttcttctttctcattttgggttccctcctcctcttatcccatcattcatttttcaccatttgcagagccgcacttgatgactccggggaagttggtgatgaacttccatttacttatgttgagggaactggtaaaggaccaaagaaatggggtcaaattgacccacattggaaagtttgtgataatggagaaatgcagtctcctattgatcttcttgacggcagggtgcaggttttccctaacttggggaaattgaaaagggattacaaacaagcccctgctactatcaagaacagagggcatgacattacggtgaggtggaaagaagacgcagggaaaatcaatattaatggtacagactataatctgctacaatgtcattggcattcaccttctgaacacacattcaatggatcaaggtatgctttggagctccatgttgttcatacaagctctactggaaagattgctgttattggaattgtatacaaatatggccgacctgatcccttcctttcaaagctgttccaccacataaaatcagttgggaaagaagaggttgatattggcattattaatccaggagacatcaagtttggaagcagaaagtattacagatatattggttctctcactgttcctccctgcactgagggtgtaatttggacaatagtcaaaaaggtgaggacagtttcaagggagcaagtgagagcactaagggagactgttcatgatggatatgaggaaaatgcaaggccaactcagcaattcaatgggagaccagtgttgttatacactccaggggagaatggaggttctggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

301

Amino Acids

34.03

Weight (kDa)

9.12

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 73 - 290 9.7e-43 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 567
AciI CCGC 1 cut(s) 150
AclWI GGATC 2 cut(s) 502, 581
AcoI YGGCCR 1 cut(s) 577
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 325, 326
AgsI TTSAA 7 cut(s) 19, 46, 337, 490, 600, 777, 853
AjnI CCWGG 2 cut(s) 661, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 514, 534, 604
AluI AGCT 3 cut(s) 514, 534, 604
Alw21I GWGCWC 2 cut(s) 516, 796
Alw26I GTCTC 4 cut(s) 285, 660, 797, 853
AlwI GGATC 2 cut(s) 502, 581
AoxI GGCC 2 cut(s) 577, 836
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AseI ATTAAT 2 cut(s) 429, 657
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 5 cut(s) 127, 188, 406, 462, 775
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 516, 796
BccI CCATC 2 cut(s) 129, 809
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 663, 882
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 4 cut(s) 285, 660, 797, 853
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 166, 663, 882
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 3 cut(s) 166, 663, 882
BoxI GACNNNNGTC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 165, 881
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 326
Bse1I ACTGG 3 cut(s) 214, 544, 863
BseBI CCWGG 2 cut(s) 663, 882
BseDI CCNNGG 2 cut(s) 165, 881
BseLI CCNNNNNNNGG 2 cut(s) 325, 326
BseMII CTCAG 2 cut(s) 723, 857
BseNI ACTGG 3 cut(s) 214, 544, 863
BseRI GAGGAG 2 cut(s) 98, 101
BsgI GTGCAG 2 cut(s) 329, 712
BshFI GGCC 2 cut(s) 579, 838
BsiHKAI GWGCWC 2 cut(s) 516, 796
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 325, 326
BsmAI GTCTC 4 cut(s) 285, 660, 797, 853
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 579, 838
Bso31I GGTCTC 1 cut(s) 853
Bsp1286I GDGCHC 2 cut(s) 516, 796
Bsp143I GATC 3 cut(s) 289, 494, 586
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 579, 838
BspCNI CTCAG 2 cut(s) 724, 856
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 2 cut(s) 502, 581
BspTNI GGTCTC 1 cut(s) 853
BsrI ACTGG 3 cut(s) 214, 544, 863
BssECI CCNNGG 2 cut(s) 165, 881
BssMI GATC 3 cut(s) 289, 494, 586
BssNAI GTATAC 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 663, 882
Bst4CI ACNGT 4 cut(s) 394, 718, 772, 808
Bst6I CTCTTC 1 cut(s) 630
BstDEI CTNAG 3 cut(s) 732, 797, 843
BstKTI GATC 3 cut(s) 292, 497, 589
BstMAI GTCTC 4 cut(s) 285, 660, 797, 853
BstMBI GATC 3 cut(s) 289, 494, 586
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstNI CCWGG 2 cut(s) 663, 882
BstPAI GACNNNNGTC 1 cut(s) 752
BstSCI CCNGG 3 cut(s) 164, 661, 880
BstV2I GAAGAC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 228
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 2 cut(s) 579, 838
BtsIMutI CAGTG 3 cut(s) 714, 729, 870
BveI ACCTGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 811
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 383, 518, 812
CviJI RGCY 7 cut(s) 149, 356, 514, 534, 579, 604, 838
CviKI_1 RGCY 7 cut(s) 149, 356, 514, 534, 579, 604, 838
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 3 cut(s) 732, 797, 843
DpnI GATC 3 cut(s) 291, 496, 588
DpnII GATC 3 cut(s) 289, 494, 586
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Ecl136II GAGCTC 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 853
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 661, 880
EcoT38I GRGCYC 1 cut(s) 516
FaeI CATG 3 cut(s) 386, 521, 815
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 3 cut(s) 382, 517, 811
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 2 cut(s) 579, 838
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 386, 521, 815
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 165
HphI GGTGA 5 cut(s) 127, 188, 406, 462, 775
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 3 cut(s) 296, 370, 812
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 2 cut(s) 483, 601
HpyCH4III ACNGT 4 cut(s) 394, 718, 772, 808
HpyCH4V TGCA 5 cut(s) 144, 277, 310, 729, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 3 cut(s) 732, 797, 843
Hsp92II CATG 3 cut(s) 386, 521, 815
Kzo9I GATC 3 cut(s) 289, 494, 586
LmnI GCTCC 3 cut(s) 511, 519, 781
MalI GATC 3 cut(s) 291, 496, 588
MboI GATC 3 cut(s) 289, 494, 586
MboII GAAGA 5 cut(s) 34, 76, 284, 419, 647
MhlI GDGCHC 2 cut(s) 516, 796
MluCI AATT 6 cut(s) 12, 237, 332, 561, 741, 848
MlyI GAGTC 1 cut(s) 155
MseI TTAA 2 cut(s) 429, 657
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 3 cut(s) 166, 663, 882
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 2 cut(s) 663, 882
MwoI GCNNNNNNNGC 1 cut(s) 844
NciI CCSGG 1 cut(s) 166
NdeII GATC 3 cut(s) 289, 494, 586
NlaIII CATG 3 cut(s) 386, 521, 815
NlaIV GGNNCC 1 cut(s) 103
PagI TCATGA 1 cut(s) 811
PctI GAATGC 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PshAI GACNNNNGTC 1 cut(s) 752
PshBI ATTAAT 2 cut(s) 429, 657
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 661, 880
PspGI CCWGG 2 cut(s) 661, 880
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 429, 657
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 289, 494, 586
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 166, 663, 882
SduI GDGCHC 2 cut(s) 516, 796
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 6 cut(s) 12, 237, 332, 561, 741, 848
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 427
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 164, 661, 880
TaaI ACNGT 4 cut(s) 394, 718, 772, 808
TasI AATT 6 cut(s) 12, 237, 332, 561, 741, 848
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 429, 657
Tru9I TTAA 2 cut(s) 429, 657
TscAI CASTG 3 cut(s) 721, 736, 870
TspDTI ATGAA 4 cut(s) 117, 195, 515, 800
TspRI CASTG 3 cut(s) 721, 736, 870
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 2 cut(s) 429, 657
XmiI GTMKAC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.