Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003093.1

Orthogroup ID

OG0011921

Physical Location & Seq

Genomic Coordinates Forward (+)

44103 .. 47224

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

atgtccacaatatcctcaagaatggaaattataatcagctcttcactgttcacagaacaaaaccatggaaaaggaacccgaaaggaagctttcaataaagaagatgcattcatcagaacaactatagacacgacaggtgagctccgacgccgaacagtcccatcccggcgacgaaacagcacgccgtcacaacaagctgcttccgcgtcggcggatacgaccacgccaccatacccttcctctctctttcaatgttctgcttcgtttctcaaacttataccacgtaatccgactcgtcgtttaacagagaccaaaatatacgacatgtcgttcctttcgcaggagcttttctcaaacttataccacggaatcccgctcgtcgttcgacggaccctaaaaactacgacatgtcgtttcctccgcagcctcaatcgccacattactcaaagcctgcccaaaatctacgacatgtcgttcctttcgcaggagcttttctcaaacttatacgacgtaatccggctcgtcgttcgacggaccctaaaaaatacgacatgtcgtttcctccgcaggtaccagattgagaactatggtgaagaagaagaaggggggaaacgaaaatgcaaagagtcctatatgcctagtatgcgcgtagcttcagcctcaatcgccacattactcaaagcctgcaaaacccagttccgtcttgaacaaatccacgcccagatcatcctcaaaggtctagagcaagaccacttcctcatcacccaattcatctgcctctccaacgctctctcctccctctcttactccaccgccgtcttccgccgcgtcaacaaccccagcagccatctctggaactcactactcaaaggccactgcgaaagatcgagtttttccgccaccgtctctctcttcattcgtatgaagagggaggagggcgtggcggatgagtacacgtacccgtcggttgtgaaggcctgtgccggcgagggaagggtccgggagggaagggcggttcatgggtcggcggtgaggtgtggggttgatgggaatgtgtttgtggggactagcttggttgacttgtatggcaaatgtagggaggttgtgtgtgcgcggaaggtgtttgatggaatgtgtgagagaaatgtggtgtcttggactgctatggttgttgggtatgccggtgttggggatatggtgggggcgagtaaggtgttcggtgaaatgccggagaggaatgctgtgtcgtggaatgtggttattagtgggtttgttaggttgggtgatttggggaatgcgaggagggtgtttgaggagatgccggggaaagatgtggtttcttttactactatgattgatggatatgcaaagtccggggatatggcttcggccaggtttttgtttgagcaggctccggttaaggatattgttatgtggtcggcgttgatatcggggtatgcacaaaatggttttcccaatcaggctgtgaaaatatttcttgagatgagtagtaagaatgtggaacctgatgagtttataatggtgagcttgatgtcagcttgctcccaagtgggttgcttggaattggctgaatgggttgattcgtatctgagcagtagctcaatcgatattcgacagcctcatgttcttgcggctctgattgacatgaatgcaaagtgtgggaatatggaaagagcaacgagtttgtttgaaaacatgccaaaacgggacctgatttcgtattgttcaatgatacaagggttgtctattcacggccgagggaatcaagctgttgcccttttcaataggatgttaagtgaaggtttggctccagatgaggtagcttttactgtgatcctgacagcttgtagccgttccgagcttgttgaggagggtcggcatttctttgaattaatgagacataaatacagtatggttcccactcctgatcactatgcatgcatggttgatcttcttagccggtcaggatggttagaagaagcttatgagcttctacaatcaatgcctgtggaacctcatgctggtgcttggggtgcactacttggtgcatgtaagctacattgcaatgttgagtttggggagttggttgctaatcgactctttgtgcttgaaccaaaaaatgctggtagttatgtgctcctctccgacatctatgctgcattccaccgttggttggatgtttctgttgtgaggaacaaaatgcaggagagaggccttaaaaagatacctggtatcagttcaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

755

Amino Acids

84.55

Weight (kDa)

8.8

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	280 - 328	1.3e-06	PPR repeat family
PPR	PF01535	415 - 444	6.7e-06	PPR repeat
PPR_2	PF13041	474 - 521	1.1e-08	PPR repeat family
PPR	PF01535	477 - 507	4.8e-07	PPR repeat
PPR_2	PF13041	577 - 624	1.5e-09	PPR repeat family
E_motif	PF20431	694 - 755	7.9e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37570 AT5G37570
fragaria_vesca	FvH4_6g19660
malus_domestica	MD02G1238600.v1.1 MD07G1078100.v1.1
prunus_persica	Prupe.1G026700_v2.0.a1 Prupe.8G050400_v2.0.a1
pyrus_communis	pycom02g20390 pycom07g06180
rosa_chinensis	RchiOBHm_Chr3g0475001
rosa_laevigata	RLG00000023872
rosa_multiflora	Rmu_sc0003093.1_g000009
rosa_roxburghii	Rroxscaffold_6G00406640
rosa_rugosa	Rorug03G0146000
rosa_samantha	Rh3AG195600 Rh3BG225800 Rh3CG220600 Rh3DG221100
rosa_wichuraiana	Rw3G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	32, 1538
Acc36I	ACCTGC	1 cut(s)	558
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	570
AccBSI	CCGCTC	1 cut(s)	376
AccII	CGCG	4 cut(s)	206, 648, 828, 1114
AclWI	GGATC	1 cut(s)	1849
AcoI	YGGCCR	2 cut(s)	1389, 1774
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	572, 953, 959
AfiI	CCNNNNNNNGG	5 cut(s)	340, 484, 1188, 2042, 2194
AflIII	ACRYGT	5 cut(s)	324, 407, 468, 551, 954
AgsI	TTSAA	9 cut(s)	94, 251, 707, 1712, 1749, 1804, 1910, 2132, 2262
AjnI	CCWGG	2 cut(s)	1391, 2248
AloI	GAACNNNNNNTCC	2 cut(s)	999, 1031
Alw21I	GWGCWC	3 cut(s)	144, 2059, 2160
Alw26I	GTCTC	3 cut(s)	302, 910, 1912
Alw44I	GTGCAC	1 cut(s)	2055
AlwI	GGATC	1 cut(s)	1849
AoxI	GGCC	5 cut(s)	871, 975, 1389, 1774, 2233
ApaLI	GTGCAC	1 cut(s)	2055
ApeKI	GCWGC	4 cut(s)	197, 423, 843, 2177
AseI	ATTAAT	1 cut(s)	1913
Asp718I	GGTACC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	648, 1114
AspS9I	GGNCC	4 cut(s)	390, 534, 997, 1729
AsuC2I	CCSGG	4 cut(s)	166, 1001, 1323, 1375
AsuHPI	GGTGA	7 cut(s)	149, 602, 754, 1042, 1232, 1295, 1555
AvaII	GGWCC	4 cut(s)	390, 534, 997, 1729
BaeGI	GKGCMC	1 cut(s)	2059
BaeI	ACNNNNGTAYC	2 cut(s)	1745, 1778
BanI	GGYRCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	811
Bbv12I	GWGCWC	3 cut(s)	144, 2059, 2160
BbvI	GCAGC	4 cut(s)	184, 435, 855, 2164
BccI	CCATC	6 cut(s)	169, 855, 1040, 1121, 1352, 1983
BceAI	ACGGC	4 cut(s)	169, 800, 1789, 1857
BcgI	CGANNNNNNTGC	2 cut(s)	2156, 2190
BciT130I	CCWGG	2 cut(s)	1393, 2250
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	1948
BcnI	CCSGG	4 cut(s)	166, 1001, 1323, 1375
BcoDI	GTCTC	3 cut(s)	302, 910, 1912
BfaI	CTAG	3 cut(s)	639, 740, 1068
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	6 cut(s)	198, 424, 826, 844, 1653, 2178
BlsI	GCNGC	6 cut(s)	199, 425, 827, 845, 1654, 2179
Bme1390I	CCNGG	6 cut(s)	166, 1001, 1323, 1375, 1393, 2250
Bme18I	GGWCC	4 cut(s)	390, 534, 997, 1729
BmgT120I	GGNCC	4 cut(s)	390, 534, 997, 1729
BmrFI	CCNGG	6 cut(s)	166, 1001, 1323, 1375, 1393, 2250
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	2 cut(s)	94, 1308
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	811
BplI	GAGNNNNNCTC	4 cut(s)	335, 367, 479, 511
BpmI	CTGGAG	1 cut(s)	1815
BpuEI	CTTGAG	1 cut(s)	1520
BpuMI	CCSGG	4 cut(s)	166, 1001, 1323, 1375
Bsa29I	ATCGAT	1 cut(s)	1626
BsaAI	YACGTR	2 cut(s)	284, 957
BsaBI	GATNNNNATC	1 cut(s)	1605
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	64, 364, 1322, 1374, 1777
BsaWI	WCCGGW	1 cut(s)	1414
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 806, 1091, 1121
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 484, 1188, 2042, 2194
Bse118I	RCCGGY	3 cut(s)	983, 1181, 1980
Bse1I	ACTGG	1 cut(s)	694
Bse3DI	GCAATG	2 cut(s)	2080, 2092
Bse8I	GATNNNNATC	1 cut(s)	1605
BseBI	CCWGG	2 cut(s)	1393, 2250
BseCI	ATCGAT	1 cut(s)	1626
BseDI	CCNNGG	5 cut(s)	64, 364, 1322, 1374, 1777
BseGI	GGATG	6 cut(s)	161, 726, 952, 1815, 1994, 2203
BseJI	GATNNNNATC	1 cut(s)	1605
BseLI	CCNNNNNNNGG	5 cut(s)	340, 484, 1188, 2042, 2194
BseMI	GCAATG	2 cut(s)	2080, 2092
BseMII	CTCAG	1 cut(s)	1601
BseNI	ACTGG	1 cut(s)	694
BseRI	GAGGAG	6 cut(s)	784, 947, 1315, 1328, 1904, 2150
BseSI	GKGCMC	1 cut(s)	2059
BseX3I	CGGCCG	1 cut(s)	1774
BseXI	GCAGC	4 cut(s)	184, 435, 855, 2164
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	4 cut(s)	206, 648, 828, 1114
Bsh1285I	CGRYCG	1 cut(s)	1777
BshFI	GGCC	5 cut(s)	873, 977, 1391, 1776, 2235
BshNI	GGYRCC	1 cut(s)	570
BshVI	ATCGAT	1 cut(s)	1626
BsiEI	CGRYCG	1 cut(s)	1777
BsiHKAI	GWGCWC	3 cut(s)	144, 2059, 2160
BslFI	GGGAC	3 cut(s)	143, 1078, 1742
BslI	CCNNNNNNNGG	5 cut(s)	340, 484, 1188, 2042, 2194
BsmAI	GTCTC	3 cut(s)	302, 910, 1912
BsmBI	CGTCTC	1 cut(s)	910
BsmFI	GGGAC	3 cut(s)	143, 1078, 1742
BsmI	GAATGC	5 cut(s)	107, 1243, 1300, 1675, 2180
BsnI	GGCC	5 cut(s)	873, 977, 1391, 1776, 2235
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	144, 2059, 2160
Bsp143I	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
Bsp19I	CCATGG	1 cut(s)	64
BspANI	GGCC	5 cut(s)	873, 977, 1391, 1776, 2235
BspCNI	CTCAG	1 cut(s)	1602
BspDI	ATCGAT	1 cut(s)	1626
BspFNI	CGCG	4 cut(s)	206, 648, 828, 1114
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	1849
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	570
BspTNI	GGTCTC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	2080, 2092
BsrFI	RCCGGY	3 cut(s)	983, 1181, 1980
BsrI	ACTGG	1 cut(s)	694
BssAI	RCCGGY	3 cut(s)	983, 1181, 1980
BssECI	CCNNGG	5 cut(s)	64, 364, 1322, 1374, 1777
BssMI	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	1393, 2250
Bst4CI	ACNGT	6 cut(s)	48, 157, 904, 1852, 1931, 2189
Bst6I	CTCTTC	3 cut(s)	46, 917, 920
BstACI	GRCGYC	1 cut(s)	148
BstBAI	YACGTR	2 cut(s)	284, 957
BstC8I	GCNNGC	7 cut(s)	182, 452, 685, 985, 1410, 1561, 1960
BstDEI	CTNAG	2 cut(s)	1610, 1976
BstDSI	CCRYGG	2 cut(s)	64, 364
BstENI	CCTNNNNNAGG	2 cut(s)	338, 482
BstF5I	GGATG	6 cut(s)	161, 726, 952, 1815, 1994, 2203
BstFNI	CGCG	4 cut(s)	206, 648, 828, 1114
BstHHI	GCGC	2 cut(s)	648, 1114
BstKTI	GATC	5 cut(s)	726, 887, 1857, 1951, 1972
BstMAI	GTCTC	3 cut(s)	302, 910, 1912
BstMBI	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
BstMCI	CGRYCG	1 cut(s)	1777
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 432, 643, 665, 2054
BstNI	CCWGG	2 cut(s)	1393, 2250
BstNSI	RCATGY	7 cut(s)	328, 411, 472, 555, 1720, 1962, 2073
BstSCI	CCNGG	6 cut(s)	164, 999, 1321, 1373, 1391, 2248
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	2059
BstUI	CGCG	4 cut(s)	206, 648, 828, 1114
BstV1I	GCAGC	4 cut(s)	184, 435, 855, 2164
BstV2I	GAAGAC	1 cut(s)	811
BstZI	CGGCCG	1 cut(s)	1774
Bsu15I	ATCGAT	1 cut(s)	1626
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	5 cut(s)	873, 977, 1391, 1776, 2235
BsuTUI	ATCGAT	1 cut(s)	1626
BtgI	CCRYGG	2 cut(s)	64, 364
BtsCI	GGATG	6 cut(s)	161, 726, 952, 1815, 1994, 2203
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	44, 874
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	7 cut(s)	182, 452, 685, 985, 1410, 1561, 1960
CfoI	GCGC	2 cut(s)	648, 1114
Cfr10I	RCCGGY	3 cut(s)	983, 1181, 1980
Cfr13I	GGNCC	4 cut(s)	390, 534, 997, 1729
ClaI	ATCGAT	1 cut(s)	1626
CseI	GACGC	3 cut(s)	156, 195, 817
CsiI	ACCWGGT	1 cut(s)	2248
Csp6I	GTAC	3 cut(s)	571, 952, 958
CspCI	CAANNNNNGTGG	2 cut(s)	2010, 2045
CviQI	GTAC	3 cut(s)	571, 952, 958
DdeI	CTNAG	2 cut(s)	1610, 1976
DpnI	GATC	5 cut(s)	725, 886, 1856, 1950, 1971
DpnII	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
EaeI	YGGCCR	2 cut(s)	1389, 1774
EagI	CGGCCG	1 cut(s)	1774
Eam1104I	CTCTTC	3 cut(s)	46, 917, 920
EarI	CTCTTC	3 cut(s)	46, 917, 920
EciI	GGCGGA	4 cut(s)	227, 812, 886, 959
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	1774
Eco130I	CCWWGG	1 cut(s)	64
Eco147I	AGGCCT	2 cut(s)	977, 2235
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	1449
Eco47I	GGWCC	4 cut(s)	390, 534, 997, 1729
Eco52I	CGGCCG	1 cut(s)	1774
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	2 cut(s)	338, 482
EcoO109I	RGGNCCY	1 cut(s)	1729
EcoRII	CCWGG	2 cut(s)	1391, 2248
EcoRV	GATATC	1 cut(s)	1449
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	3 cut(s)	109, 1960, 1964
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	910
FaqI	GGGAC	3 cut(s)	143, 1078, 1742
FauI	CCCGC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	1948
Fnu4HI	GCNGC	6 cut(s)	198, 424, 826, 844, 1653, 2178
FokI	GGATG	6 cut(s)	148, 713, 959, 1822, 2001, 2210
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	6 cut(s)	198, 424, 826, 844, 1653, 2178
FspBI	CTAG	3 cut(s)	639, 740, 1068
GlaI	GCGC	2 cut(s)	647, 1113
GluI	GCNGC	6 cut(s)	198, 424, 826, 844, 1653, 2178
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	1815
HaeIII	GGCC	5 cut(s)	873, 977, 1391, 1776, 2235
HgaI	GACGC	3 cut(s)	156, 195, 817
HhaI	GCGC	2 cut(s)	648, 1114
Hin1I	GRCGYC	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	646, 1112
HinP1I	GCGC	2 cut(s)	646, 1112
HincII	GTYRAC	2 cut(s)	832, 1078
HindII	GTYRAC	2 cut(s)	832, 1078
HindIII	AAGCTT	2 cut(s)	87, 2001
HinfI	GANTC	6 cut(s)	292, 369, 626, 1601, 1783, 2118
HphI	GGTGA	7 cut(s)	149, 602, 754, 1042, 1232, 1295, 1555
Hpy166II	GTNNAC	6 cut(s)	6, 51, 832, 954, 1078, 2057
Hpy188I	TCNGA	7 cut(s)	116, 146, 291, 1611, 1659, 1879, 2167
Hpy188III	TCNNGA	9 cut(s)	18, 704, 740, 853, 1499, 1832, 1858, 1946, 1986
Hpy8I	GTNNAC	6 cut(s)	6, 51, 832, 954, 1078, 2057
HpyAV	CCTTC	7 cut(s)	246, 596, 967, 987, 1002, 1111, 1814
HpyCH4III	ACNGT	6 cut(s)	48, 157, 904, 1852, 1931, 2189
HpyCH4IV	ACGT	3 cut(s)	283, 510, 956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 432, 643, 665, 2054
HpyF3I	CTNAG	2 cut(s)	1610, 1976
HpySE526I	ACGT	3 cut(s)	283, 510, 956
Hsp92I	GRCGYC	1 cut(s)	148
HspAI	GCGC	2 cut(s)	646, 1112
KpnI	GGTACC	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	983
KroNI	GCCGGC	1 cut(s)	985
Ksp22I	TGATCA	1 cut(s)	1948
Kzo9I	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	7 cut(s)	147, 343, 487, 1417, 1568, 1834, 2163
Lsp1109I	GCAGC	4 cut(s)	184, 435, 855, 2164
LweI	GCATC	2 cut(s)	94, 1308
MabI	ACCWGGT	1 cut(s)	2248
MaeI	CTAG	3 cut(s)	639, 740, 1068
MaeII	ACGT	3 cut(s)	283, 510, 956
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	5 cut(s)	725, 886, 1856, 1950, 1971
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
MhlI	GDGCHC	3 cut(s)	144, 2059, 2160
MluCI	AATT	5 cut(s)	27, 767, 1583, 1910, 2262
MlyI	GAGTC	3 cut(s)	286, 635, 2112
MmeI	TCCRAC	5 cut(s)	169, 314, 807, 2175, 2190
Mph1103I	ATGCAT	3 cut(s)	109, 1960, 1964
MroNI	GCCGGC	1 cut(s)	983
MseI	TTAA	5 cut(s)	302, 1419, 1814, 1913, 2238
MslI	CAYNNNNRTG	3 cut(s)	920, 2043, 2085
MspR9I	CCNGG	6 cut(s)	166, 1001, 1323, 1375, 1393, 2250
Mva1269I	GAATGC	5 cut(s)	107, 1243, 1300, 1675, 2180
MvaI	CCWGG	2 cut(s)	1393, 2250
MvnI	CGCG	4 cut(s)	206, 648, 828, 1114
MwoI	GCNNNNNNNGC	5 cut(s)	203, 432, 643, 665, 2054
NaeI	GCCGGC	1 cut(s)	985
NciI	CCSGG	4 cut(s)	166, 1001, 1323, 1375
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
NgoMIV	GCCGGC	1 cut(s)	983
NmeAIII	GCCGAG	1 cut(s)	1802
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	3 cut(s)	109, 1960, 1964
NspI	RCATGY	7 cut(s)	328, 411, 472, 555, 1720, 1962, 2073
PaeI	GCATGC	1 cut(s)	1962
PceI	AGGCCT	2 cut(s)	977, 2235
PciI	ACATGT	4 cut(s)	324, 407, 468, 551
PciSI	GCTCTTC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	5 cut(s)	107, 1243, 1300, 1675, 2180
PdiI	GCCGGC	1 cut(s)	985
PfeI	GAWTC	3 cut(s)	369, 1601, 1783
PfoI	TCCNGGA	1 cut(s)	999
PkrI	GCNGC	6 cut(s)	199, 425, 827, 845, 1654, 2179
PleI	GAGTC	3 cut(s)	286, 634, 2112
PpsI	GAGTC	3 cut(s)	286, 634, 2112
Ppu21I	YACGTR	2 cut(s)	284, 957
PpuMI	RGGWCCY	1 cut(s)	1729
PscI	ACATGT	4 cut(s)	324, 407, 468, 551
PshBI	ATTAAT	1 cut(s)	1913
PsiI	TTATAA	2 cut(s)	32, 1538
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	1729
Psp6I	CCWGG	2 cut(s)	1391, 2248
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	2 cut(s)	1391, 2248
PspPI	GGNCC	4 cut(s)	390, 534, 997, 1729
PspPPI	RGGWCCY	1 cut(s)	1729
RsaI	GTAC	3 cut(s)	572, 953, 959
RsaNI	GTAC	3 cut(s)	571, 952, 958
RseI	CAYNNNNRTG	3 cut(s)	920, 2043, 2085
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	302, 1419, 1814, 1913, 2238
SatI	GCNGC	6 cut(s)	198, 424, 826, 844, 1653, 2178
Sau3AI	GATC	5 cut(s)	723, 884, 1854, 1948, 1969
Sau96I	GGNCC	4 cut(s)	390, 534, 997, 1729
SchI	GAGTC	3 cut(s)	286, 635, 2112
ScrFI	CCNGG	6 cut(s)	166, 1001, 1323, 1375, 1393, 2250
SduI	GDGCHC	3 cut(s)	144, 2059, 2160
SexAI	ACCWGGT	1 cut(s)	2248
SfaNI	GCATC	2 cut(s)	94, 1308
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	4 cut(s)	390, 534, 997, 1729
SmiMI	CAYNNNNRTG	3 cut(s)	920, 2043, 2085
SmlI	CTYRAG	2 cut(s)	16, 1499
SmoI	CTYRAG	2 cut(s)	16, 1499
SphI	GCATGC	1 cut(s)	1962
Sse9I	AATT	5 cut(s)	27, 767, 1583, 1910, 2262
SseBI	AGGCCT	2 cut(s)	977, 2235
SspI	AATATT	1 cut(s)	1494
SspMI	CTAG	3 cut(s)	639, 740, 1068
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	2 cut(s)	977, 2235
StyD4I	CCNGG	6 cut(s)	164, 999, 1321, 1373, 1391, 2248
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	6 cut(s)	48, 157, 904, 1852, 1931, 2189
TaiI	ACGT	3 cut(s)	286, 513, 959
TaqI	TCGA	6 cut(s)	385, 529, 887, 1626, 1633, 2116
TasI	AATT	5 cut(s)	27, 767, 1583, 1910, 2262
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	2 cut(s)	828, 1655
TfiI	GAWTC	3 cut(s)	369, 1601, 1783
Tru1I	TTAA	5 cut(s)	302, 1419, 1814, 1913, 2238
Tru9I	TTAA	5 cut(s)	302, 1419, 1814, 1913, 2238
TscAI	CASTG	2 cut(s)	51, 881
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	4 cut(s)	197, 423, 843, 2177
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	6 cut(s)	100, 760, 904, 938, 1007, 1682
TspGWI	ACGGA	4 cut(s)	381, 403, 547, 689
TspRI	CASTG	2 cut(s)	51, 881
VneI	GTGCAC	1 cut(s)	2055
VpaK11BI	GGWCC	4 cut(s)	390, 534, 997, 1729
VspI	ATTAAT	1 cut(s)	1913
XagI	CCTNNNNNAGG	2 cut(s)	338, 482
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	7 cut(s)	328, 411, 472, 555, 1720, 1962, 2073
XspI	CTAG	3 cut(s)	639, 740, 1068
Zsp2I	ATGCAT	3 cut(s)	109, 1960, 1964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.