Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

33050 .. 33457

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggcggagcacttggcatcgatcttcggcacagagaaggacagggttaactgccctttctacttcaagatcggcgcctgccgacatggcgaccgctgctctcgcctccacaccaagcccagcatcagccccacccttctcctctccaacatgtaccagcgccccgatatgctcaccaaccccggcgtcgacccccagggccaggccctcgacccccgcaagatccaagacaacttcgaggtcccccaattctcccctctttacctctttgatttcaaccccaatttcttcaatttgtttttcactctaacggattttaaatgttttcccctgggcccttcggttttaaatgcccagtttgcaggccagtttagcttgaggtcgagcgtacttggggttgaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

6.81

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 38	7e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	3 cut(s)	5, 94, 217
AclWI	GGATC	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	75, 186
AfaI	GTAC	2 cut(s)	155, 390
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	67, 277, 292
AjnI	CCWGG	3 cut(s)	195, 201, 330
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	4 cut(s)	199, 204, 334, 364
ApaI	GGGCCC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	77, 162
AspS9I	GGNCC	5 cut(s)	199, 205, 241, 334, 335
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	197, 203, 332
BcnI	CCSGG	1 cut(s)	183
BfoI	RGCGCY	2 cut(s)	78, 163
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	4 cut(s)	183, 197, 203, 332
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	5 cut(s)	199, 205, 241, 334, 335
BmiI	GGNNCC	3 cut(s)	76, 243, 336
BmrFI	CCNGG	4 cut(s)	183, 197, 203, 332
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	26, 132
BmuI	ACTGGG	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	75, 186
BsaJI	CCNNGG	5 cut(s)	181, 195, 196, 330, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	355, 367
BseBI	CCWGG	3 cut(s)	197, 203, 332
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	5 cut(s)	181, 195, 196, 330, 331
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	355, 367
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	201, 206, 336, 366
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	201, 206, 336, 366
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	12, 338
Bsp143I	GATC	3 cut(s)	21, 69, 222
BspACI	CCGC	3 cut(s)	5, 94, 217
BspANI	GGCC	4 cut(s)	201, 206, 336, 366
BspDI	ATCGAT	1 cut(s)	20
BspLI	GGNNCC	3 cut(s)	76, 243, 336
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	355, 367
BssECI	CCNNGG	5 cut(s)	181, 195, 196, 330, 331
BssMI	GATC	3 cut(s)	21, 69, 222
BssNI	GRCGYC	2 cut(s)	75, 186
Bst2UI	CCWGG	3 cut(s)	197, 203, 332
BstACI	GRCGYC	2 cut(s)	75, 186
BstC8I	GCNNGC	2 cut(s)	79, 364
BstH2I	RGCGCY	2 cut(s)	78, 163
BstHHI	GCGC	2 cut(s)	77, 162
BstKTI	GATC	3 cut(s)	24, 72, 225
BstMBI	GATC	3 cut(s)	21, 69, 222
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 96, 102, 359, 372
BstNI	CCWGG	3 cut(s)	197, 203, 332
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	4 cut(s)	181, 195, 201, 330
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	4 cut(s)	201, 206, 336, 366
BsuTUI	ATCGAT	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	79, 364
CfoI	GCGC	2 cut(s)	77, 162
Cfr13I	GGNCC	5 cut(s)	199, 205, 241, 334, 335
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	154, 389
CviAII	CATG	2 cut(s)	86, 151
CviJI	RGCY	7 cut(s)	118, 129, 201, 206, 336, 366, 375
CviKI_1	RGCY	7 cut(s)	118, 129, 201, 206, 336, 366, 375
CviQI	GTAC	2 cut(s)	154, 389
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	3 cut(s)	23, 71, 224
DpnII	GATC	3 cut(s)	21, 69, 222
DraI	TTTAAA	2 cut(s)	319, 348
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	241
EcoO109I	RGGNCCY	3 cut(s)	205, 241, 335
EcoRII	CCWGG	3 cut(s)	195, 201, 330
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
FaeI	CATG	2 cut(s)	89, 154
FaiI	YATR	4 cut(s)	87, 152, 170, 406
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	85, 150
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	2 cut(s)	76, 161
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	2 cut(s)	78, 163
HaeIII	GGCC	4 cut(s)	201, 206, 336, 366
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	77, 162
Hin1I	GRCGYC	2 cut(s)	75, 186
Hin1II	CATG	2 cut(s)	89, 154
Hin6I	GCGC	2 cut(s)	75, 160
HinP1I	GCGC	2 cut(s)	75, 160
HincII	GTYRAC	2 cut(s)	49, 190
HindII	GTYRAC	2 cut(s)	49, 190
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	49, 190
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	49, 190
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	31, 146, 348
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 96, 102, 359, 372
Hsp92I	GRCGYC	2 cut(s)	75, 186
Hsp92II	CATG	2 cut(s)	89, 154
HspAI	GCGC	2 cut(s)	75, 160
KasI	GGCGCC	1 cut(s)	74
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	21, 69, 222
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	26, 132
MalI	GATC	3 cut(s)	23, 71, 224
MboI	GATC	3 cut(s)	21, 69, 222
MboII	GAAGA	2 cut(s)	16, 280
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	12, 338
MluCI	AATT	3 cut(s)	248, 283, 292
Mly113I	GGCGCC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	116, 152, 218, 232, 267, 275, 372, 394
MseI	TTAA	3 cut(s)	48, 318, 347
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	4 cut(s)	183, 197, 203, 332
MvaI	CCWGG	3 cut(s)	197, 203, 332
MwoI	GCNNNNNNNGC	5 cut(s)	87, 96, 102, 359, 372
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	21, 69, 222
NlaIII	CATG	2 cut(s)	89, 154
NlaIV	GGNNCC	3 cut(s)	76, 243, 336
NspI	RCATGY	1 cut(s)	154
PasI	CCCWGGG	2 cut(s)	196, 331
PciI	ACATGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	78
PpuMI	RGGWCCY	1 cut(s)	241
PscI	ACATGT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	3 cut(s)	195, 201, 330
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	3 cut(s)	195, 201, 330
PspN4I	GGNNCC	3 cut(s)	76, 243, 336
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	5 cut(s)	199, 205, 241, 334, 335
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	155, 390
RsaNI	GTAC	2 cut(s)	154, 389
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	48, 318, 347
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	3 cut(s)	21, 69, 222
Sau96I	GGNCC	5 cut(s)	199, 205, 241, 334, 335
ScrFI	CCNGG	4 cut(s)	183, 197, 203, 332
SduI	GDGCHC	2 cut(s)	12, 338
SetI	ASST	4 cut(s)	243, 267, 377, 383
SfaNI	GCATC	2 cut(s)	26, 132
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	3 cut(s)	248, 283, 292
SsiI	CCGC	3 cut(s)	5, 94, 217
SspDI	GGCGCC	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	181, 195, 201, 330
TaqI	TCGA	5 cut(s)	20, 189, 210, 237, 383
TasI	AATT	3 cut(s)	248, 283, 292
Tru1I	TTAA	3 cut(s)	48, 318, 347
Tru9I	TTAA	3 cut(s)	48, 318, 347
TseI	GCWGC	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	241
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.