Rmu_sc0002345.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002345.1
OG0006549
Physical Location & Seq
Forward (+)
1 .. 2581
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
attgcggctaggcgtggaggtctggacatgttgggttcggaagatgctacttttcgttatttgattgaatcatttccacgtcttctattgttgtccttggagcgtcacatgacccctgtggttgaatatcttgaaaatatgggagtccgcagagaaagcatgagaaccatatttttgttatttccaccggttatattttgcaacattaaagtcattacggcgagagtgcgttcttttaaagagtttggtctggaggataaagatgttggcagaatggtgattaaatatccatggattctatctacaagcattcacgagaacttcaaggaggttctttctttctttgatttagaaaaggtcccaaaagcgagtgttggctgcgcaatccgaagctggcctcatatcttgggttgttcgactagcactctaaaagtgatggttgaacagattgatgaattgggtattgcaaacaagaagttgggtcaggtgatctctagaagtcctcagctactattacggaaacctaaagaatttcttcaggtagtttcattcatggaaggtctaggatttgataaagaaactgttgggaccatacttggtcgctgtcctgaaatatttgctgccagcattgagagaacacttacgagaaagctggatttccttgcaagtattggtgtttcaaaagttcaccttcctcgggttatcaaaaagtacccggagcttcttgtgtctgacactgacagaactttacttcctcgggtgaagtacctgatgaagaaagggctgtcacagagggatattgcgttcatggtccgcagattttctcctttacttgggtacagcatcgaagaggttttgcgaccaaagcttgagttcctcttaaacaccatggagaagccaataacagaagtggtggactatccgagatacttcagttattcattagaaaagaagataaaaccaaggtacttggtgctaaagggaaaaaatatcgcgtgtagcttaaaggatatgttggctaaaaacgatgaagaattcgctcttgagtttatgagtggtgaaaatatgctcgtcacatctccttcgcttacacagcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

366

Amino Acids

41.94

Weight (kDa)

9.37

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 41 - 347 2e-104 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 382
AccII CGCG 1 cut(s) 995
AciI CCGC 3 cut(s) 5, 148, 814
AcsI RAATTY 2 cut(s) 530, 1034
AcuI CTGAAG 2 cut(s) 521, 916
AfaI GTAC 4 cut(s) 713, 767, 839, 968
AfiI CCNNNNNNNGG 2 cut(s) 697, 833
AflIII ACRYGT 1 cut(s) 27
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 6 cut(s) 68, 125, 134, 325, 443, 681
AjiI CACGTC 1 cut(s) 80
AloI GAACNNNNNNTCC 4 cut(s) 736, 768, 788, 820
AluBI AGCT 6 cut(s) 393, 508, 652, 721, 868, 1002
AluI AGCT 6 cut(s) 393, 508, 652, 721, 868, 1002
Ama87I CYCGRG 2 cut(s) 696, 756
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 378, 620
ApoI RAATTY 2 cut(s) 530, 1034
AsiGI ACCGGT 1 cut(s) 187
Asp700I GAANNNNTTC 2 cut(s) 72, 534
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 3 cut(s) 358, 588, 811
AsuC2I CCSGG 1 cut(s) 716
AsuHPI GGTGA 5 cut(s) 289, 499, 680, 772, 1070
AvaI CYCGRG 2 cut(s) 696, 756
AvaII GGWCC 3 cut(s) 358, 588, 811
BaeI ACNNNNGTAYC 2 cut(s) 919, 952
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 365, 607
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 716
BfaI CTAG 4 cut(s) 9, 420, 495, 563
BisI GCNGC 3 cut(s) 6, 379, 621
BlsI GCNGC 3 cut(s) 7, 380, 622
Bme1390I CCNGG 1 cut(s) 716
Bme18I GGWCC 3 cut(s) 358, 588, 811
BmeT110I CYCGRG 2 cut(s) 696, 756
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 358, 588, 811
BmiI GGNNCC 2 cut(s) 360, 589
BmrFI CCNGG 1 cut(s) 716
BmsI GCATC 2 cut(s) 34, 852
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 890, 1064
BpuMI CCSGG 1 cut(s) 716
BsaJI CCNNGG 6 cut(s) 96, 290, 695, 755, 888, 962
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 697, 833
Bse118I RCCGGY 1 cut(s) 187
BseDI CCNNGG 6 cut(s) 96, 290, 695, 755, 888, 962
BseLI CCNNNNNNNGG 2 cut(s) 697, 833
BseMII CTCAG 1 cut(s) 518
BseXI GCAGC 2 cut(s) 365, 607
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 187
BsiHKCI CYCGRG 2 cut(s) 696, 756
BsiSI CCGG 2 cut(s) 188, 716
BslFI GGGAC 2 cut(s) 344, 601
BslI CCNNNNNNNGG 2 cut(s) 697, 833
BsmFI GGGAC 2 cut(s) 344, 601
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 397
BsoBI CYCGRG 2 cut(s) 696, 756
Bsp143I GATC 1 cut(s) 489
Bsp19I CCATGG 2 cut(s) 290, 888
BspACI CCGC 3 cut(s) 5, 148, 814
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 517
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 2 cut(s) 360, 589
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 6 cut(s) 96, 290, 695, 755, 888, 962
BssMI GATC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 4 cut(s) 96, 290, 888, 962
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 843
BstC8I GCNNGC 2 cut(s) 395, 625
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 2 cut(s) 290, 888
BstFNI CGCG 1 cut(s) 995
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 1 cut(s) 492
BstMBI GATC 1 cut(s) 489
BstMWI GCNNNNNNNGC 3 cut(s) 156, 865, 1093
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 714
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 2 cut(s) 365, 607
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 2 cut(s) 290, 888
BtrI CACGTC 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 395, 625
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 3 cut(s) 358, 588, 811
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 712, 766, 838, 967
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 7 cut(s) 28, 109, 160, 291, 553, 808, 889
CviQI GTAC 4 cut(s) 712, 766, 838, 967
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 4 cut(s) 96, 290, 888, 962
Eco47I GGWCC 3 cut(s) 358, 588, 811
Eco57I CTGAAG 2 cut(s) 521, 916
Eco88I CYCGRG 2 cut(s) 696, 756
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 1034
EcoT14I CCWWGG 4 cut(s) 96, 290, 888, 962
ErhI CCWWGG 4 cut(s) 96, 290, 888, 962
FaeI CATG 7 cut(s) 31, 112, 163, 294, 556, 811, 892
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 675, 707
FaqI GGGAC 2 cut(s) 344, 601
FatI CATG 7 cut(s) 27, 108, 159, 290, 552, 807, 888
Fnu4HI GCNGC 3 cut(s) 6, 379, 621
Fsp4HI GCNGC 3 cut(s) 6, 379, 621
FspBI CTAG 4 cut(s) 9, 420, 495, 563
FspI TGCGCA 1 cut(s) 382
GlaI GCGC 1 cut(s) 382
GluI GCNGC 3 cut(s) 6, 379, 621
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 397
HapII CCGG 2 cut(s) 188, 716
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 383
Hin1II CATG 7 cut(s) 31, 112, 163, 294, 556, 811, 892
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 3 cut(s) 68, 144, 295
HpaII CCGG 2 cut(s) 188, 716
HphI GGTGA 5 cut(s) 289, 499, 680, 772, 1070
Hpy166II GTNNAC 2 cut(s) 688, 916
Hpy188I TCNGA 4 cut(s) 40, 389, 733, 924
Hpy188III TCNNGA 7 cut(s) 23, 131, 251, 314, 495, 608, 1043
Hpy8I GTNNAC 2 cut(s) 688, 916
HpyAV CCTTC 3 cut(s) 551, 701, 1092
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 201, 467, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 865, 1093
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 7 cut(s) 31, 112, 163, 294, 556, 811, 892
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 100, 718
Lsp1109I GCAGC 2 cut(s) 365, 607
LweI GCATC 2 cut(s) 34, 852
MaeI CTAG 4 cut(s) 9, 420, 495, 563
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 3 cut(s) 104, 786, 1072
MalI GATC 1 cut(s) 491
MboI GATC 1 cut(s) 489
MboII GAAGA 7 cut(s) 53, 74, 527, 787, 860, 964, 1043
MluCI AATT 3 cut(s) 455, 530, 1034
MlyI GAGTC 1 cut(s) 153
MroXI GAANNNNTTC 2 cut(s) 72, 534
MseI TTAA 5 cut(s) 207, 237, 282, 881, 1004
MslI CAYNNNNRTG 1 cut(s) 1096
MspI CCGG 2 cut(s) 188, 716
MspR9I CCNGG 1 cut(s) 716
Mva1269I GAATGC 1 cut(s) 309
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 3 cut(s) 156, 865, 1093
NciI CCSGG 1 cut(s) 716
NcoI CCATGG 2 cut(s) 290, 888
NdeII GATC 1 cut(s) 489
NlaIII CATG 7 cut(s) 31, 112, 163, 294, 556, 811, 892
NlaIV GGNNCC 2 cut(s) 360, 589
NmuCI GTSAC 3 cut(s) 104, 786, 1072
NsbI TGCGCA 1 cut(s) 382
NspI RCATGY 1 cut(s) 31
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 2 cut(s) 72, 534
PfeI GAWTC 2 cut(s) 68, 295
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 3 cut(s) 7, 380, 622
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 358
PscI ACATGT 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 360, 589
PspPI GGNCC 3 cut(s) 358, 588, 811
PspPPI RGGWCCY 1 cut(s) 358
RsaI GTAC 4 cut(s) 713, 767, 839, 968
RsaNI GTAC 4 cut(s) 712, 766, 838, 967
RseI CAYNNNNRTG 1 cut(s) 1096
SaqAI TTAA 5 cut(s) 207, 237, 282, 881, 1004
SatI GCNGC 3 cut(s) 6, 379, 621
Sau3AI GATC 1 cut(s) 489
Sau96I GGNCC 3 cut(s) 358, 588, 811
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 716
SfaNI GCATC 2 cut(s) 34, 852
SinI GGWCC 3 cut(s) 358, 588, 811
SmiMI CAYNNNNRTG 1 cut(s) 1096
SmlI CTYRAG 2 cut(s) 869, 1043
SmoI CTYRAG 2 cut(s) 869, 1043
Sse9I AATT 3 cut(s) 455, 530, 1034
SsiI CCGC 3 cut(s) 5, 148, 814
SspI AATATT 1 cut(s) 615
SspMI CTAG 4 cut(s) 9, 420, 495, 563
StyD4I CCNGG 1 cut(s) 714
StyI CCWWGG 4 cut(s) 96, 290, 888, 962
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 416, 846
TasI AATT 3 cut(s) 455, 530, 1034
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 68, 295
Tru1I TTAA 5 cut(s) 207, 237, 282, 881, 1004
Tru9I TTAA 5 cut(s) 207, 237, 282, 881, 1004
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 3 cut(s) 104, 786, 1072
TseI GCWGC 2 cut(s) 378, 620
Tsp45I GTSAC 3 cut(s) 104, 786, 1072
TspDTI ATGAA 7 cut(s) 468, 537, 541, 788, 796, 930, 1044
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 358, 588, 811
XapI RAATTY 2 cut(s) 530, 1034
XbaI TCTAGA 1 cut(s) 494
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 72, 534
XspI CTAG 4 cut(s) 9, 420, 495, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.