Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

54312319 .. 54330078

Gene Structure 17760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG309400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGAAGAGGGAAGCCTTGGCTCGACATTTATCTGGTTTGGCAGCTTCTTCATCAAAGCCACGGAGAATCGAGGACTTGGATGATCCCGGAGCTCCGCCGCATCAACCAACCCATTACGGCCCTGCTGCAATTGAAAGTGAAGGAAAGTGGCAGCAGAGTGGAGGCTATAATCCATCATTCATGTTCCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTAATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

78

Amino Acids

8.64

Weight (kDa)

5.44

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 101
AclWI	GGATC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	2 cut(s)	47, 95
AluI	AGCT	2 cut(s)	47, 95
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	44, 128, 154
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	56, 115, 166
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	90
BisI	GCNGC	4 cut(s)	45, 101, 129, 155
BlsI	GCNGC	4 cut(s)	46, 102, 130, 156
Bme1390I	CCNGG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	18, 62
BseDI	CCNNGG	2 cut(s)	18, 62
BseGI	GGATG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	56, 115, 166
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	90, 190
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	98, 101
BspANI	GGCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	18, 62
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	2
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	56, 115, 166
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	8 cut(s)	17, 23, 47, 61, 95, 123, 168, 193
CviKI_1	RGCY	8 cut(s)	17, 23, 47, 61, 95, 123, 168, 193
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	171, 185
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	45, 101, 129, 155
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	45, 101, 129, 155
GluI	GCNGC	4 cut(s)	45, 101, 129, 155
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	90, 190
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	90, 190
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	92, 100
LpnPI	CCDG	4 cut(s)	21, 103, 138, 203
Lsp1109I	GCAGC	3 cut(s)	56, 115, 166
LweI	GCATC	1 cut(s)	112
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	19, 42
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	3 cut(s)	3, 67, 158
MspI	CCGG	2 cut(s)	90, 190
MspR9I	CCNGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	132
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	46, 102, 130, 156
Psp124BI	GAGCTC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	97
SatI	GCNGC	4 cut(s)	45, 101, 129, 155
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	2 cut(s)	49, 97
SfaNI	GCATC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	2 cut(s)	98, 101
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	2 cut(s)	25, 72
TasI	AATT	1 cut(s)	132
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	69
TseI	GCWGC	3 cut(s)	44, 128, 154
TspDTI	ATGAA	2 cut(s)	42, 172
TspGWI	ACGGA	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.