Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0010635

Physical Location & Seq

Genomic Coordinates Reverse (-)

77043 .. 78898

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgtatgacaaagttgttctatttctgtctcataattctattgactttgcgggtcgctataacaccgccctagtttgccacagatggcttttcttggcgtgtcaccctcgcttgtggctgcgagttgaacgatccattaaagatccattggagcctggcgtcttccccagcattgagacagcggttgctgccgcaagatggcttttcttggcgtgtcaccctcgcttgtggctgcgagttgaacgatccattaaagatccattggagcctggcgtcttccccagcattgagagtttgaggcagcggttaagtgcattggagttcctgtccacctgcaaattggcaaacttaactgaaaaggcagagccgggttgtcgcttgcttcatagaagtggaagactcacaatagatgggtgcgtgcttcagtgccagacaaatcccctagacttcctttcagtccccattgtgagtacggcgagtgcgcaaactctgttgtcttcatcggtgaagtgttataaggatggtgtttctgtttctctgactcaaattggaggtgccaactgccaaggctgtttcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

193

Amino Acids

21.5

Weight (kDa)

8.73

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010635)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001460.1_g000008 Rmu_sc0003441.1_g000021
rosa_roxburghii	Rroxscaffold_4G00308150 Rroxscaffold_5G00370200 Rroxscaffold_6G00400510 Rroxscaffold_7G00188210
rosa_rugosa	Rorug01G0131700.1 Rorug03G0291900 Rorug04G0439200 Rorug07G0306700
rosa_samantha	Rh1AG309500 Rh1AG424300 Rh1BG121100 Rh2CG398400 Rh3DG152800 Rh3DG152900 Rh3DG257600 Rh4AG226900 Rh4BG233000 Rh7AG422800
rosa_wichuraiana	Rw6G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AarI	CACCTGC	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	5 cut(s)	50, 66, 182, 192, 304
AclWI	GGATC	4 cut(s)	126, 137, 240, 251
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	159, 273
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	3 cut(s)	128, 242, 577
AjnI	CCWGG	2 cut(s)	154, 268
Alw26I	GTCTC	2 cut(s)	33, 170
AlwI	GGATC	4 cut(s)	126, 137, 240, 251
ApeKI	GCWGC	4 cut(s)	118, 188, 232, 301
AspLEI	GCGC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	95, 209, 517
BanI	GGYRCC	1 cut(s)	554
BbsI	GAAGAC	4 cut(s)	154, 268, 403, 489
BbvI	GCAGC	4 cut(s)	105, 175, 219, 313
BccI	CCATC	4 cut(s)	78, 192, 404, 515
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	2 cut(s)	156, 270
BcnI	CCSGG	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	33, 170
BfaI	CTAG	3 cut(s)	71, 443, 580
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	5 cut(s)	119, 189, 192, 233, 302
BlsI	GCNGC	5 cut(s)	120, 190, 193, 234, 303
Bme1390I	CCNGG	3 cut(s)	156, 270, 369
BmiI	GGNNCC	3 cut(s)	153, 267, 556
BmrFI	CCNGG	3 cut(s)	156, 270, 369
BpiI	GAAGAC	4 cut(s)	154, 268, 403, 489
BpuMI	CCSGG	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	159, 273
BsaJI	CCNNGG	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	156, 270
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	105, 175, 219, 313
BseYI	CCCAGC	2 cut(s)	167, 281
BshNI	GGYRCC	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	33, 170
BsmFI	GGGAC	1 cut(s)	443
Bsp143I	GATC	4 cut(s)	131, 142, 245, 256
BspACI	CCGC	5 cut(s)	50, 66, 182, 192, 304
BspLI	GGNNCC	3 cut(s)	153, 267, 556
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	4 cut(s)	126, 137, 240, 251
BspT107I	GGYRCC	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	4 cut(s)	131, 142, 245, 256
BssNI	GRCGYC	2 cut(s)	159, 273
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	156, 270
BstACI	GRCGYC	2 cut(s)	159, 273
BstC8I	GCNNGC	2 cut(s)	380, 419
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	4 cut(s)	134, 145, 248, 259
BstMAI	GTCTC	2 cut(s)	33, 170
BstMBI	GATC	4 cut(s)	131, 142, 245, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	156, 270
BstSCI	CCNGG	3 cut(s)	154, 268, 367
BstV1I	GCAGC	4 cut(s)	105, 175, 219, 313
BstV2I	GAAGAC	4 cut(s)	154, 268, 403, 489
BstX2I	RGATCY	2 cut(s)	142, 256
BstYI	RGATCY	2 cut(s)	142, 256
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	380, 419
CfoI	GCGC	1 cut(s)	484
CseI	GACGC	2 cut(s)	148, 262
Csp6I	GTAC	1 cut(s)	471
CviJI	RGCY	8 cut(s)	88, 118, 154, 202, 232, 268, 367, 570
CviKI_1	RGCY	8 cut(s)	88, 118, 154, 202, 232, 268, 367, 570
CviQI	GTAC	1 cut(s)	471
DpnI	GATC	4 cut(s)	133, 144, 247, 258
DpnII	GATC	4 cut(s)	131, 142, 245, 256
Eco130I	CCWWGG	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	154, 268
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
FaiI	YATR	5 cut(s)	6, 33, 60, 387, 516
FaqI	GGGAC	1 cut(s)	443
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	5 cut(s)	119, 189, 192, 233, 302
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	119, 189, 192, 233, 302
FspBI	CTAG	3 cut(s)	71, 443, 580
FspI	TGCGCA	1 cut(s)	483
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	5 cut(s)	119, 189, 192, 233, 302
GsaI	CCCAGC	2 cut(s)	171, 285
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	2 cut(s)	148, 262
HhaI	GCGC	1 cut(s)	484
Hin1I	GRCGYC	2 cut(s)	159, 273
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	2 cut(s)	399, 541
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	95, 209, 517
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	540
Hpy8I	GTNNAC	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	314, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92I	GRCGYC	2 cut(s)	159, 273
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	4 cut(s)	131, 142, 245, 256
LmnI	GCTCC	2 cut(s)	151, 265
Lsp1109I	GCAGC	4 cut(s)	105, 175, 219, 313
MaeI	CTAG	3 cut(s)	71, 443, 580
MaeIII	GTNAC	2 cut(s)	101, 215
MalI	GATC	4 cut(s)	133, 144, 247, 258
MboI	GATC	4 cut(s)	131, 142, 245, 256
MboII	GAAGA	4 cut(s)	154, 268, 408, 489
MflI	RGATCY	2 cut(s)	142, 256
MluCI	AATT	3 cut(s)	34, 338, 546
MlyI	GAGTC	2 cut(s)	393, 535
MnlI	CCTC	4 cut(s)	117, 231, 291, 545
MseI	TTAA	4 cut(s)	138, 252, 308, 350
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	182, 304
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	3 cut(s)	156, 270, 369
MvaI	CCWGG	2 cut(s)	156, 270
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	131, 142, 245, 256
NlaIV	GGNNCC	3 cut(s)	153, 267, 556
NmuCI	GTSAC	2 cut(s)	101, 215
NsbI	TGCGCA	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	120, 190, 193, 234, 303
PleI	GAGTC	2 cut(s)	393, 535
PpsI	GAGTC	2 cut(s)	393, 535
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	154, 268
PspFI	CCCAGC	2 cut(s)	167, 281
PspGI	CCWGG	2 cut(s)	154, 268
PspN4I	GGNNCC	3 cut(s)	153, 267, 556
PsuI	RGATCY	2 cut(s)	142, 256
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	138, 252, 308, 350
SatI	GCNGC	5 cut(s)	119, 189, 192, 233, 302
Sau3AI	GATC	4 cut(s)	131, 142, 245, 256
SchI	GAGTC	2 cut(s)	393, 535
ScrFI	CCNGG	3 cut(s)	156, 270, 369
SetI	ASST	2 cut(s)	335, 556
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	34, 338, 546
SsiI	CCGC	5 cut(s)	50, 66, 182, 192, 304
SspMI	CTAG	3 cut(s)	71, 443, 580
StyD4I	CCNGG	3 cut(s)	154, 268, 367
StyI	CCWWGG	1 cut(s)	565
TasI	AATT	3 cut(s)	34, 338, 546
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	4 cut(s)	138, 252, 308, 350
Tru9I	TTAA	4 cut(s)	138, 252, 308, 350
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	2 cut(s)	101, 215
TseI	GCWGC	4 cut(s)	118, 188, 232, 301
Tsp45I	GTSAC	2 cut(s)	101, 215
TspDTI	ATGAA	2 cut(s)	374, 489
TspRI	CASTG	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	3 cut(s)	71, 443, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.