Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002292.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Reverse (-)

5001 .. 9777

Gene Structure 4777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgacgccgcccttcggtccaagtcaagccgcgtggcgacaaggtgacgcgccagcttggaacgccgcgcatttatccacgtgggacccgccgacccagggaggggggtttgaatcgggtcctccgcgacgccaccgcataggctacgccttccctctgtataaagagcagaccttcatccaaccgtcgcagatcgcccacgccggacaacacggcatcgatctggtccccgtcgatgccgccaaggtcttgacccagcagagccccttcgactgcatcatccacaagctctacgacgacgactggaatcatcaattgaaggaatactcgtctctctatccccgcaccgtcatccttgacccgcacgagtccatcgcccgcctccacaaccgggtctcaatgctagacgtcatcaaagccgccttcaaagccccgcgagtagagaatgtcgggatccccaagcaggtctccaaattaagtttctgggtttttttttttcaactttatcaagaaaccgttgaaacaggaaaaccgatccgaaggttctcggttctggttcccgtcagttccggcactatcaactacaacaaccgaaccgaagttccctttccggtttcggttctggttcagggaaatttttgcattttcagaaccgaatccagccctagcaccggccaaaatacaccggccatattttggccgatgcttatggttaccatgcaaactgcacgcagacacgcagtaaggagttgggcccacatcaaccaatcttattgcgtgtctgtttcttattatggatgtggttcatcttttactcgaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

274

Amino Acids

30.91

Weight (kDa)

9.19

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	46 - 125	2.6e-23	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccII	CGCG	5 cut(s)	32, 50, 68, 127, 436
AclWI	GGATC	3 cut(s)	448, 461, 529
AcoI	YGGCCR	3 cut(s)	673, 687, 698
AcsI	RAATTY	1 cut(s)	634
AcvI	CACGTG	1 cut(s)	81
AcyI	GRCGYC	3 cut(s)	5, 130, 408
AfiI	CCNNNNNNNGG	8 cut(s)	14, 98, 102, 103, 391, 463, 671, 696
AgsI	TTSAA	5 cut(s)	113, 319, 427, 500, 521
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	586, 618
AluBI	AGCT	2 cut(s)	56, 289
AluI	AGCT	2 cut(s)	56, 289
Alw26I	GTCTC	3 cut(s)	336, 400, 472
AlwI	GGATC	3 cut(s)	448, 461, 529
AoxI	GGCC	4 cut(s)	673, 687, 698, 753
ApaI	GGGCCC	1 cut(s)	757
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	2 cut(s)	52, 70
AspS9I	GGNCC	6 cut(s)	17, 85, 119, 226, 753, 754
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	4 cut(s)	17, 85, 119, 226
BaeGI	GKGCMC	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	266, 757
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	81
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	3 cut(s)	336, 400, 472
BfaI	CTAG	2 cut(s)	404, 666
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	5 cut(s)	8, 30, 66, 240, 420
BlsI	GCNGC	5 cut(s)	9, 31, 67, 241, 421
Bme1390I	CCNGG	2 cut(s)	98, 392
Bme18I	GGWCC	4 cut(s)	17, 85, 119, 226
BmgT120I	GGNCC	6 cut(s)	17, 85, 119, 226, 753, 754
BmiI	GGNNCC	7 cut(s)	86, 87, 120, 228, 455, 558, 755
BmrFI	CCNGG	2 cut(s)	98, 392
BmsI	GCATC	4 cut(s)	225, 226, 285, 693
BpuMI	CCSGG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	81
BsaHI	GRCGYC	3 cut(s)	5, 130, 408
BsaI	GGTCTC	2 cut(s)	400, 472
BsaJI	CCNNGG	3 cut(s)	96, 97, 243
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 98, 102, 103, 391, 463, 671, 696
Bse118I	RCCGGY	2 cut(s)	671, 685
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	96, 97, 243
BseGI	GGATG	4 cut(s)	177, 279, 351, 803
BseLI	CCNNNNNNNGG	8 cut(s)	14, 98, 102, 103, 391, 463, 671, 696
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	5 cut(s)	32, 50, 68, 127, 436
BshFI	GGCC	4 cut(s)	675, 689, 700, 755
BshVI	ATCGAT	1 cut(s)	219
BsiSI	CCGG	6 cut(s)	204, 391, 570, 611, 672, 686
BslFI	GGGAC	2 cut(s)	98, 212
BslI	CCNNNNNNNGG	8 cut(s)	14, 98, 102, 103, 391, 463, 671, 696
BsmAI	GTCTC	3 cut(s)	336, 400, 472
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	2 cut(s)	98, 212
BsnI	GGCC	4 cut(s)	675, 689, 700, 755
Bso31I	GGTCTC	2 cut(s)	400, 472
Bsp120I	GGGCCC	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	266, 757
Bsp143I	GATC	4 cut(s)	192, 220, 453, 534
BspANI	GGCC	4 cut(s)	675, 689, 700, 755
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	5 cut(s)	32, 50, 68, 127, 436
BspLI	GGNNCC	7 cut(s)	86, 87, 120, 228, 455, 558, 755
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	3 cut(s)	448, 461, 529
BspTNI	GGTCTC	2 cut(s)	400, 472
BsrFI	RCCGGY	2 cut(s)	671, 685
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	2 cut(s)	671, 685
BssECI	CCNNGG	3 cut(s)	96, 97, 243
BssMI	GATC	4 cut(s)	192, 220, 453, 534
BssNI	GRCGYC	3 cut(s)	5, 130, 408
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	186, 349, 517
BstACI	GRCGYC	3 cut(s)	5, 130, 408
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	54, 379, 730
BstEII	GGTNACC	1 cut(s)	712
BstF5I	GGATG	4 cut(s)	177, 279, 351, 803
BstFNI	CGCG	5 cut(s)	32, 50, 68, 127, 436
BstHHI	GCGC	2 cut(s)	52, 70
BstKTI	GATC	4 cut(s)	195, 223, 456, 537
BstMAI	GTCTC	3 cut(s)	336, 400, 472
BstMBI	GATC	4 cut(s)	192, 220, 453, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 428
BstNI	CCWGG	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	96, 390
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	5 cut(s)	32, 50, 68, 127, 436
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	4 cut(s)	675, 689, 700, 755
BsuTUI	ATCGAT	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	4 cut(s)	177, 279, 351, 803
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	54, 379, 730
CfoI	GCGC	2 cut(s)	52, 70
Cfr10I	RCCGGY	2 cut(s)	671, 685
Cfr13I	GGNCC	6 cut(s)	17, 85, 119, 226, 753, 754
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	3 cut(s)	13, 56, 138
CspCI	CAANNNNNGTGG	2 cut(s)	14, 49
CviAII	CATG	1 cut(s)	718
DpnI	GATC	4 cut(s)	194, 222, 455, 536
DpnII	GATC	4 cut(s)	192, 220, 453, 534
EaeI	YGGCCR	3 cut(s)	673, 687, 698
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	266, 757
Eco31I	GGTCTC	2 cut(s)	400, 472
Eco47I	GGWCC	4 cut(s)	17, 85, 119, 226
Eco72I	CACGTG	1 cut(s)	81
Eco91I	GGTNACC	1 cut(s)	712
EcoO109I	RGGNCCY	2 cut(s)	85, 119
EcoO65I	GGTNACC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	266, 757
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	1 cut(s)	721
FaiI	YATR	6 cut(s)	140, 162, 692, 710, 719, 795
FaqI	GGGAC	2 cut(s)	98, 212
FatI	CATG	1 cut(s)	717
FauI	CCCGC	5 cut(s)	96, 350, 369, 386, 441
Fnu4HI	GCNGC	5 cut(s)	8, 30, 66, 240, 420
FokI	GGATG	4 cut(s)	164, 266, 338, 810
FriOI	GRGCYC	2 cut(s)	266, 757
Fsp4HI	GCNGC	5 cut(s)	8, 30, 66, 240, 420
FspBI	CTAG	2 cut(s)	404, 666
GlaI	GCGC	2 cut(s)	51, 69
GluI	GCNGC	5 cut(s)	8, 30, 66, 240, 420
GsaI	CCCAGC	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	675, 689, 700, 755
HapII	CCGG	6 cut(s)	204, 391, 570, 611, 672, 686
HgaI	GACGC	3 cut(s)	13, 56, 138
HhaI	GCGC	2 cut(s)	52, 70
Hin1I	GRCGYC	3 cut(s)	5, 130, 408
Hin1II	CATG	1 cut(s)	721
Hin6I	GCGC	2 cut(s)	50, 68
HinP1I	GCGC	2 cut(s)	50, 68
HinfI	GANTC	4 cut(s)	113, 307, 368, 656
HpaII	CCGG	6 cut(s)	204, 391, 570, 611, 672, 686
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	539, 650
Hpy188III	TCNNGA	3 cut(s)	250, 451, 509
Hpy99I	CGWCG	5 cut(s)	132, 190, 236, 299, 302
HpyAV	CCTTC	7 cut(s)	22, 160, 184, 277, 313, 433, 534
HpyCH4III	ACNGT	3 cut(s)	186, 349, 517
HpyCH4IV	ACGT	3 cut(s)	80, 408, 821
HpyCH4V	TGCA	4 cut(s)	276, 642, 721, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 428
HpySE526I	ACGT	3 cut(s)	80, 408, 821
Hsp92I	GRCGYC	3 cut(s)	5, 130, 408
Hsp92II	CATG	1 cut(s)	721
HspAI	GCGC	2 cut(s)	50, 68
KflI	GGGWCCC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	192, 220, 453, 534
LweI	GCATC	4 cut(s)	225, 226, 285, 693
MaeI	CTAG	2 cut(s)	404, 666
MaeII	ACGT	3 cut(s)	80, 408, 821
MaeIII	GTNAC	2 cut(s)	44, 712
MalI	GATC	4 cut(s)	194, 222, 455, 536
MboI	GATC	4 cut(s)	192, 220, 453, 534
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	266, 757
MluCI	AATT	3 cut(s)	314, 473, 634
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	95, 132, 165, 392
MseI	TTAA	1 cut(s)	476
MspI	CCGG	6 cut(s)	204, 391, 570, 611, 672, 686
MspR9I	CCNGG	2 cut(s)	98, 392
MunI	CAATTG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	5 cut(s)	32, 50, 68, 127, 436
MwoI	GCNNNNNNNGC	2 cut(s)	62, 428
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	4 cut(s)	192, 220, 453, 534
NlaIII	CATG	1 cut(s)	721
NlaIV	GGNNCC	7 cut(s)	86, 87, 120, 228, 455, 558, 755
NmuCI	GTSAC	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	113, 307, 656
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	5 cut(s)	9, 31, 67, 241, 421
PleI	GAGTC	1 cut(s)	376
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	81
PpuMI	RGGWCCY	2 cut(s)	85, 119
Psp5II	RGGWCCY	2 cut(s)	85, 119
Psp6I	CCWGG	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	7 cut(s)	86, 87, 120, 228, 455, 558, 755
PspOMI	GGGCCC	1 cut(s)	753
PspPI	GGNCC	6 cut(s)	17, 85, 119, 226, 753, 754
PspPPI	RGGWCCY	2 cut(s)	85, 119
PsuI	RGATCY	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	5 cut(s)	8, 30, 66, 240, 420
Sau3AI	GATC	4 cut(s)	192, 220, 453, 534
Sau96I	GGNCC	6 cut(s)	17, 85, 119, 226, 753, 754
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	98, 392
SduI	GDGCHC	2 cut(s)	266, 757
SfaNI	GCATC	4 cut(s)	225, 226, 285, 693
SinI	GGWCC	4 cut(s)	17, 85, 119, 226
Sse9I	AATT	3 cut(s)	314, 473, 634
SspMI	CTAG	2 cut(s)	404, 666
StyD4I	CCNGG	2 cut(s)	96, 390
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	186, 349, 517
TaiI	ACGT	3 cut(s)	83, 411, 824
TaqI	TCGA	4 cut(s)	219, 234, 270, 817
TaqII	GACCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	314, 473, 634
TauI	GCSGC	5 cut(s)	10, 32, 68, 242, 422
TfiI	GAWTC	3 cut(s)	113, 307, 656
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	166, 795
Van91I	CCANNNNNTGG	1 cut(s)	696
VpaK11BI	GGWCC	4 cut(s)	17, 85, 119, 226
XapI	RAATTY	1 cut(s)	634
XspI	CTAG	2 cut(s)	404, 666
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.