Rorug03G0291900

Belongs to the eIF-2B alpha beta delta subunits family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000605
Physical Location & Seq
Reverse (-)
29846466 .. 29847947
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0291900.1

Sequence Viewer

Length: 243 bp
ATGGCTTCTCTACTCTTGTTACTGGGAGCAATCCTACAATCCCATTCTAATGATGTTCTTCTGATCGATGATGGAACGATGGATTCCAACTACGCCAATGCTGATGATCTTCGGTTTGAGCGAAAAGATGGGAATGTCTTCTCCGGTGTGTCTCCTCATGATTACATGTGGAGTTTTCCGAACCACAATGATATTGATGAAACCCAAGCCTGGAAAGTAGCCGTCTATGGCATTTGGCCTTGA

Protein Analysis

80

Amino Acids

9.01

Weight (kDa)

4.28

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 165
AjnI CCWGG 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 130
BccI CCATC 3 cut(s) 65, 73, 122
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 63, 106
BspANI GGCC 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 66
BspHI TCATGA 1 cut(s) 157
BsrI ACTGG 1 cut(s) 27
BssMI GATC 2 cut(s) 63, 106
Bst2UI CCWGG 1 cut(s) 211
BstKTI GATC 2 cut(s) 66, 109
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 63, 106
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 238
BsuTUI ATCGAT 1 cut(s) 66
CciI TCATGA 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 158, 166
CviJI RGCY 4 cut(s) 5, 209, 221, 238
CviKI_1 RGCY 4 cut(s) 5, 209, 221, 238
DpnI GATC 2 cut(s) 65, 108
DpnII GATC 2 cut(s) 63, 106
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 2 cut(s) 161, 169
FaiI YATR 3 cut(s) 159, 167, 228
FatI CATG 2 cut(s) 157, 165
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 161, 169
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 144
Hpy188I TCNGA 2 cut(s) 63, 180
Hpy188III TCNNGA 1 cut(s) 158
Hsp92II CATG 2 cut(s) 161, 169
Kzo9I GATC 2 cut(s) 63, 106
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 8, 157, 196, 223
MaeIII GTNAC 1 cut(s) 18
MalI GATC 2 cut(s) 65, 108
MboI GATC 2 cut(s) 63, 106
MboII GAAGA 3 cut(s) 50, 101, 130
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
NdeII GATC 2 cut(s) 63, 106
NlaIII CATG 2 cut(s) 161, 169
NspI RCATGY 1 cut(s) 169
PagI TCATGA 1 cut(s) 157
PciI ACATGT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 83
PscI ACATGT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 48
Sau3AI GATC 2 cut(s) 63, 106
ScrFI CCNGG 1 cut(s) 211
SgeI CNNG 8 cut(s) 28, 35, 156, 170, 178, 218, 222, 223
SmiMI CAYNNNNRTG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 209
TaqI TCGA 1 cut(s) 66
TfiI GAWTC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 213
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.