Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

25117847 .. 25119691

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG245700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCATCCCAAAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCAGTTACAAGATTATTACTCTGCTGATGATTTGGTATTCCAACGAAGACCTGCTACAGGAGTTGAGTTTAGCTCATGCTTTTATATCATATATTGGGGAGTACAAAAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

77

Amino Acids

8.33

Weight (kDa)

6.81

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	2 - 47	5.8e-12	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	2 cut(s)	111, 221
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	191, 229
AluI	AGCT	2 cut(s)	191, 229
Alw21I	GWGCWC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	93, 118
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	93, 118
Csp6I	GTAC	2 cut(s)	110, 220
CviAII	CATG	4 cut(s)	20, 28, 92, 194
CviJI	RGCY	3 cut(s)	32, 191, 229
CviKI_1	RGCY	3 cut(s)	32, 191, 229
CviQI	GTAC	2 cut(s)	110, 220
EaeI	YGGCCR	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	173
FaeI	CATG	4 cut(s)	23, 31, 95, 197
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	19, 27, 91, 193
FokI	GGATG	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	23, 31, 95, 197
HpyCH4V	TGCA	2 cut(s)	74, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	23, 31, 95, 197
LpnPI	CCDG	4 cut(s)	66, 102, 161, 182
LweI	GCATC	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	32
MluNI	TGGCCA	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	29
NlaIII	CATG	4 cut(s)	23, 31, 95, 197
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	111, 221
RsaNI	GTAC	2 cut(s)	110, 220
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	4 cut(s)	55, 171, 193, 231
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	95
TatI	WGTACW	2 cut(s)	109, 219
XagI	CCTNNNNNAGG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.