Rmu_sc0002264.1_g000029

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002264.1
OG0015196
Physical Location & Seq
Reverse (-)
88260 .. 91022
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
atgtctagcagagctctagtggcagtagggatatttgggctcatatttgtaagccttacagggcagtgctatggggcactagaggtagggttctacgagagaaagtgccttgctgatgttgaaaaagtagtagctgatgtagtcaaggcaaagtacaaaatggaccgaacaattgctgctgctctcgttcgcatgcagttccacgattgctttgtgaatggatgtgatgcatccattctactagatggaagctccagtgagaaaacagctcctccgaatctcagtgtacggggttatgatgtcattgatgccgcaaaagctgcagttgaagttgtatgcccaggaaaggtctcctgctcggatatcattgtaatggctaccagagaagctgtatgtctgagtggaggagggcgatacagtgttcaaactgggagaagagatggctttgtatctcttgcatcaaatgttgatctcccagctccatcaatttcagtgaatcaatctgttgcagcatttgctagaaaaggactcaatgccattgacatggtttatcttcttggcggtcacaccattggggtggcacattgttttctcttccaagaccgtctgtacaatttccaaaacactggcggacctgaccggagcatggattcatcattgctgcgaaagctgagatctatctgccctcaaaattcagcaggcagtaaaactgctgatcttgaccagaacgagtacgtaccaagttcgttcattgttgacaactcattctacaagcaaatacgagccaggagaggagttcttcaaatcgaccaagagctagctttcgaccccataactcagtccacagtgacaacaattgccaatagttttggcttctccgtgaaatttgggcaggccatggttaagttgggagcagtgggagtacttacaggcacgcaaggggagatcaggaaatcatgcagggcagttaacactccttga

Protein Analysis

326

Amino Acids

34.91

Weight (kDa)

8.64

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 289 7.2e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 312, 561, 630
AcsI RAATTY 2 cut(s) 691, 884
AfaI GTAC 6 cut(s) 155, 288, 611, 734, 738, 924
AfiI CCNNNNNNNGG 2 cut(s) 346, 646
AgsI TTSAA 4 cut(s) 122, 329, 425, 803
AjnI CCWGG 2 cut(s) 340, 785
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 355
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 5 cut(s) 176, 179, 320, 509, 661
ApoI RAATTY 2 cut(s) 691, 884
AspS9I GGNCC 2 cut(s) 163, 632
AsuNHI GCTAGC 1 cut(s) 817
AvaII GGWCC 2 cut(s) 163, 632
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 2 cut(s) 16, 42
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 5 cut(s) 163, 166, 307, 521, 648
BccI CCATC 3 cut(s) 239, 434, 490
BciT130I CCWGG 2 cut(s) 342, 787
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
BfmI CTRYAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 674
BisI GCNGC 6 cut(s) 177, 180, 312, 321, 510, 662
BlsI GCNGC 6 cut(s) 178, 181, 313, 322, 511, 663
BmcAI AGTACT 1 cut(s) 924
Bme1390I CCNGG 2 cut(s) 342, 787
Bme18I GGWCC 2 cut(s) 163, 632
BmgT120I GGNCC 2 cut(s) 163, 632
BmrFI CCNGG 2 cut(s) 342, 787
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 4 cut(s) 217, 239, 298, 467
BmtI GCTAGC 1 cut(s) 821
BmuI ACTGGG 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 340, 897
BsaWI WCCGGW 1 cut(s) 639
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 646
Bse1I ACTGG 3 cut(s) 255, 433, 631
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 2 cut(s) 342, 787
BseDI CCNNGG 2 cut(s) 340, 897
BseGI GGATG 2 cut(s) 227, 230
BseLI CCNNNNNNNGG 2 cut(s) 346, 646
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 4 cut(s) 295, 389, 662, 851
BseNI ACTGG 3 cut(s) 255, 433, 631
BseRI GAGGAG 3 cut(s) 261, 420, 807
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 5 cut(s) 163, 166, 307, 521, 648
BseYI CCCAGC 1 cut(s) 475
BshFI GGCC 1 cut(s) 896
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 346, 646
BsmAI GTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 896
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 16, 42, 79
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 4 cut(s) 469, 674, 715, 945
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 3 cut(s) 312, 561, 630
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 4 cut(s) 294, 390, 663, 850
BspMAI CTGCAG 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 609
BsrI ACTGG 3 cut(s) 255, 433, 631
BssECI CCNNGG 2 cut(s) 340, 897
BssMI GATC 4 cut(s) 469, 674, 715, 945
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 2 cut(s) 342, 787
Bst4CI ACNGT 3 cut(s) 419, 605, 847
Bst6I CTCTTC 2 cut(s) 430, 599
BstAPI GCANNNNNTGC 2 cut(s) 320, 515
BstAUI TGTACA 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 5 cut(s) 194, 700, 819, 894, 935
BstDEI CTNAG 4 cut(s) 281, 398, 671, 837
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 227, 230
BstKTI GATC 4 cut(s) 472, 677, 718, 948
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 4 cut(s) 469, 674, 715, 945
BstMWI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
BstNI CCWGG 2 cut(s) 342, 787
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 340, 785
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 79
BstSNI TACGTA 1 cut(s) 736
BstV1I GCAGC 5 cut(s) 163, 166, 307, 521, 648
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 3 cut(s) 544, 577, 626
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 227, 230
BtsI GCAGTG 2 cut(s) 71, 921
BtsIMutI CAGTG 8 cut(s) 71, 262, 289, 424, 498, 624, 852, 921
Cac8I GCNNGC 5 cut(s) 194, 700, 819, 894, 935
Cfr13I GGNCC 2 cut(s) 163, 632
Csp6I GTAC 6 cut(s) 154, 287, 610, 733, 737, 923
CviAII CATG 5 cut(s) 193, 544, 646, 898, 957
CviQI GTAC 6 cut(s) 154, 287, 610, 733, 737, 923
DdeI CTNAG 4 cut(s) 281, 398, 671, 837
DpnI GATC 4 cut(s) 471, 676, 717, 947
DpnII GATC 4 cut(s) 469, 674, 715, 945
Eam1104I CTCTTC 2 cut(s) 430, 599
EarI CTCTTC 2 cut(s) 430, 599
EciI GGCGGA 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 14
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 2 cut(s) 16, 42
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 163, 632
Eco53kI GAGCTC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 340, 785
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 897
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 16, 42
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 5 cut(s) 196, 547, 649, 901, 960
FatI CATG 5 cut(s) 192, 543, 645, 897, 956
Fnu4HI GCNGC 6 cut(s) 177, 180, 312, 321, 510, 662
FokI GGATG 2 cut(s) 217, 234
FriOI GRGCYC 2 cut(s) 16, 42
Fsp4HI GCNGC 6 cut(s) 177, 180, 312, 321, 510, 662
FspBI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
GluI GCNGC 6 cut(s) 177, 180, 312, 321, 510, 662
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 896
HapII CCGG 1 cut(s) 640
Hin1II CATG 5 cut(s) 196, 547, 649, 901, 960
HincII GTYRAC 2 cut(s) 757, 970
HindII GTYRAC 2 cut(s) 757, 970
HinfI GANTC 4 cut(s) 277, 496, 528, 650
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 1 cut(s) 640
Hpy166II GTNNAC 4 cut(s) 287, 757, 843, 970
Hpy188I TCNGA 3 cut(s) 276, 361, 399
Hpy188III TCNNGA 2 cut(s) 719, 949
Hpy8I GTNNAC 4 cut(s) 287, 757, 843, 970
HpyCH4III ACNGT 3 cut(s) 419, 605, 847
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 6 cut(s) 196, 230, 323, 458, 509, 960
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
HpyF3I CTNAG 4 cut(s) 281, 398, 671, 837
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 5 cut(s) 196, 547, 649, 901, 960
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 4 cut(s) 469, 674, 715, 945
LmnI GCTCC 5 cut(s) 257, 274, 484, 642, 911
Lsp1109I GCAGC 5 cut(s) 163, 166, 307, 521, 648
LweI GCATC 4 cut(s) 217, 239, 298, 467
MaeI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 2 cut(s) 563, 847
MalI GATC 4 cut(s) 471, 676, 717, 947
MboI GATC 4 cut(s) 469, 674, 715, 945
MboII GAAGA 4 cut(s) 447, 545, 586, 791
MfeI CAATTG 2 cut(s) 171, 855
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 3 cut(s) 16, 42, 79
MluCI AATT 6 cut(s) 171, 486, 613, 691, 855, 884
MlyI GAGTC 1 cut(s) 522
MnlI CCTC 6 cut(s) 76, 282, 398, 401, 696, 785
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 2 cut(s) 903, 969
MslI CAYNNNNRTG 3 cut(s) 371, 542, 575
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 342, 787
MunI CAATTG 2 cut(s) 171, 855
MvaI CCWGG 2 cut(s) 342, 787
MwoI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
NcoI CCATGG 1 cut(s) 897
NdeII GATC 4 cut(s) 469, 674, 715, 945
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 5 cut(s) 196, 547, 649, 901, 960
NmuCI GTSAC 2 cut(s) 563, 847
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 196
PaeI GCATGC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 277, 496, 650
PkrI GCNGC 6 cut(s) 178, 181, 313, 322, 511, 663
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Ppu21I YACGTR 1 cut(s) 736
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 340, 785
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 2 cut(s) 340, 785
PspPI GGNCC 2 cut(s) 163, 632
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 6 cut(s) 155, 288, 611, 734, 738, 924
RsaNI GTAC 6 cut(s) 154, 287, 610, 733, 737, 923
RseI CAYNNNNRTG 3 cut(s) 371, 542, 575
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 903, 969
SatI GCNGC 6 cut(s) 177, 180, 312, 321, 510, 662
Sau3AI GATC 4 cut(s) 469, 674, 715, 945
Sau96I GGNCC 2 cut(s) 163, 632
ScaI AGTACT 1 cut(s) 924
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 2 cut(s) 342, 787
SduI GDGCHC 3 cut(s) 16, 42, 79
SfaNI GCATC 4 cut(s) 217, 239, 298, 467
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 163, 632
SmiMI CAYNNNNRTG 3 cut(s) 371, 542, 575
SnaBI TACGTA 1 cut(s) 736
SphI GCATGC 1 cut(s) 196
Sse9I AATT 6 cut(s) 171, 486, 613, 691, 855, 884
SsiI CCGC 3 cut(s) 312, 561, 630
SspMI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 340, 785
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 3 cut(s) 419, 605, 847
TaiI ACGT 1 cut(s) 738
TaqI TCGA 2 cut(s) 807, 825
TaqII GACCGA 1 cut(s) 180
TasI AATT 6 cut(s) 171, 486, 613, 691, 855, 884
TatI WGTACW 3 cut(s) 153, 609, 922
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 3 cut(s) 277, 496, 650
Tru1I TTAA 2 cut(s) 903, 969
Tru9I TTAA 2 cut(s) 903, 969
TscAI CASTG 8 cut(s) 71, 262, 289, 424, 498, 631, 852, 921
TseFI GTSAC 2 cut(s) 563, 847
TseI GCWGC 5 cut(s) 176, 179, 320, 509, 661
Tsp45I GTSAC 2 cut(s) 563, 847
TspDTI ATGAA 2 cut(s) 642, 739
TspGWI ACGGA 1 cut(s) 868
TspRI CASTG 8 cut(s) 71, 262, 289, 424, 498, 631, 852, 921
VpaK11BI GGWCC 2 cut(s) 163, 632
XapI RAATTY 2 cut(s) 691, 884
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XspI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
ZrmI AGTACT 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.