Rmu_sc0002506.1_g000025

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002506.1
OG0005411
Physical Location & Seq
Forward (+)
106474 .. 111686
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
atgtcgtttatcctcccttgtagcattagcggcaacttgaaaagtagaaaacggttggatgtgagagacaatgggaagaaaaaaccaatggcgggtgtacttccttgttcatcatcaactctctctctactaactccactcaatttccattctcaagagcaatgcagagctttgtattctcaatctttaagcacccaaaggtgtggcctttttgtttgtgctgccaagaagaaagttagtttcacagaccaaattcttgattacattgaggggggtcctaagttgaggaaatggtatggggcacctgaacttttacctaaggatgggtctgttgctgaagatgaggacgaattatcagaaggagatgaaaccagggatgctgttttggtaactgacggagatagcgagatggggcagatggtaatattgtcattgattgtcaaaagagctagagtaaaagcattggtgaaggataagcgggctgcccttgaagcatttggaacttatgttgagtcattgactggagattcaagggacaagccattcctaaggagagtgctgagaggagtttccacagtaatatgcccaaatgaaggtttcttatctactgttgggagcttgaaaggggtaaaccatgtcattctcttatctcagttgtctgtttacaaaggtgccggtggcattcaagctctcatgaaaagcaatgcaagaaaattagccgaagaagatgagtcaatactgatggcctcaggaatcccttacaccatcatcagggctggctcgttacaaaattctccaggtggaactcagggctttagctttgaaaagggaactgccgcaaaaggaactcttagcaaagaggatgcagcctttatttgtgtggaagcagttgatgcagtccccaaggaaagattcatatttgaggtggtgaatggagatgacaaggtttcagattggaaagaatgtttgaatagactaatggagaaatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

330

Amino Acids

35.88

Weight (kDa)

8.32

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_10 PF13460 137 - 298 6.8e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 301, 671
AciI CCGC 4 cut(s) 30, 92, 478, 837
AcsI RAATTY 2 cut(s) 252, 790
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 92, 323, 593, 771
AgsI TTSAA 7 cut(s) 40, 491, 531, 622, 686, 824, 970
AjnI CCWGG 2 cut(s) 371, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AluBI AGCT 5 cut(s) 170, 449, 618, 689, 819
AluI AGCT 5 cut(s) 170, 449, 618, 689, 819
Alw26I GTCTC 1 cut(s) 60
AoxI GGCC 2 cut(s) 205, 744
ApeKI GCWGC 3 cut(s) 221, 482, 866
ApoI RAATTY 2 cut(s) 252, 790
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 478, 940
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 3 cut(s) 318, 548, 748
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 2 cut(s) 301, 671
BbvI GCAGC 3 cut(s) 208, 469, 878
BccI CCATC 5 cut(s) 317, 403, 412, 736, 773
BciT130I CCWGG 2 cut(s) 373, 798
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 450
BisI GCNGC 5 cut(s) 31, 222, 483, 837, 867
BlsI GCNGC 5 cut(s) 32, 223, 484, 838, 868
Bme1390I CCNGG 2 cut(s) 373, 798
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 276, 303, 673
BmrFI CCNGG 2 cut(s) 373, 798
BmsI GCATC 3 cut(s) 367, 853, 883
BpmI CTGGAG 2 cut(s) 543, 780
BpuEI CTTGAG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 372, 903
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 323, 593, 771
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 526
Bse21I CCTNAGG 3 cut(s) 318, 548, 748
Bse3DI GCAATG 2 cut(s) 167, 709
BseBI CCWGG 2 cut(s) 373, 798
BseDI CCNNGG 2 cut(s) 372, 903
BseGI GGATG 4 cut(s) 64, 328, 382, 868
BseLI CCNNNNNNNGG 4 cut(s) 92, 323, 593, 771
BseMI GCAATG 2 cut(s) 167, 709
BseMII CTCAG 4 cut(s) 551, 665, 762, 821
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 3 cut(s) 208, 469, 878
BshFI GGCC 2 cut(s) 207, 746
BshNI GGYRCC 2 cut(s) 301, 671
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 548, 884
BslI CCNNNNNNNGG 4 cut(s) 92, 323, 593, 771
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 2 cut(s) 548, 884
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 2 cut(s) 207, 746
Bsp1286I GDGCHC 1 cut(s) 304
BspACI CCGC 4 cut(s) 30, 92, 478, 837
BspANI GGCC 2 cut(s) 207, 746
BspCNI CTCAG 4 cut(s) 552, 664, 761, 820
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 3 cut(s) 276, 303, 673
BspT107I GGYRCC 2 cut(s) 301, 671
BsrDI GCAATG 2 cut(s) 167, 709
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 2 cut(s) 372, 903
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 373, 798
Bst4CI ACNGT 3 cut(s) 54, 577, 610
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 480, 778
BstDEI CTNAG 8 cut(s) 279, 318, 548, 560, 651, 748, 807, 851
BstF5I GGATG 4 cut(s) 64, 328, 382, 868
BstMAI GTCTC 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 30, 491, 893
BstNI CCWGG 2 cut(s) 373, 798
BstSCI CCNGG 2 cut(s) 371, 796
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 3 cut(s) 208, 469, 878
BstXI CCANNNNNNTGG 1 cut(s) 203
Bsu36I CCTNAGG 3 cut(s) 318, 548, 748
BsuRI GGCC 2 cut(s) 207, 746
BtsCI GGATG 4 cut(s) 64, 328, 382, 868
Cac8I GCNNGC 2 cut(s) 480, 778
CciI TCATGA 1 cut(s) 693
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 635, 694
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 8 cut(s) 279, 318, 548, 560, 651, 748, 807, 851
Eco130I CCWWGG 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 357
Eco81I CCTNAGG 3 cut(s) 318, 548, 748
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 371, 796
EcoT14I CCWWGG 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 903
FaeI CATG 2 cut(s) 638, 697
FaiI YATR 6 cut(s) 297, 507, 583, 636, 695, 917
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 2 cut(s) 548, 884
FatI CATG 2 cut(s) 634, 693
FauI CCCGC 2 cut(s) 85, 471
Fnu4HI GCNGC 5 cut(s) 31, 222, 483, 837, 867
FokI GGATG 4 cut(s) 71, 335, 389, 875
Fsp4HI GCNGC 5 cut(s) 31, 222, 483, 837, 867
FspBI CTAG 1 cut(s) 450
GluI GCNGC 5 cut(s) 31, 222, 483, 837, 867
GsuI CTGGAG 2 cut(s) 543, 780
HaeIII GGCC 2 cut(s) 207, 746
HapII CCGG 1 cut(s) 675
Hin1II CATG 2 cut(s) 638, 697
HinfI GANTC 5 cut(s) 512, 527, 731, 753, 912
HpaII CCGG 1 cut(s) 675
HphI GGTGA 2 cut(s) 478, 940
Hpy166II GTNNAC 3 cut(s) 98, 631, 664
Hpy188I TCNGA 2 cut(s) 358, 952
Hpy188III TCNNGA 4 cut(s) 155, 257, 694, 750
Hpy8I GTNNAC 3 cut(s) 98, 631, 664
HpyAV CCTTC 3 cut(s) 353, 463, 587
HpyCH4III ACNGT 3 cut(s) 54, 577, 610
HpyCH4V TGCA 4 cut(s) 165, 707, 866, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 491, 893
HpyF3I CTNAG 8 cut(s) 279, 318, 548, 560, 651, 748, 807, 851
Hsp92II CATG 2 cut(s) 638, 697
LmnI GCTCC 1 cut(s) 615
Lsp1109I GCAGC 3 cut(s) 208, 469, 878
LweI GCATC 3 cut(s) 367, 853, 883
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 388, 783
MboII GAAGA 5 cut(s) 88, 241, 350, 734, 737
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 5 cut(s) 142, 252, 350, 713, 790
MlyI GAGTC 2 cut(s) 521, 740
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 8 cut(s) 23, 262, 279, 337, 557, 757, 853, 916
MseI TTAA 2 cut(s) 188, 991
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 373, 798
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 2 cut(s) 373, 798
MwoI GCNNNNNNNGC 3 cut(s) 30, 491, 893
NlaIII CATG 2 cut(s) 638, 697
NlaIV GGNNCC 3 cut(s) 276, 303, 673
PagI TCATGA 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 527, 753, 912
PkrI GCNGC 5 cut(s) 32, 223, 484, 838, 868
PleI GAGTC 2 cut(s) 520, 739
PpsI GAGTC 2 cut(s) 520, 739
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 371, 796
PspGI CCWGG 2 cut(s) 371, 796
PspN4I GGNNCC 3 cut(s) 276, 303, 673
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 188, 991
SatI GCNGC 5 cut(s) 31, 222, 483, 837, 867
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 2 cut(s) 521, 740
ScrFI CCNGG 2 cut(s) 373, 798
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 367, 853, 883
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 5 cut(s) 142, 252, 350, 713, 790
SsiI CCGC 4 cut(s) 30, 92, 478, 837
SspI AATATT 1 cut(s) 426
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 371, 796
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 3 cut(s) 54, 577, 610
TasI AATT 5 cut(s) 142, 252, 350, 713, 790
TatI WGTACW 1 cut(s) 97
TauI GCSGC 2 cut(s) 33, 839
TfiI GAWTC 3 cut(s) 527, 753, 912
Tru1I TTAA 2 cut(s) 188, 991
Tru9I TTAA 2 cut(s) 188, 991
TseI GCWGC 3 cut(s) 221, 482, 866
TspDTI ATGAA 5 cut(s) 99, 381, 606, 710, 904
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 252, 790
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.