Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

59299833 .. 59300807

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCATGCTAATTTTGTTAACCCCAATTTTCAGTCGATTTCATCGGTGCTAATCAACTATACCTTACCTAAGTGTTGTAGGTATGGAAAGGTTATTGGTATAGGTTATGTGATGAATGTTTTTAATGCATTGTGTGTAAGGCTTAAGCATTACATTGAGGGTTCAAAGAACACTAGTCACTATGTAATGCAACTATGCTTCTCTGGGTTTGATAAGAAGGTACGTGACAAAGGTGGTGGCCACACTCTCTTAACAGATGAATTTTCTATTCCGAATAGAAAGTTTGTAGGGAATATGAGGCTACTTTGGGTTGATTTTCGCGTACTGAAAGCAGTTGTTGTAGAAAATTCCAATGATCTTGATGCACCTGTCAATGATGTGCTGAATGAGGTCCATTCAATTATTGGAGCTTTGACTGATGTCTTAAGGGTTGTTGGGGAGCAGTTGATTGCTACAAATCCTGTGGAGTGGGGTGTGGGTAATATTGTGAGGATTTTGCACAGTATCATGGAGGAAGATGTTTCTCTCACCATAATTGCTATGGCTGGGTTGAACTTGTCGACTGTCAATAATGATGAAGATTATGGTGACCGTCGATATGTTGCTGTAGTTGTAACAGCTGCAAGAAGCACACTGTGTCCGCTTTCCTTGCAAATCCTTCTTGAAGACATACATGATGCAGCAGCTCACACTTCTTCATTTGGTGGTGATTATGAAGGAAGAAGCGAATCTGTTGATAAAAGTTCTAAAAGCCGGAAGTTGAAGCATGATGTCATTGAAGCAGCCAATGAATTTTTTCAAGATATTGGCACTTGCCATGTACAGTTGGCAGAGCAAGCAGTAGAGCACATTCTCCATAACAAGGTTATATTAACTCTTGGGAATTCAAGATCATTATTGGAATTTCTTTATGCTGTAAAGGAGAAAAAAAGATCATTTCAGGTAATTGTTGCGGAGGGAGCTCCAAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

324

Amino Acids

36.05

Weight (kDa)

6.31

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	243 - 323	2.9e-13	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	560
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	641, 953
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	5 cut(s)	260, 346, 791, 883, 902
AdeI	CACNNNGTG	1 cut(s)	636
AfaI	GTAC	3 cut(s)	222, 324, 822
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	2 cut(s)	143, 424
AgsI	TTSAA	8 cut(s)	165, 399, 553, 665, 763, 779, 800, 888
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	4 cut(s)	410, 620, 686, 962
AluI	AGCT	4 cut(s)	410, 620, 686, 962
Alw21I	GWGCWC	2 cut(s)	849, 964
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	4 cut(s)	620, 680, 683, 782
ApoI	RAATTY	5 cut(s)	260, 346, 791, 883, 902
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	520, 599, 719
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	964
BbsI	GAAGAC	1 cut(s)	672
Bbv12I	GWGCWC	2 cut(s)	849, 964
BbvI	GCAGC	4 cut(s)	607, 692, 695, 794
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	2 cut(s)	143, 424
BisI	GCNGC	4 cut(s)	621, 681, 684, 783
BlsI	GCNGC	4 cut(s)	622, 682, 685, 784
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmsI	GCATC	2 cut(s)	352, 667
BoxI	GACNNNNGTC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseXI	GCAGC	4 cut(s)	607, 692, 695, 794
BseYI	CCCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	849, 964
BsiSI	CCGG	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	862
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	849, 964
Bsp1407I	TGTACA	1 cut(s)	820
Bsp143I	GATC	3 cut(s)	355, 890, 932
BspACI	CCGC	2 cut(s)	641, 953
BspANI	GGCC	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	321
BspTI	CTTAAG	2 cut(s)	143, 424
BsrGI	TGTACA	1 cut(s)	820
BssMI	GATC	3 cut(s)	355, 890, 932
Bst4CI	ACNGT	5 cut(s)	503, 565, 593, 636, 825
BstAFI	CTTAAG	2 cut(s)	143, 424
BstAUI	TGTACA	1 cut(s)	820
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	6, 837
BstDEI	CTNAG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	587
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	358, 893, 935
BstMBI	GATC	3 cut(s)	355, 890, 932
BstMWI	GCNNNNNNNGC	3 cut(s)	649, 836, 959
BstNSI	RCATGY	1 cut(s)	8
BstPAI	GACNNNNGTC	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	587
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	607, 692, 695, 794
BstV2I	GAAGAC	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	632
Cac8I	GCNNGC	2 cut(s)	6, 837
Cfr13I	GGNCC	1 cut(s)	391
Csp6I	GTAC	3 cut(s)	221, 323, 821
CspCI	CAANNNNNGTGG	4 cut(s)	217, 252, 444, 479
CviAII	CATG	5 cut(s)	5, 508, 674, 767, 818
CviQI	GTAC	3 cut(s)	221, 323, 821
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	357, 892, 934
DpnII	GATC	3 cut(s)	355, 890, 932
DraIII	CACNNNGTG	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	962
Eco24I	GRGCYC	1 cut(s)	964
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	962
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	962
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	883
EcoT22I	ATGCAT	2 cut(s)	6, 130
EcoT38I	GRGCYC	1 cut(s)	964
FaeI	CATG	5 cut(s)	8, 511, 677, 770, 821
FatI	CATG	5 cut(s)	4, 507, 673, 766, 817
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	4 cut(s)	621, 681, 684, 783
FriOI	GRGCYC	1 cut(s)	964
Fsp4HI	GCNGC	4 cut(s)	621, 681, 684, 783
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	4 cut(s)	621, 681, 684, 783
GsaI	CCCAGC	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	754
Hin1II	CATG	5 cut(s)	8, 511, 677, 770, 821
HincII	GTYRAC	2 cut(s)	19, 561
HindII	GTYRAC	2 cut(s)	19, 561
HinfI	GANTC	1 cut(s)	728
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	754
HphI	GGTGA	3 cut(s)	520, 599, 719
Hpy166II	GTNNAC	2 cut(s)	19, 561
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	4 cut(s)	359, 662, 800, 888
Hpy8I	GTNNAC	2 cut(s)	19, 561
Hpy99I	CGWCG	1 cut(s)	597
HpyAV	CCTTC	3 cut(s)	211, 668, 710
HpyCH4III	ACNGT	5 cut(s)	503, 565, 593, 636, 825
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	8 cut(s)	4, 128, 190, 365, 499, 623, 652, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	649, 836, 959
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	5 cut(s)	8, 511, 677, 770, 821
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	355, 890, 932
LmnI	GCTCC	4 cut(s)	407, 439, 959, 967
LpnPI	CCDG	6 cut(s)	189, 381, 474, 531, 767, 926
Lsp1109I	GCAGC	4 cut(s)	607, 692, 695, 794
LweI	GCATC	2 cut(s)	352, 667
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	4 cut(s)	176, 224, 587, 613
MalI	GATC	3 cut(s)	357, 892, 934
MboI	GATC	3 cut(s)	355, 890, 932
MboII	GAAGA	5 cut(s)	527, 590, 677, 687, 732
MhlI	GDGCHC	2 cut(s)	849, 964
MlsI	TGGCCA	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	240
MnlI	CCTC	6 cut(s)	151, 291, 382, 483, 505, 949
Mox20I	TGGCCA	1 cut(s)	240
Mph1103I	ATGCAT	2 cut(s)	6, 130
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	6 cut(s)	18, 123, 144, 251, 425, 872
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	620
MspCI	CTTAAG	2 cut(s)	143, 424
MspI	CCGG	1 cut(s)	754
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	649, 836, 959
NdeII	GATC	3 cut(s)	355, 890, 932
NlaIII	CATG	5 cut(s)	8, 511, 677, 770, 821
NmuCI	GTSAC	3 cut(s)	176, 224, 587
NsiI	ATGCAT	2 cut(s)	6, 130
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	622, 682, 685, 784
Ppu21I	YACGTR	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	964
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	545
PspPI	GGNCC	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	222, 324, 822
RsaNI	GTAC	3 cut(s)	221, 323, 821
SacI	GAGCTC	1 cut(s)	964
SalI	GTCGAC	1 cut(s)	559
SaqAI	TTAA	6 cut(s)	18, 123, 144, 251, 425, 872
SatI	GCNGC	4 cut(s)	621, 681, 684, 783
Sau3AI	GATC	3 cut(s)	355, 890, 932
Sau96I	GGNCC	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	849, 964
SfaNI	GCATC	2 cut(s)	352, 667
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	2 cut(s)	143, 424
SmoI	CTYRAG	2 cut(s)	143, 424
SpeI	ACTAGT	1 cut(s)	173
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	2 cut(s)	641, 953
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	964
TaaI	ACNGT	5 cut(s)	503, 565, 593, 636, 825
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	3 cut(s)	35, 560, 595
TatI	WGTACW	1 cut(s)	820
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	6 cut(s)	18, 123, 144, 251, 425, 872
Tru9I	TTAA	6 cut(s)	18, 123, 144, 251, 425, 872
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	3 cut(s)	176, 224, 587
TseI	GCWGC	4 cut(s)	620, 680, 683, 782
Tsp45I	GTSAC	3 cut(s)	176, 224, 587
TspDTI	ATGAA	7 cut(s)	30, 128, 273, 591, 687, 729, 804
TspRI	CASTG	1 cut(s)	639
Vha464I	CTTAAG	2 cut(s)	143, 424
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	5 cut(s)	260, 346, 791, 883, 902
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	2 cut(s)	401, 538
XmiI	GTMKAC	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	1 cut(s)	174
Zsp2I	ATGCAT	2 cut(s)	6, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.