Rh1DG056700

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
9137345 .. 9145291
7947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG056700.1

Sequence Viewer

Length: 516 bp
ATGCCAGACGTGCATACTCTTGTGAATGATTTCATTATCAAGCTGAAAAAGCGTAAAATTGAGGGCTCGCAGGCTACGGCGAAGCAGACTGCTGAGCTACTTCGCTCGGTGATTTCGTCGCAGCGTGTGCCCTACACGAATCAAGCCGGAGCATTGATTGATGCTGTAAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATCCTGTGGAGCTTGCTGTGGGTAATATTGTGAGGCGGGTTTTGCACATTATCAGGGAGGAGGATCTTTCTCTCACCACTGCTGCTATGGCTGGGTTGAACTTGTCAACTGTCAGTGATGATGAAGATGATGTTGACCACGACAACTATCCTGTTCTATCTGCTGCTGTAGTTGCAGCAGCTGCAAGAAGCACACTGCGTCCGCCTTCCTTGCAAACCCTTCTTGAAGACATGCCTGATGCAGCAGCTATCCCTCACACTTCTTCATCTGGGGGTGATTCTGAAGGAAAAAGCAAATGTGTGCTCTTCACTCTTTAG

Protein Analysis

171

Amino Acids

18.15

Weight (kDa)

5.14

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 235, 401
AclWI GGATC 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 501
AgsI TTSAA 2 cut(s) 298, 425
AjiI CACGTC 1 cut(s) 10
AluBI AGCT 6 cut(s) 43, 97, 187, 211, 380, 446
AluI AGCT 6 cut(s) 43, 97, 187, 211, 380, 446
Alw21I GWGCWC 1 cut(s) 504
AlwI GGATC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 3 cut(s) 121, 265, 485
BaeGI GKGCMC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 504
BceAI ACGGC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 366
BlpI GCTNAGC 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 10
BmsI GCATC 2 cut(s) 151, 427
BpiI GAAGAC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 93
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 1 cut(s) 147
Bsp1286I GDGCHC 3 cut(s) 68, 132, 504
Bsp143I GATC 1 cut(s) 262
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 2 cut(s) 235, 401
BspCNI CTCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 509
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 509
BstAPI GCANNNNNTGC 2 cut(s) 127, 380
BstC8I GCNNGC 3 cut(s) 68, 72, 213
BstDEI CTNAG 1 cut(s) 93
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 9 cut(s) 10, 49, 127, 170, 241, 287, 371, 380, 409
BstNSI RCATGY 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtrI CACGTC 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 276, 392
BtsIMutI CAGTG 3 cut(s) 276, 319, 392
Cac8I GCNNGC 3 cut(s) 68, 72, 213
CaiI CAGNNNCTG 1 cut(s) 380
CseI GACGC 1 cut(s) 386
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 1 cut(s) 430
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 1 cut(s) 433
FaiI YATR 3 cut(s) 15, 287, 431
FatI CATG 1 cut(s) 429
FauI CCCGC 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 294
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 386
Hin1II CATG 1 cut(s) 433
HincII GTYRAC 2 cut(s) 306, 334
HindII GTYRAC 2 cut(s) 306, 334
HinfI GANTC 2 cut(s) 139, 476
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 121, 265, 485
Hpy166II GTNNAC 2 cut(s) 306, 334
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 306, 334
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 414, 428, 476
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 7 cut(s) 13, 197, 244, 374, 383, 412, 440
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 49, 127, 170, 241, 287, 371, 380, 409
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 433
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 3 cut(s) 149, 181, 208
LpnPI CCDG 9 cut(s) 18, 56, 160, 216, 238, 276, 363, 447, 453
LweI GCATC 2 cut(s) 151, 427
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 335, 437, 453, 496
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 68, 132, 504
MluCI AATT 1 cut(s) 57
MnlI CCTC 5 cut(s) 55, 225, 250, 253, 462
MroXI GAANNNNTTC 1 cut(s) 29
MspA1I CMGCKG 2 cut(s) 187, 380
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 9 cut(s) 10, 49, 127, 170, 241, 287, 371, 380, 409
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 433
NspI RCATGY 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 139, 476
PspFI CCCAGC 1 cut(s) 290
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 2 cut(s) 187, 380
SapI GCTCTTC 1 cut(s) 509
Sau3AI GATC 1 cut(s) 262
SduI GDGCHC 3 cut(s) 68, 132, 504
SetI ASST 7 cut(s) 12, 45, 99, 189, 213, 382, 448
SfaNI GCATC 2 cut(s) 151, 427
SfcI CTRYAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 235, 401
SspI AATATT 1 cut(s) 226
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 57
TfiI GAWTC 2 cut(s) 139, 476
TscAI CASTG 3 cut(s) 283, 319, 399
TspDTI ATGAA 3 cut(s) 22, 336, 453
TspRI CASTG 3 cut(s) 283, 319, 399
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.