Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002531.1

Orthogroup ID

OG0007525

Physical Location & Seq

Genomic Coordinates Reverse (-)

136498 .. 140766

Gene Structure 4269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgccagccaaatctaaagatgtagatccaggaacccagactgtgttgcaatcaagtatgcaaccttggtggcgtggagcgggaaatagttcgtcttttggtgaaagtgttgtagcatcgtctttgggggaacacggtaaccgttttgtgatgaatggcgctatgcagtcacaagctgatgctggagctaacttcaaaaaagatgtgcaggctacaataggatcacagtctgatgggaatagtggacatgaaaaccaacaaatgaaaagcacttcctctgcagtggttgctaaattgggtgaacatcttgatgcgaattcacaaatggaacttgttggtcactcaattgttttgacatcatatccatattcagatccacaatacagtgcgatgttgactcattatcggccacaagctatggtgccccctcaattctatggcttgcatcatggtagaatgcccttgccccttgaaatggaagaggagcctgtttatgtaaatgccaagcaataccatggtattttgagacgaagacagtcacgtgctaaagctgagcttgaaaggaagcttataaaagttaggaagccatatcttcatgagtctcgtcaccagcatgcgttgaggagagcaaggggttgtggaggccgtttccttaatacgaagaagcaagatgatagtgatgcaaattcctcatcagaaaaaaccattaatttggatgcaaacttttcacccaaatctgccaaatctggttttgagtgctttcctaatgatagcaatggcaatttcgtttcctccaatgtccagcaagaaggatcaggttcatggttcaggacactcaataaccacacactctccaacggtaatggcaatggccatgtcccgtcatcaacgtatcatacaacatttcatgacggcaaggaaggtgttttccttggtgttgctgaaggtgtgcagtctccagcttggaaaaacacttcttgtgcaatgtctgtcaggcaattcattcttggctttggttactttgtaattattgggacgataccacaggagataggtgatggattccatgctgtcttcagtcatgaaccacttccactcaccccctgttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

370

Amino Acids

40.55

Weight (kDa)

8.22

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	162 - 217	1.5e-26	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01120 FvH4_7g01120 FvH4_7g01120
malus_domestica	MD02G1309800.v1.1 MD07G1011300.v1.1
prunus_persica	Prupe.2G014500_v2.0.a1
pyrus_communis	pycom07g00940
rosa_chinensis	RchiOBHm_Chr1g0316121 RchiOBHm_Chr1g0316201
rosa_laevigata	RLG00000030693
rosa_multiflora	Rmu_sc0002531.1_g000027 Rmu_sc0005919.1_g000009 Rmu_sc0005919.1_g000010
rosa_roxburghii	Rroxscaffold_4G00331120
rosa_rugosa	Rorug01G0009200 Rorug01G0009300 Rorug01G0009300 Rorug01G0009400 Rorug01G0009500 Rorug01G0009500
rosa_samantha	Rh1AG019200 Rh1BG014200 Rh1CG016800 Rh1DG013800
rosa_wichuraiana	Rw1G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	4 cut(s)	20, 229, 368, 820
AcoI	YGGCCR	2 cut(s)	407, 871
AcsI	RAATTY	2 cut(s)	316, 685
AcuI	CTGAAG	2 cut(s)	963, 1060
AcvI	CACGTG	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	3 cut(s)	196, 473, 560
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	176, 188, 416, 551, 556, 568, 962
AluI	AGCT	7 cut(s)	176, 188, 416, 551, 556, 568, 962
Alw26I	GTCTC	3 cut(s)	520, 606, 960
AlwI	GGATC	4 cut(s)	20, 229, 368, 820
AoxI	GGCC	3 cut(s)	407, 643, 871
ApoI	RAATTY	2 cut(s)	316, 685
AseI	ATTAAT	1 cut(s)	708
Asp700I	GAANNNNTTC	2 cut(s)	88, 1089
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	6 cut(s)	113, 311, 599, 720, 1067, 1090
BaeGI	GKGCMC	1 cut(s)	426
BalI	TGGCCA	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	538, 1066
BccI	CCATC	2 cut(s)	227, 1052
BceAI	ACGGC	2 cut(s)	630, 928
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	520, 606, 960
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	34, 423, 486
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	6 cut(s)	125, 169, 301, 454, 670, 706
BpiI	GAAGAC	2 cut(s)	538, 1066
BpmI	CTGGAG	2 cut(s)	204, 942
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	65, 514, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse3DI	GCAATG	3 cut(s)	781, 874, 990
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	65, 514, 931
BseGI	GGATG	1 cut(s)	721
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	3 cut(s)	781, 874, 990
BseMII	CTCAG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	497, 637
BseSI	GKGCMC	1 cut(s)	426
BsgI	GTGCAG	2 cut(s)	227, 971
BshFI	GGCC	3 cut(s)	409, 645, 873
BshNI	GGYRCC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	863, 1048
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	3 cut(s)	520, 606, 960
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	863, 1048
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	409, 645, 873
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	25, 221, 373, 812
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	409, 645, 873
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	3 cut(s)	595, 907, 1081
BspLI	GGNNCC	3 cut(s)	34, 423, 486
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	4 cut(s)	20, 229, 368, 820
BspT107I	GGYRCC	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	781, 874, 990
BssECI	CCNNGG	3 cut(s)	65, 514, 931
BssMI	GATC	4 cut(s)	25, 221, 373, 812
BssT1I	CCWWGG	3 cut(s)	65, 514, 931
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	7 cut(s)	43, 137, 143, 228, 386, 537, 860
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	4 cut(s)	6, 210, 443, 615
BstDEI	CTNAG	1 cut(s)	552
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	721
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	28, 224, 376, 815
BstMAI	GTCTC	3 cut(s)	520, 606, 960
BstMBI	GATC	4 cut(s)	25, 221, 373, 812
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	426
BstV2I	GAAGAC	2 cut(s)	538, 1066
BstX2I	RGATCY	2 cut(s)	25, 373
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	2 cut(s)	25, 373
BsuRI	GGCC	3 cut(s)	409, 645, 873
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 391
Cac8I	GCNNGC	4 cut(s)	6, 210, 443, 615
CciI	TCATGA	3 cut(s)	595, 907, 1081
CfoI	GCGC	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	4 cut(s)	27, 223, 375, 814
DpnII	GATC	4 cut(s)	25, 221, 373, 812
EaeI	YGGCCR	2 cut(s)	407, 871
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	3 cut(s)	65, 514, 931
Eco57I	CTGAAG	2 cut(s)	963, 1060
Eco72I	CACGTG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	65, 514, 931
ErhI	CCWWGG	3 cut(s)	65, 514, 931
Esp3I	CGTCTC	1 cut(s)	520
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	863, 1048
FauI	CCCGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	204, 942
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	409, 645, 873
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	3 cut(s)	397, 599, 1062
HphI	GGTGA	6 cut(s)	113, 311, 599, 720, 1067, 1090
Hpy166II	GTNNAC	3 cut(s)	245, 302, 396
Hpy188I	TCNGA	3 cut(s)	232, 373, 697
Hpy188III	TCNNGA	5 cut(s)	308, 596, 829, 908, 1082
Hpy8I	GTNNAC	3 cut(s)	245, 302, 396
HpyAV	CCTTC	3 cut(s)	803, 914, 938
HpyCH4III	ACNGT	7 cut(s)	43, 137, 143, 228, 386, 537, 860
HpyCH4IV	ACGT	2 cut(s)	541, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	541, 890
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	25, 221, 373, 812
LmnI	GCTCC	3 cut(s)	77, 185, 484
LweI	GCATC	6 cut(s)	125, 169, 301, 454, 670, 706
MaeII	ACGT	2 cut(s)	541, 890
MaeIII	GTNAC	6 cut(s)	137, 168, 338, 537, 605, 1016
MalI	GATC	4 cut(s)	27, 223, 375, 814
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	25, 221, 373, 812
MboII	GAAGA	5 cut(s)	491, 543, 584, 673, 1066
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	25, 373
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 998, 1026
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	2 cut(s)	391, 608
MmeI	TCCRAC	1 cut(s)	879
MnlI	CCTC	7 cut(s)	286, 438, 475, 615, 635, 700, 802
Mox20I	TGGCCA	1 cut(s)	873
MroXI	GAANNNNTTC	2 cut(s)	88, 1089
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	654, 708
MslI	CAYNNNNRTG	2 cut(s)	309, 612
Msp20I	TGGCCA	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	4 cut(s)	25, 221, 373, 812
NlaIV	GGNNCC	3 cut(s)	34, 423, 486
NmuCI	GTSAC	4 cut(s)	168, 338, 537, 605
NspI	RCATGY	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	617
PagI	TCATGA	3 cut(s)	595, 907, 1081
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	2 cut(s)	88, 1089
PfeI	GAWTC	1 cut(s)	1062
PfoI	TCCNGGA	1 cut(s)	28
PleI	GAGTC	2 cut(s)	391, 607
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	2 cut(s)	391, 607
Ppu21I	YACGTR	1 cut(s)	542
PshBI	ATTAAT	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	542
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	34, 423, 486
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	25, 373
RseI	CAYNNNNRTG	2 cut(s)	309, 612
SaqAI	TTAA	2 cut(s)	654, 708
Sau3AI	GATC	4 cut(s)	25, 221, 373, 812
SchI	GAGTC	2 cut(s)	391, 608
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	6 cut(s)	125, 169, 301, 454, 670, 706
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	309, 612
SphI	GCATGC	1 cut(s)	617
Sse9I	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 998, 1026
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	65, 514, 931
TaaI	ACNGT	7 cut(s)	43, 137, 143, 228, 386, 537, 860
TaiI	ACGT	2 cut(s)	544, 893
TasI	AATT	9 cut(s)	293, 316, 345, 431, 685, 709, 781, 998, 1026
TfiI	GAWTC	1 cut(s)	1062
Tru1I	TTAA	2 cut(s)	654, 708
Tru9I	TTAA	2 cut(s)	654, 708
TscAI	CASTG	2 cut(s)	288, 391
TseFI	GTSAC	4 cut(s)	168, 338, 537, 605
Tsp45I	GTSAC	4 cut(s)	168, 338, 537, 605
TspDTI	ATGAA	8 cut(s)	167, 264, 278, 584, 810, 896, 991, 1098
TspRI	CASTG	2 cut(s)	288, 391
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	2 cut(s)	316, 685
XceI	RCATGY	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	88, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.