Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002761.1

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Reverse (-)

59233 .. 67100

Gene Structure 7868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

atggcgaacggaacggattccgacgagttcgtggtgcggtctcgggtccggccggggctgaagcgcgaattgaccttcgcattggctcaggcggaggtctcctgttcgttgggccggacccgggccaggaaggcccagaatgagctgccggtgaatgtgaaccctaagagattgaagaaggaggcgaaaagcgagccgcagaaggacgacgaggaggagacaccggcgagtggtggcgagaatgtgaaggttgttgaggatttggtggaggctataagcgaagaagatgcgaagagcgatgtggtggatctaatgagcgacgacgagcctagaagccatgtggcggagtcaaaggtcaccgaagacgaattgaagaacggtgttgtagagatggctatggataatgagcaaaacgttgggtctgttggtaatgaagatgaggctaagcaggagcaattgaagatggaggagccggaaaagcccgattcgattggtaatggtgaaaaggtggaaccggaaaagcccaattcgattgaaaatggtgaaaaggtggaagcagaagtgattgaaaagccgctgaggaggtacactcggtcggcatcgaggcggaagagccaagtagctgagcctaagctgacagagaaggtctgcgaagacgaaataaagaatggtgcagtggatatggctattgataccggctgcggtggtgattccgtgaatgaagatgaacctaagcaggaggaacagcctttggtgaaactggaaatcctcaatttgattgaaaagggtgatacggttgaaggtgaggtgagtgaaacgccgcagaggcggtacactcggtcagcattgaagcttaaaagccaagtggctgagtctatcttgaaggtcagtgaagatgaaatgaagaatggtgtagtggatatggctattgatgatgaacccaataccggtagtgttggtgattctgtggctgaagatgagcctaggcaggaggaattgaagaagagtgaatctgaacagcctttggtgaaactagaaatcctcgatttgattgaaaagggtgataaggtggaatgtgaggcgaatgaaaagccgcagaggaggttcactcggtcaacattgaacacagagaatgaagccctagacttcaattcggtttcccagaaaagcacaccagctgaggttgagacgaaaatgcggaagactgtgaaaaagtttagactgttagagcttcttgaaactggtattcttgaggggcagcgggtgacttaccttaaaggatcaaagggaagaaaaactgcagagaaagggcttacaggagtgattactggttctgctataatgtgtcactgtgagcgatgcaatggaactgatggtgtttcaccagctatttttgagttgcatgctgaaagcgcaaataaacgtcctcctgagtacatatatcttgagaacaggaagacccttcgggatgtcctaactgcatgcaattcttcattggaaaccttggaagaagctgtccggctcgctgttggttgctcatctataaagacgtgtaccatctgcctcaattgcaaaggatctatttgcaaagatgatactagatcagcaatgcttctttgtcgctcctgcttggacttgaaagagacccaagctaagttatctgtagctgtgaaaccttctgaagttgcaaacgattgttctgaattaccaaagccggtttcagttgcaaactgtcctgacaccgttccagagtgtcctgacgttgtcctagagtgccctaacgccatttcaaggtgtcatgatactgtttcaaagtgtctcggtaccatttcaaattgccctgattcttctcctaagtgtcctgatactgtgctgaagagtaggtcgtcagcaagtaagagtcgaggaagagtaaccagaaaggataccgggatgcacaagttggtttttgaggataatttcttaccggatggaactgaagtagtttatgtttcgggtggacagagacgggctgtcggctataaaaaggggtctggcatcatgtgtagttgctgcaatacagaggtcagtccctcgcagtttgaagcccatgctggctgttcatcacgtcgcaaaccctaccacaacattttcatatctaatggggtatctcttcacgagttggcattaaagctttcaaaaaagcggaggttgtctaccgaggacagtgatgacctttgcttcatctgcagaaaaggaggaaaggtcatatgctgtgatagttgcccaagggtttttcatgcagggtgcctttctctaccaactgtccctaatggtacttggtactgtaaacattgccagactatgttcgatagagacatagatgcagagcgtaatgtcaatgctgttgcagctggaagggttgcaggagtcgatcctataaaacaaataaccaaccgatgcattcgtattgtcacagcttgcgatgaaaagttcggtggatgtgcactgtgcagaggccatgagttcaaaaacgagggttttggtcctgggacagttattttatgcgatcagtgtgaaagggaatttcatgtcggctgtttgaaggaaaaaggaattgtagatttgaaggaagttccaaaagagaagtggttctgtcatccagattgtctcagggttcattcagctttgcagaagttggtagttcatgggcaacagaagcttccagagtccctcctgaatgttgtaaggaagaaaaagaatgaaaaaggtccagcaaaggggggtcttgatataaaatggagggtgcttagtgggaaaatgtctaatgatgatgaaagtttacagttgctttccaaggctcttgccatatttcatgatcaatttgctcccattgttgataaggaatcaggcctcgacttcattagggaaatgctttatggaggggccataaagactcaagattttgctgggatgtactgtgctatagttacactcaacgaatcggtcgtgtcagctgctatgtttcgtatctatgggacggatgtggcagagcttcctctagtggcaacaagtgctgattgccaaggacagggttactttcagaccttattttcatgtattgagaggcttcttgcatttctaaacgtgaaaattcttctgctgcctgctgctgataaggcagcatccatatggacaaaaaaatttggttttcagaatctaaaccaaagtgagatacacgagtacaggaaacgttacccaatactgattttccatgggacatcagtgctgcagaagtcagtccccaagcgcagagtacctggttcacaggagagtaaggcgaaggcgaaggttgaatcatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1114

Amino Acids

122.84

Weight (kDa)

5.87

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	440 - 495	1.1e-08	Tify domain binding domain
TDBD	PF16135	676 - 721	7.9e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	737 - 780	5.2e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	740 - 779	1.1e-06	PHD-finger
IDM1_C	PF23209	955 - 1093	4.5e-51	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1823
AccB1I	GGYRCC	2 cut(s)	1823, 2286
AccI	GTMKAC	1 cut(s)	2195
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	2 cut(s)	414, 3232
AclWI	GGATC	4 cut(s)	315, 1288, 1585, 2408
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	2564, 3132, 3182
AcuI	CTGAAG	5 cut(s)	80, 993, 1701, 1895, 1998
AfiI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2759, 3070
AflIII	ACRYGT	1 cut(s)	1550
AgeI	ACCGGT	1 cut(s)	947
AhdI	GACNNNNNGTC	1 cut(s)	2012
AjiI	CACGTC	2 cut(s)	1551, 2108
AjnI	CCWGG	3 cut(s)	125, 2527, 3298
AjuI	GAANNNNNNNTTGG	2 cut(s)	1702, 1734
Alw21I	GWGCWC	1 cut(s)	2488
Alw26I	GTCTC	9 cut(s)	45, 103, 212, 1181, 1637, 1823, 1999, 2349, 2654
Alw44I	GTGCAC	1 cut(s)	2484
AlwI	GGATC	4 cut(s)	315, 1288, 1585, 2408
Ama87I	CYCGRG	2 cut(s)	42, 120
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2497, 2890, 2925
ApaLI	GTGCAC	1 cut(s)	2484
ApoI	RAATTY	3 cut(s)	2564, 3132, 3182
AsiGI	ACCGGT	1 cut(s)	947
Asp700I	GAANNNNTTC	2 cut(s)	16, 2630
Asp718I	GGTACC	1 cut(s)	1823
AspA2I	CCTAGG	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	66, 1415, 3291
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2525, 2750, 2925
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1930
AvaI	CYCGRG	2 cut(s)	42, 120
AvaII	GGWCC	4 cut(s)	46, 117, 2525, 2750
AvrII	CCTAGG	1 cut(s)	983
BaeGI	GKGCMC	2 cut(s)	1778, 2488
BaeI	ACNNNNGTAYC	2 cut(s)	3206, 3239
BanI	GGYRCC	2 cut(s)	1823, 2286
BauI	CACGAG	2 cut(s)	2156, 3218
BbsI	GAAGAC	4 cut(s)	369, 660, 1208, 1463
Bbv12I	GWGCWC	1 cut(s)	2488
BbvCI	CCTCAGC	2 cut(s)	578, 1179
BccI	CCATC	5 cut(s)	385, 457, 1367, 1565, 1964
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	127, 2529, 3300
BciVI	GTATCC	1 cut(s)	1918
BclI	TGATCA	1 cut(s)	2857
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1930
BcoDI	GTCTC	9 cut(s)	45, 103, 212, 1181, 1637, 1823, 1999, 2349, 2654
BfaI	CTAG	7 cut(s)	330, 984, 1034, 1142, 1599, 1769, 3041
BfmI	CTRYAG	5 cut(s)	1299, 1662, 2227, 2964, 3269
BfuI	GTATCC	1 cut(s)	1918
BglI	GCCNNNNNGGC	2 cut(s)	131, 826
BlnI	CCTAGG	1 cut(s)	983
BlpI	GCTNAGC	2 cut(s)	444, 624
Bme1390I	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2529, 3300
Bme18I	GGWCC	4 cut(s)	46, 117, 2525, 2750
BmeRI	GACNNNNNGTC	1 cut(s)	2012
BmeT110I	CYCGRG	2 cut(s)	42, 120
BmgBI	CACGTC	2 cut(s)	1551, 2108
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2525, 2750, 2925
BmiI	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2288, 2926
BmrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2529, 3300
BmsI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2353, 2429, 3173
BpiI	GAAGAC	4 cut(s)	369, 660, 1208, 1463
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 1093, 1125
Bpu10I	CCTNAGC	5 cut(s)	87, 578, 630, 732, 1179
Bpu1102I	GCTNAGC	2 cut(s)	444, 624
BpuEI	CTTGAG	3 cut(s)	1271, 1466, 2922
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1930
BsaI	GGTCTC	3 cut(s)	45, 103, 1637
BsaWI	WCCGGW	3 cut(s)	514, 947, 1966
BsaXI	ACNNNNNCTCC	2 cut(s)	2229, 2259
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2759, 3070
Bse118I	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
Bse1I	ACTGG	3 cut(s)	765, 1246, 1333
Bse3DI	GCAATG	3 cut(s)	1369, 1614, 2332
BseBI	CCWGG	3 cut(s)	127, 2529, 3300
BseGI	GGATG	8 cut(s)	1474, 1938, 1975, 2486, 2638, 2958, 3028, 3164
BseLI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2759, 3070
BseMI	GCAATG	3 cut(s)	1369, 1614, 2332
BseMII	CTCAG	7 cut(s)	101, 569, 615, 861, 1170, 1422, 2665
BseNI	ACTGG	3 cut(s)	765, 1246, 1333
BseRI	GAGGAG	5 cut(s)	227, 230, 482, 595, 1114
BseSI	GKGCMC	2 cut(s)	1778, 2488
BseX3I	CGGCCG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	2948
BsgI	GTGCAG	2 cut(s)	693, 2512
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	3 cut(s)	53, 596, 2988
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2499, 2892, 2927
BshNI	GGYRCC	2 cut(s)	1823, 2286
BshTI	ACCGGT	1 cut(s)	947
BsiEI	CGRYCG	3 cut(s)	53, 596, 2988
BsiHKAI	GWGCWC	1 cut(s)	2488
BsiHKCI	CYCGRG	2 cut(s)	42, 120
BslFI	GGGAC	7 cut(s)	2055, 2291, 2545, 2695, 3031, 3266, 3271
BslI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2759, 3070
BsmAI	GTCTC	9 cut(s)	45, 103, 212, 1181, 1637, 1823, 1999, 2349, 2654
BsmBI	CGTCTC	2 cut(s)	1181, 1999
BsmFI	GGGAC	7 cut(s)	2055, 2291, 2545, 2695, 3031, 3266, 3271
BsmI	GAATGC	1 cut(s)	2442
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2499, 2892, 2927
Bso31I	GGTCTC	3 cut(s)	45, 103, 1637
BsoBI	CYCGRG	2 cut(s)	42, 120
Bsp1286I	GDGCHC	2 cut(s)	1778, 2488
Bsp143I	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
Bsp1720I	GCTNAGC	2 cut(s)	444, 624
Bsp19I	CCATGG	1 cut(s)	3253
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2499, 2892, 2927
BspCNI	CTCAG	7 cut(s)	100, 570, 616, 862, 1171, 1423, 2664
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1798, 2854
BspLI	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2288, 2926
BspMAI	CTGCAG	3 cut(s)	1303, 2231, 3273
BspPI	GGATC	4 cut(s)	315, 1288, 1585, 2408
BspQI	GCTCTTC	2 cut(s)	287, 605
BspT107I	GGYRCC	2 cut(s)	1823, 2286
BspTNI	GGTCTC	3 cut(s)	45, 103, 1637
BsrDI	GCAATG	3 cut(s)	1369, 1614, 2332
BsrFI	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
BsrI	ACTGG	3 cut(s)	765, 1246, 1333
BssAI	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
BssMI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
BssSI	CACGAG	2 cut(s)	2156, 3218
BssT1I	CCWWGG	6 cut(s)	983, 1503, 2267, 2835, 3064, 3253
Bst2BI	CACGAG	2 cut(s)	2156, 3218
Bst2UI	CCWGG	3 cut(s)	127, 2529, 3300
Bst6I	CTCTTC	6 cut(s)	287, 605, 998, 1871, 1903, 2157
BstAPI	GCANNNNNTGC	1 cut(s)	3053
BstC8I	GCNNGC	7 cut(s)	194, 1404, 1483, 1524, 2095, 2461, 3147
BstDSI	CCRYGG	1 cut(s)	3253
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	8 cut(s)	1474, 1938, 1975, 2486, 2638, 2958, 3028, 3164
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	3 cut(s)	66, 1415, 3291
BstKTI	GATC	7 cut(s)	310, 1283, 1580, 1604, 2416, 2551, 2860
BstMAI	GTCTC	9 cut(s)	45, 103, 212, 1181, 1637, 1823, 1999, 2349, 2654
BstMBI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
BstMCI	CGRYCG	3 cut(s)	53, 596, 2988
BstNI	CCWGG	3 cut(s)	127, 2529, 3300
BstNSI	RCATGY	2 cut(s)	1406, 1485
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	7 cut(s)	52, 119, 120, 125, 1928, 2527, 3298
BstSFI	CTRYAG	5 cut(s)	1299, 1662, 2227, 2964, 3269
BstSLI	GKGCMC	2 cut(s)	1778, 2488
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	4 cut(s)	369, 660, 1208, 1463
BstX2I	RGATCY	2 cut(s)	307, 1577
BstYI	RGATCY	2 cut(s)	307, 1577
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1918
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2499, 2892, 2927
BtgI	CCRYGG	1 cut(s)	3253
BtgZI	GCGATG	3 cut(s)	312, 1372, 2478
BtrI	CACGTC	2 cut(s)	1551, 2108
BtsCI	GGATG	8 cut(s)	1474, 1938, 1975, 2486, 2638, 2958, 3028, 3164
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	7 cut(s)	681, 895, 1348, 2212, 2486, 2558, 3270
Cac8I	GCNNGC	7 cut(s)	194, 1404, 1483, 1524, 2095, 2461, 3147
CciI	TCATGA	2 cut(s)	1798, 2854
CfoI	GCGC	3 cut(s)	66, 1415, 3291
Cfr10I	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2525, 2750, 2925
Cfr9I	CCCGGG	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	3298
CspAI	ACCGGT	1 cut(s)	947
DpnI	GATC	7 cut(s)	309, 1282, 1579, 1603, 2415, 2550, 2859
DpnII	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
DriI	GACNNNNNGTC	1 cut(s)	2012
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	6 cut(s)	287, 605, 998, 1871, 1903, 2157
Eam1105I	GACNNNNNGTC	1 cut(s)	2012
EarI	CTCTTC	6 cut(s)	287, 605, 998, 1871, 1903, 2157
EciI	GGCGGA	3 cut(s)	107, 359, 622
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	6 cut(s)	983, 1503, 2267, 2835, 3064, 3253
Eco147I	AGGCCT	1 cut(s)	2892
Eco31I	GGTCTC	3 cut(s)	45, 103, 1637
Eco47I	GGWCC	4 cut(s)	46, 117, 2525, 2750
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	5 cut(s)	80, 993, 1701, 1895, 1998
Eco88I	CYCGRG	2 cut(s)	42, 120
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	125, 2527, 3298
EcoT14I	CCWWGG	6 cut(s)	983, 1503, 2267, 2835, 3064, 3253
EcoT22I	ATGCAT	1 cut(s)	2444
ErhI	CCWWGG	6 cut(s)	983, 1503, 2267, 2835, 3064, 3253
Esp3I	CGTCTC	2 cut(s)	1181, 1999
FaqI	GGGAC	7 cut(s)	2055, 2291, 2545, 2695, 3031, 3266, 3271
FauI	CCCGC	1 cut(s)	1254
FauNDI	CATATG	2 cut(s)	2249, 3170
FbaI	TGATCA	1 cut(s)	2857
FblI	GTMKAC	1 cut(s)	2195
FokI	GGATG	8 cut(s)	1481, 1945, 1982, 2493, 2625, 2965, 3035, 3151
FspBI	CTAG	7 cut(s)	330, 984, 1034, 1142, 1599, 1769, 3041
GlaI	GCGC	3 cut(s)	65, 1414, 3290
GsaI	CCCAGC	1 cut(s)	2952
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2499, 2892, 2927
HhaI	GCGC	3 cut(s)	66, 1415, 3291
Hin6I	GCGC	3 cut(s)	64, 1413, 3289
HinP1I	GCGC	3 cut(s)	64, 1413, 3289
HincII	GTYRAC	1 cut(s)	1116
HindII	GTYRAC	1 cut(s)	1116
HindIII	AAGCTT	3 cut(s)	851, 2171, 2699
Hpy188I	TCNGA	6 cut(s)	22, 1015, 1681, 1702, 3084, 3195
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2112
HpyCH4IV	ACGT	7 cut(s)	414, 1423, 1550, 1761, 2107, 3126, 3232
HpySE526I	ACGT	7 cut(s)	414, 1423, 1550, 1761, 2107, 3126, 3232
HspAI	GCGC	3 cut(s)	64, 1413, 3289
KpnI	GGTACC	1 cut(s)	1827
Ksp22I	TGATCA	1 cut(s)	2857
Kzo9I	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
LguI	GCTCTTC	2 cut(s)	287, 605
LmnI	GCTCC	4 cut(s)	451, 469, 1628, 2872
LweI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2353, 2429, 3173
MabI	ACCWGGT	1 cut(s)	3298
MaeI	CTAG	7 cut(s)	330, 984, 1034, 1142, 1599, 1769, 3041
MaeII	ACGT	7 cut(s)	414, 1423, 1550, 1761, 2107, 3126, 3232
MaeIII	GTNAC	8 cut(s)	355, 1264, 1346, 1912, 2452, 2968, 3074, 3233
MalI	GATC	7 cut(s)	309, 1282, 1579, 1603, 2415, 2550, 2859
MboI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
MfeI	CAATTG	2 cut(s)	455, 1567
MflI	RGATCY	2 cut(s)	307, 1577
MhlI	GDGCHC	2 cut(s)	1778, 2488
MlyI	GAGTC	6 cut(s)	356, 881, 1909, 2418, 2717, 2929
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2444
MroXI	GAANNNNTTC	2 cut(s)	16, 2630
MseI	TTAA	3 cut(s)	855, 1275, 2168
MslI	CAYNNNNRTG	1 cut(s)	3169
MspA1I	CMGCKG	5 cut(s)	577, 1178, 1261, 2393, 2996
MspR9I	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2529, 3300
MunI	CAATTG	2 cut(s)	455, 1567
Mva1269I	GAATGC	1 cut(s)	2442
MvaI	CCWGG	3 cut(s)	127, 2529, 3300
MvnI	CGCG	1 cut(s)	66
NciI	CCSGG	4 cut(s)	54, 121, 122, 1930
NcoI	CCATGG	1 cut(s)	3253
NdeI	CATATG	2 cut(s)	2249, 3170
NdeII	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
NlaIV	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2288, 2926
NmuCI	GTSAC	4 cut(s)	355, 1264, 1346, 2452
NsiI	ATGCAT	1 cut(s)	2444
NspI	RCATGY	2 cut(s)	1406, 1485
PaeI	GCATGC	2 cut(s)	1406, 1485
PagI	TCATGA	2 cut(s)	1798, 2854
PceI	AGGCCT	1 cut(s)	2892
PciSI	GCTCTTC	2 cut(s)	287, 605
PcsI	WCGNNNNNNNCGW	1 cut(s)	2985
PctI	GAATGC	1 cut(s)	2442
PdmI	GAANNNNTTC	2 cut(s)	16, 2630
PflFI	GACNNNGTC	1 cut(s)	1763
PinAI	ACCGGT	1 cut(s)	947
PleI	GAGTC	6 cut(s)	355, 880, 1908, 2417, 2716, 2929
PpsI	GAGTC	6 cut(s)	355, 880, 1908, 2417, 2716, 2929
Psp1406I	AACGTT	2 cut(s)	414, 3232
Psp6I	CCWGG	3 cut(s)	125, 2527, 3298
PspEI	GGTNACC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	2948
PspGI	CCWGG	3 cut(s)	125, 2527, 3298
PspN4I	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2288, 2926
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2525, 2750, 2925
PstI	CTGCAG	3 cut(s)	1303, 2231, 3273
PsuI	RGATCY	2 cut(s)	307, 1577
PsyI	GACNNNGTC	1 cut(s)	1763
PvuII	CAGCTG	3 cut(s)	1178, 2393, 2996
RseI	CAYNNNNRTG	1 cut(s)	3169
SapI	GCTCTTC	2 cut(s)	287, 605
SaqAI	TTAA	3 cut(s)	855, 1275, 2168
Sau3AI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2413, 2548, 2857
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2525, 2750, 2925
SchI	GAGTC	6 cut(s)	356, 881, 1909, 2418, 2717, 2929
ScrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2529, 3300
SduI	GDGCHC	2 cut(s)	1778, 2488
SexAI	ACCWGGT	1 cut(s)	3298
SfaNI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2353, 2429, 3173
SfcI	CTRYAG	5 cut(s)	1299, 1662, 2227, 2964, 3269
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SgrAI	CRCCGGYG	1 cut(s)	223
SinI	GGWCC	4 cut(s)	46, 117, 2525, 2750
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	3169
SmlI	CTYRAG	3 cut(s)	1250, 1445, 2937
SmoI	CTYRAG	3 cut(s)	1250, 1445, 2937
SphI	GCATGC	2 cut(s)	1406, 1485
SseBI	AGGCCT	1 cut(s)	2892
SspMI	CTAG	7 cut(s)	330, 984, 1034, 1142, 1599, 1769, 3041
StuI	AGGCCT	1 cut(s)	2892
StyD4I	CCNGG	7 cut(s)	52, 119, 120, 125, 1928, 2527, 3298
StyI	CCWWGG	6 cut(s)	983, 1503, 2267, 2835, 3064, 3253
TaiI	ACGT	7 cut(s)	417, 1426, 1553, 1764, 2110, 3129, 3235
TaqI	TCGA	8 cut(s)	488, 530, 602, 1044, 1903, 2349, 2412, 2895
TaqII	GACCGA	4 cut(s)	582, 828, 1101, 2974
TatI	WGTACW	3 cut(s)	1434, 2955, 3222
TauI	GCSGC	4 cut(s)	199, 577, 823, 1096
Tru1I	TTAA	3 cut(s)	855, 1275, 2168
Tru9I	TTAA	3 cut(s)	855, 1275, 2168
TscAI	CASTG	7 cut(s)	681, 895, 1355, 2212, 2493, 2558, 3270
TseFI	GTSAC	4 cut(s)	355, 1264, 1346, 2452
Tsp45I	GTSAC	4 cut(s)	355, 1264, 1346, 2452
TspGWI	ACGGA	4 cut(s)	24, 29, 703, 3035
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	7 cut(s)	681, 895, 1355, 2212, 2493, 2558, 3270
Tth111I	GACNNNGTC	1 cut(s)	1763
VneI	GTGCAC	1 cut(s)	2484
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2525, 2750
XapI	RAATTY	3 cut(s)	2564, 3132, 3182
XceI	RCATGY	2 cut(s)	1406, 1485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2625
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	2195
XmnI	GAANNNNTTC	2 cut(s)	16, 2630
XspI	CTAG	7 cut(s)	330, 984, 1034, 1142, 1599, 1769, 3041
Zsp2I	ATGCAT	1 cut(s)	2444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.