Rmu_sc0003070.1_g000010

Poly(A)-specific ribonuclease PARN-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003070.1
OG0009492
Physical Location & Seq
Forward (+)
53600 .. 54544
945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 945 bp
atggcttcagcttcgacctttctctcacacccaaaccctcacacaaacgacgccgtattctcttcttcacgaagtcggttccaatccttcagctgcttcgcctctcgatcaaacttctatggctccaaattcacatccaaaccgatttccttgtccacctccggaacccgacccgtccgacccaaacccgctagttcttcggcctcggaaccgcaccaaacgttcgatgttttgattatcggagctggaataatcgggttgaccatagcccggcagttcctgatcgggtcggacctatccgttgccgtgattgacaaggctgtcccctgctctggtgccaccggcgccggtaattttttttttttttcctccttagaaaaagagaatgctaagctatctaacaatcacctattagctccagcccttgacgagtacactaacatatccaatcccttctccgacattccccaggaatcaatcaatgaggatatcagaatctggagaaataatatgagaaaaatcagctgtgataatttggtattcttatggggatttagaagtgggttgaccgctggaatgctgaagagcatgttgcacaagtcacatgatgttttctctgaagactttgatgttcggttcgtagataagagttgtgccattgttgttttctggcaacctggtttatctggaactttccttgatgttgtgagtaacgaagccatcatctgtggatccttgagggagatggtctcagagggcctaagagcaacgagttatagtacttacaagagagtctgtaagttgggtttatgggaggcagatttagcagagtccttggacaaagctttagaagatccagactacagtatggaagctgattcaacaacaaacggcagagaaattctttggtctactgactctatgattaattttgatgacctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0043167 GO:0043169
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

314

Amino Acids

34.53

Weight (kDa)

5.29

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 76 - 121 2.4e-08 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 2 cut(s) 335, 344
AccI GTMKAC 1 cut(s) 911
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 3 cut(s) 189, 212, 570
AclI AACGTT 1 cut(s) 221
AclWI GGATC 3 cut(s) 726, 739, 848
AcsI RAATTY 2 cut(s) 128, 900
AcuI CTGAAG 3 cut(s) 73, 602, 639
AcyI GRCGYC 2 cut(s) 51, 345
AfaI GTAC 2 cut(s) 434, 781
AfiI CCNNNNNNNGG 2 cut(s) 270, 332
AgsI TTSAA 1 cut(s) 882
AjnI CCWGG 2 cut(s) 468, 676
AluBI AGCT 8 cut(s) 11, 93, 245, 394, 416, 525, 845, 875
AluI AGCT 8 cut(s) 11, 93, 245, 394, 416, 525, 845, 875
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 726, 739, 848
AlwNI CAGNNNCTG 2 cut(s) 280, 498
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 2 cut(s) 201, 757
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 128, 900
AseI ATTAAT 1 cut(s) 927
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 292, 757
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 731
BanI GGYRCC 2 cut(s) 335, 344
BbsI GAAGAC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 728, 739
BceAI ACGGC 3 cut(s) 38, 290, 907
BciT130I CCWGG 2 cut(s) 470, 678
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 862
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 3 cut(s) 271, 470, 678
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 292, 757
BmiI GGNNCC 7 cut(s) 80, 124, 166, 210, 337, 346, 733
BmrFI CCNGG 3 cut(s) 271, 470, 678
BpiI GAAGAC 1 cut(s) 627
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 2 cut(s) 402, 520
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 757
BpuMI CCSGG 1 cut(s) 271
BsaHI GRCGYC 2 cut(s) 51, 345
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 3 cut(s) 204, 468, 834
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 332
Bse118I RCCGGY 2 cut(s) 341, 347
BseAI TCCGGA 1 cut(s) 161
BseBI CCWGG 2 cut(s) 470, 678
BseDI CCNNGG 3 cut(s) 204, 468, 834
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 270, 332
BseMII CTCAG 1 cut(s) 765
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 203, 759
BshNI GGYRCC 2 cut(s) 335, 344
BsiSI CCGG 4 cut(s) 162, 271, 342, 348
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 270, 332
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 2 cut(s) 391, 582
BsnI GGCC 2 cut(s) 203, 759
Bso31I GGTCTC 1 cut(s) 754
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 4 cut(s) 107, 282, 731, 853
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 3 cut(s) 189, 212, 570
BspANI GGCC 2 cut(s) 203, 759
BspCNI CTCAG 1 cut(s) 764
BspEI TCCGGA 1 cut(s) 161
BspLI GGNNCC 7 cut(s) 80, 124, 166, 210, 337, 346, 733
BspPI GGATC 3 cut(s) 726, 739, 848
BspQI GCTCTTC 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 335, 344
BspTNI GGTCTC 1 cut(s) 754
BsrFI RCCGGY 2 cut(s) 341, 347
BssAI RCCGGY 2 cut(s) 341, 347
BssECI CCNNGG 3 cut(s) 204, 468, 834
BssMI GATC 4 cut(s) 107, 282, 731, 853
BssNI GRCGYC 2 cut(s) 51, 345
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 470, 678
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 2 cut(s) 67, 578
BstACI GRCGYC 2 cut(s) 51, 345
BstDEI CTNAG 4 cut(s) 373, 390, 751, 761
BstF5I GGATG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 4 cut(s) 110, 285, 734, 856
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 4 cut(s) 107, 282, 731, 853
BstMWI GCNNNNNNNGC 2 cut(s) 344, 824
BstNI CCWGG 2 cut(s) 470, 678
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 3 cut(s) 269, 468, 676
BstSFI CTRYAG 1 cut(s) 862
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 731, 853
BstYI RGATCY 2 cut(s) 731, 853
BsuRI GGCC 2 cut(s) 203, 759
BtsCI GGATG 1 cut(s) 134
CaiI CAGNNNCTG 2 cut(s) 280, 498
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 2 cut(s) 341, 347
Cfr13I GGNCC 2 cut(s) 292, 757
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 676
Csp6I GTAC 2 cut(s) 433, 780
CviAII CATG 2 cut(s) 589, 605
CviQI GTAC 2 cut(s) 433, 780
DdeI CTNAG 4 cut(s) 373, 390, 751, 761
DinI GGCGCC 1 cut(s) 346
DpnI GATC 4 cut(s) 109, 284, 733, 855
DpnII GATC 4 cut(s) 107, 282, 731, 853
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 67, 578
EarI CTCTTC 2 cut(s) 67, 578
Eco130I CCWWGG 1 cut(s) 834
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 3 cut(s) 73, 602, 639
EcoO109I RGGNCCY 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 468, 676
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 2 cut(s) 592, 608
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 588, 604
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 911
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 2 cut(s) 402, 520
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 2 cut(s) 203, 759
HapII CCGG 4 cut(s) 162, 271, 342, 348
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 2 cut(s) 51, 345
Hin1II CATG 2 cut(s) 592, 608
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 2 cut(s) 261, 567
HindII GTYRAC 2 cut(s) 261, 567
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 6 cut(s) 473, 495, 792, 830, 878, 917
HpaII CCGG 4 cut(s) 162, 271, 342, 348
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 5 cut(s) 156, 261, 435, 567, 912
Hpy188I TCNGA 8 cut(s) 179, 208, 242, 292, 460, 494, 619, 754
Hpy188III TCNNGA 7 cut(s) 69, 105, 162, 280, 499, 687, 857
Hpy8I GTNNAC 5 cut(s) 156, 261, 435, 567, 912
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 97, 463
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 824
HpyF3I CTNAG 4 cut(s) 373, 390, 751, 761
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 2 cut(s) 51, 345
Hsp92II CATG 2 cut(s) 592, 608
HspAI GCGC 1 cut(s) 345
KasI GGCGCC 1 cut(s) 344
Kpn2I TCCGGA 1 cut(s) 161
Kzo9I GATC 4 cut(s) 107, 282, 731, 853
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 3 cut(s) 128, 242, 421
Lsp1109I GCAGC 1 cut(s) 80
MabI ACCWGGT 1 cut(s) 676
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 600, 710
MalI GATC 4 cut(s) 109, 284, 733, 855
MboI GATC 4 cut(s) 107, 282, 731, 853
MboII GAAGA 6 cut(s) 54, 57, 189, 595, 632, 863
MflI RGATCY 2 cut(s) 731, 853
MluCI AATT 5 cut(s) 128, 352, 532, 900, 928
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 3 cut(s) 801, 839, 911
MmeI TCCRAC 3 cut(s) 202, 270, 483
MnlI CCTC 9 cut(s) 48, 112, 169, 214, 379, 478, 732, 748, 808
MroI TCCGGA 1 cut(s) 161
MseI TTAA 1 cut(s) 927
MspA1I CMGCKG 3 cut(s) 93, 525, 572
MspI CCGG 4 cut(s) 162, 271, 342, 348
MspR9I CCNGG 3 cut(s) 271, 470, 678
Mva1269I GAATGC 2 cut(s) 391, 582
MvaI CCWGG 2 cut(s) 470, 678
MwoI GCNNNNNNNGC 2 cut(s) 344, 824
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 1 cut(s) 271
NdeII GATC 4 cut(s) 107, 282, 731, 853
NlaIII CATG 2 cut(s) 592, 608
NlaIV GGNNCC 7 cut(s) 80, 124, 166, 210, 337, 346, 733
NmuCI GTSAC 1 cut(s) 600
NspI RCATGY 1 cut(s) 592
PciSI GCTCTTC 1 cut(s) 578
PctI GAATGC 2 cut(s) 391, 582
PfeI GAWTC 3 cut(s) 473, 495, 878
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 3 cut(s) 800, 838, 911
PluTI GGCGCC 1 cut(s) 348
PpsI GAGTC 3 cut(s) 800, 838, 911
PshBI ATTAAT 1 cut(s) 927
Psp1406I AACGTT 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 468, 676
PspGI CCWGG 2 cut(s) 468, 676
PspN4I GGNNCC 7 cut(s) 80, 124, 166, 210, 337, 346, 733
PspPI GGNCC 2 cut(s) 292, 757
PstNI CAGNNNCTG 2 cut(s) 280, 498
PsuI RGATCY 2 cut(s) 731, 853
PvuII CAGCTG 2 cut(s) 93, 525
RsaI GTAC 2 cut(s) 434, 781
RsaNI GTAC 2 cut(s) 433, 780
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 927
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 4 cut(s) 107, 282, 731, 853
Sau96I GGNCC 2 cut(s) 292, 757
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 3 cut(s) 801, 839, 911
ScrFI CCNGG 3 cut(s) 271, 470, 678
SexAI ACCWGGT 1 cut(s) 676
SfcI CTRYAG 1 cut(s) 862
SfoI GGCGCC 1 cut(s) 346
SgrAI CRCCGGYG 1 cut(s) 341
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 5 cut(s) 128, 352, 532, 900, 928
SsiI CCGC 3 cut(s) 189, 212, 570
SspDI GGCGCC 1 cut(s) 344
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 269, 468, 676
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 14, 106, 225
TasI AATT 5 cut(s) 128, 352, 532, 900, 928
TatI WGTACW 2 cut(s) 432, 779
TfiI GAWTC 3 cut(s) 473, 495, 878
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 600
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 292
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 2 cut(s) 128, 900
XceI RCATGY 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 911
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.