Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002556.1

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

75766 .. 78108

Gene Structure 2343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgagaggtgaaggagctattgcagtattggacgctgccgctggaggttggttagatagaaacaggcttgtggtggtctcaagggaggtaaaaactttagaccatatgtcatacattgtgctctcagaggatttaaatttcttggaggatgaaagcacaaagatatttgcacgtaaagtggctgatcattatagtgcaaggacaaatcaaactctggaagaacgagaagctagtccgatcatccatttaaaaaagcttaacaactggattaagagtgtactaattcagctctatgctcgccgaggagatgctgttcttgatcttgcatgcggaaagggaggtgatctcatcaaatgggacaaggccaaaattgggtactatgttggcattgatattgctgaaggctctatttctttttctttgctaggtttaagtaccttctttaggtcttataatttgggcattatggtcggaatggtgaagaaaatgtgggtggtgtgtgtggtggttttggtcttgaactttggggatcctttggttgataatggcaaaataaaccagcttcagtccttggcaagagctgattacttgccttatgggatcgacttcggagggcatattattccaaacttcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

7.75

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	49 - 138	4.9e-35	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AciI	CCGC	2 cut(s)	39, 330
AclWI	GGATC	3 cut(s)	524, 537, 608
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	3 cut(s)	420, 548, 616
AfaI	GTAC	3 cut(s)	279, 377, 436
AfiI	CCNNNNNNNGG	2 cut(s)	372, 444
AgsI	TTSAA	1 cut(s)	520
AhdI	GACNNNNNGTC	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	6 cut(s)	17, 230, 256, 289, 562, 581
AluI	AGCT	6 cut(s)	17, 230, 256, 289, 562, 581
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	524, 537, 608
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	20, 353, 490
BamHI	GGATCC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	231, 425
BisI	GCNGC	2 cut(s)	36, 39
BlsI	GCNGC	2 cut(s)	37, 40
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	301, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 444
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	301, 570
BseGI	GGATG	2 cut(s)	154, 240
BseLI	CCNNNNNNNGG	2 cut(s)	372, 444
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	372, 444
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BspACI	CCGC	2 cut(s)	39, 330
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	524, 537, 608
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	301, 570
BssMI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BssT1I	CCWWGG	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	298, 328
BstDEI	CTNAG	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	154, 240
BstKTI	GATC	6 cut(s)	187, 240, 322, 346, 532, 603
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BstNSI	RCATGY	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	154, 240
Cac8I	GCNNGC	2 cut(s)	298, 328
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	278, 376, 435
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	3 cut(s)	278, 376, 435
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	6 cut(s)	186, 239, 321, 345, 531, 602
DpnII	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
DraI	TTTAAA	2 cut(s)	135, 249
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	82
Eco57I	CTGAAG	3 cut(s)	420, 548, 616
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	36, 39
FokI	GGATG	2 cut(s)	161, 227
Fsp4HI	GCNGC	2 cut(s)	36, 39
FspBI	CTAG	2 cut(s)	231, 425
GluI	GCNGC	2 cut(s)	36, 39
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	365
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	254
HphI	GGTGA	3 cut(s)	20, 353, 490
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	5 cut(s)	127, 237, 473, 611, 635
Hpy188III	TCNNGA	3 cut(s)	215, 317, 517
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	5, 395, 448
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	23, 170, 197, 326
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	5 cut(s)	27, 49, 200, 250, 572
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	231, 425
MaeII	ACGT	1 cut(s)	172
MalI	GATC	6 cut(s)	186, 239, 321, 345, 531, 602
MboI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
MboII	GAAGA	2 cut(s)	230, 493
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	4 cut(s)	136, 282, 369, 454
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	38, 79, 121, 139, 296, 332, 605
MseI	TTAA	5 cut(s)	134, 248, 258, 270, 431
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	37, 40
Ppu21I	YACGTR	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	3 cut(s)	279, 377, 436
RsaNI	GTAC	3 cut(s)	278, 376, 435
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	134, 248, 258, 270, 431
SatI	GCNGC	2 cut(s)	36, 39
Sau3AI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	298
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	4 cut(s)	136, 282, 369, 454
SsiI	CCGC	2 cut(s)	39, 330
SspMI	CTAG	2 cut(s)	231, 425
StyI	CCWWGG	1 cut(s)	570
SwaI	ATTTAAAT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	603
TasI	AATT	4 cut(s)	136, 282, 369, 454
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	5 cut(s)	134, 248, 258, 270, 431
Tru9I	TTAA	5 cut(s)	134, 248, 258, 270, 431
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	330
XspI	CTAG	2 cut(s)	231, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.