Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

767625 .. 769103

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54446

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATAAATTGCAGCTGTATGTTGAAGTGGTACACAAAGGAACTAAGCTGCTAATTTCTTTGAATGGCTCGGGCAATTTATTGGGTAATGGTAATGGAATTTTCTATCTTGTTTTTGTGAAAAATGAGTTCTCATTTACTCAGCGCATGGAATTGGTGTTTCAGAAGGAAAAGGGCTGCATGTTTATTGGCTATGATATTACAGATGAGAAGGCTAATGTGCATATTGTTAGGGAGCATGCGAAGAAGGCTTTTGATGAAAAGTGGGTGGTAGAAATTGCAAAGAAAGTTGTCATGGATATGACAAATGCAAGGCTTTACACCACTGCCTATTCCGAAGTGATCACTGGAATTTGTAAAACCTTGCAACTTTCTAAATATGAGATTAGAAACTTAGATGGTTTATTTGATGGTGAACTTGCTAGACATTTTCCTCATATTAAGTCTGCATCAACTTCCTTGAGGTATTGTTCTTCTTCAGCCATCTCAATTGTTACTATTCATTCTGTGGCATTAGTCAAGTGTTTTACTGCTCTTGGTGTGATGGAGACTACTGAAAACACACACACTAATGAATTTGCTGAGAAAGCTAAAAGGAAGCTACTTGATATTATTTTTGGATTTGATGAAGAGAAGTTACAGAAGTTAGCTTCCAAGTACTTTGGTCCATATCAGGTTATCAAAAAAATTAGGAAAGTTGCTTACAAGTTACTGTTGCCTCCTACTGCAAAGATCCATCCAGTTTTTCATGTTTCAAGGTTGAAGAAGAAGGTTGGTTCAACAGTGATTACCTCCCCTGATTTGCCACCAATGTTTGAGAGTGAAAAAACCAAGTGGTATCCATCCAAAATCATTGATGGAGGAATTTTCAAAAAGAACAATGCTGCAGTGACAAAATGGCTTGTGCAGTGGAAGAACACCAATGAGGAAGATGCAACCTGGGAGGATCCGGAGCAGTTCATGAACAGATTTCCAGAATTTCAAACTGGAATTGCAAGTTTGATCTTTAAGCGGGGTGGAATGTTGGGGCACCCATCTAAGAGTTGTGATCGGGCCTGGCCCAAGCCCATAACAGTTAGAGATATTTTGCATTCTTATCTAGTTTGTGACTTATGCCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

374

Amino Acids

42.63

Weight (kDa)

9.28

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	211 - 257	9.7e-18	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1029
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	1 cut(s)	1012
AclWI	GGATC	3 cut(s)	727, 941, 954
AcsI	RAATTY	5 cut(s)	99, 351, 575, 864, 977
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	33, 659
AgsI	TTSAA	7 cut(s)	26, 64, 756, 763, 780, 871, 983
AjnI	CCWGG	2 cut(s)	938, 1055
AluBI	AGCT	6 cut(s)	16, 49, 590, 601, 650, 1120
AluI	AGCT	6 cut(s)	16, 49, 590, 601, 650, 1120
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	3 cut(s)	727, 941, 954
Ama87I	CYCGRG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	2 cut(s)	1053, 1058
ApeKI	GCWGC	4 cut(s)	13, 49, 177, 884
ApoI	RAATTY	5 cut(s)	99, 351, 575, 864, 977
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	665, 1053, 1059
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	1032
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	1029
BarI	GAAGNNNNNNTAC	2 cut(s)	621, 653
BbvI	GCAGC	4 cut(s)	25, 36, 164, 871
BccI	CCATC	8 cut(s)	392, 404, 491, 538, 744, 850, 851, 1042
BciT130I	CCWGG	2 cut(s)	940, 1057
BciVI	GTATCC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	423, 1100
BfmI	CTRYAG	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	4 cut(s)	14, 50, 178, 885
BlsI	GCNGC	4 cut(s)	15, 51, 179, 886
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	940, 1057
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	665, 1053, 1059
BmiI	GGNNCC	2 cut(s)	948, 1031
BmrFI	CCNGG	2 cut(s)	940, 1057
BmsI	GCATC	2 cut(s)	458, 922
BpuEI	CTTGAG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	939
BsaWI	WCCGGW	1 cut(s)	949
Bse1I	ACTGG	3 cut(s)	352, 740, 991
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	940, 1057
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	2 cut(s)	736, 842
BseMII	CTCAG	2 cut(s)	155, 573
BseNI	ACTGG	3 cut(s)	352, 740, 991
BseSI	GKGCMC	1 cut(s)	1032
BseXI	GCAGC	4 cut(s)	25, 36, 164, 871
BsgI	GTGCAG	1 cut(s)	926
BshFI	GGCC	2 cut(s)	1055, 1060
BshNI	GGYRCC	1 cut(s)	1029
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	950
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	2 cut(s)	1055, 1060
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp13I	TCCGGA	1 cut(s)	949
Bsp143I	GATC	5 cut(s)	342, 732, 946, 1002, 1048
BspACI	CCGC	1 cut(s)	1012
BspANI	GGCC	2 cut(s)	1055, 1060
BspCNI	CTCAG	2 cut(s)	154, 574
BspEI	TCCGGA	1 cut(s)	949
BspHI	TCATGA	1 cut(s)	960
BspLI	GGNNCC	2 cut(s)	948, 1031
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	3 cut(s)	727, 941, 954
BspT107I	GGYRCC	1 cut(s)	1029
BsrI	ACTGG	3 cut(s)	352, 740, 991
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	5 cut(s)	342, 732, 946, 1002, 1048
Bst2UI	CCWGG	2 cut(s)	940, 1057
Bst4CI	ACNGT	3 cut(s)	714, 784, 1075
Bst6I	CTCTTC	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	240, 1118
BstDEI	CTNAG	5 cut(s)	45, 141, 394, 582, 1038
BstF5I	GGATG	2 cut(s)	736, 842
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	5 cut(s)	345, 735, 949, 1005, 1051
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	5 cut(s)	342, 732, 946, 1002, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 587
BstNI	CCWGG	2 cut(s)	940, 1057
BstNSI	RCATGY	2 cut(s)	184, 242
BstSCI	CCNGG	2 cut(s)	938, 1055
BstSFI	CTRYAG	1 cut(s)	885
BstSLI	GKGCMC	1 cut(s)	1032
BstV1I	GCAGC	4 cut(s)	25, 36, 164, 871
BstX2I	RGATCY	2 cut(s)	732, 946
BstYI	RGATCY	2 cut(s)	732, 946
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	2 cut(s)	1055, 1060
BtsCI	GGATG	2 cut(s)	736, 842
BtsI	GCAGTG	3 cut(s)	324, 894, 914
BtsIMutI	CAGTG	5 cut(s)	324, 345, 789, 894, 914
Cac8I	GCNNGC	2 cut(s)	240, 1118
CciI	TCATGA	1 cut(s)	960
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	665, 1053, 1059
Csp6I	GTAC	2 cut(s)	32, 658
CviAII	CATG	6 cut(s)	148, 181, 239, 295, 749, 961
CviQI	GTAC	2 cut(s)	32, 658
DdeI	CTNAG	5 cut(s)	45, 141, 394, 582, 1038
DpnI	GATC	5 cut(s)	344, 734, 948, 1004, 1050
DpnII	GATC	5 cut(s)	342, 732, 946, 1002, 1048
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	938, 1055
FaeI	CATG	6 cut(s)	151, 184, 242, 298, 752, 964
FatI	CATG	6 cut(s)	147, 180, 238, 294, 748, 960
FauI	CCCGC	1 cut(s)	1005
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	14, 50, 178, 885
FokI	GGATG	2 cut(s)	723, 829
Fsp4HI	GCNGC	4 cut(s)	14, 50, 178, 885
FspBI	CTAG	2 cut(s)	423, 1100
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	4 cut(s)	14, 50, 178, 885
HaeIII	GGCC	2 cut(s)	1055, 1060
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	151, 184, 242, 298, 752, 964
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	34, 416
Hpy188I	TCNGA	2 cut(s)	165, 337
Hpy188III	TCNNGA	3 cut(s)	950, 961, 974
Hpy8I	GTNNAC	2 cut(s)	34, 416
HpyAV	CCTTC	4 cut(s)	160, 205, 241, 763
HpyCH4III	ACNGT	3 cut(s)	714, 784, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 587
HpyF3I	CTNAG	5 cut(s)	45, 141, 394, 582, 1038
Hsp92II	CATG	6 cut(s)	151, 184, 242, 298, 752, 964
HspAI	GCGC	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	342, 732, 946, 1002, 1048
LmnI	GCTCC	2 cut(s)	235, 952
Lsp1109I	GCAGC	4 cut(s)	25, 36, 164, 871
LweI	GCATC	2 cut(s)	458, 922
MaeI	CTAG	2 cut(s)	423, 1100
MaeIII	GTNAC	5 cut(s)	493, 636, 708, 889, 1106
MalI	GATC	5 cut(s)	344, 734, 948, 1004, 1050
MboI	GATC	5 cut(s)	342, 732, 946, 1002, 1048
MboII	GAAGA	8 cut(s)	256, 465, 468, 641, 775, 778, 925, 941
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	732, 946
MhlI	GDGCHC	1 cut(s)	1032
MnlI	CCTC	7 cut(s)	444, 456, 729, 802, 854, 919, 937
MroI	TCCGGA	1 cut(s)	949
MseI	TTAA	2 cut(s)	441, 1008
MslI	CAYNNNNRTG	2 cut(s)	299, 570
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	940, 1057
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	2 cut(s)	940, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	248, 587
NdeII	GATC	5 cut(s)	342, 732, 946, 1002, 1048
NlaIII	CATG	6 cut(s)	151, 184, 242, 298, 752, 964
NlaIV	GGNNCC	2 cut(s)	948, 1031
NmuCI	GTSAC	2 cut(s)	889, 1106
NspI	RCATGY	2 cut(s)	184, 242
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	960
PctI	GAATGC	1 cut(s)	1090
PkrI	GCNGC	4 cut(s)	15, 51, 179, 886
Psp6I	CCWGG	2 cut(s)	938, 1055
PspGI	CCWGG	2 cut(s)	938, 1055
PspN4I	GGNNCC	2 cut(s)	948, 1031
PspPI	GGNCC	3 cut(s)	665, 1053, 1059
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	2 cut(s)	732, 946
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	33, 659
RsaNI	GTAC	2 cut(s)	32, 658
RseI	CAYNNNNRTG	2 cut(s)	299, 570
SaqAI	TTAA	2 cut(s)	441, 1008
SatI	GCNGC	4 cut(s)	14, 50, 178, 885
Sau3AI	GATC	5 cut(s)	342, 732, 946, 1002, 1048
Sau96I	GGNCC	3 cut(s)	665, 1053, 1059
ScaI	AGTACT	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	940, 1057
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	2 cut(s)	458, 922
SfcI	CTRYAG	1 cut(s)	885
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	299, 570
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
SphI	GCATGC	1 cut(s)	242
SsiI	CCGC	1 cut(s)	1012
SspMI	CTAG	2 cut(s)	423, 1100
StyD4I	CCNGG	2 cut(s)	938, 1055
TaaI	ACNGT	3 cut(s)	714, 784, 1075
TatI	WGTACW	1 cut(s)	657
Tru1I	TTAA	2 cut(s)	441, 1008
Tru9I	TTAA	2 cut(s)	441, 1008
TscAI	CASTG	5 cut(s)	331, 352, 789, 894, 914
TseFI	GTSAC	2 cut(s)	889, 1106
TseI	GCWGC	4 cut(s)	13, 49, 177, 884
Tsp45I	GTSAC	2 cut(s)	889, 1106
TspDTI	ATGAA	8 cut(s)	17, 273, 491, 588, 642, 737, 949, 977
TspRI	CASTG	5 cut(s)	331, 352, 789, 894, 914
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	5 cut(s)	99, 351, 575, 864, 977
XceI	RCATGY	2 cut(s)	184, 242
XspI	CTAG	2 cut(s)	423, 1100
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.