RLG00000030393

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
60832819 .. 60840657
7839 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030393

Sequence Viewer

Length: 1254 bp
ATGCCAGACGTGCATACTCTTGTGAATGATTTCATTATCAAACTGAAAAAGCGTAAAATCGAGGGCTCGCAGGCTACGGCGAAGCAGACTGCTGAGTTACTTCGCTCGGTGATTTCGTCGCAGCGTGTGCCCTACACGAATCAAGCTGGAGCATTGATTGATGCTGTAAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATCCTGTGGAGCTTGCTGTGGGTAATATTGTGAGGCGGGTTTTGCACATTATCAGGGAGGAGGATCTTTCTCTCACCACAGCTGCCATGGCTGGGTTGAACTTGTCGACTGGCAGTGATGATGAAGATGATGTTGACCGCGACAACTATCCTGTTCTATCTGCTGCAGTAGTTGCAGCAGCTGCAAGAAGCACACTGCGTCCGCCTTCCTTGCAAACCCTTCTTGAAGACATGCCTGATGCAGCAGCTATTCCGCACACGTCTTCATCTGGGGGTGATTCTGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCTAGAAGCCGGAAGCTGAAGCATGATGTCATTGAAGCAGTCAATGAACTTATTCAAGATATTGGCACTTGCCATGAACAGATTGCTGAGCAAGCAGTAGAGCACATTCACCATAATGAGGTAATATTAACTCTAGGCAGTTCAAAAACAGTACTGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGTTGCAAGAGGTTTACAAACCACGCTGATCACTGATTCTGCTATTTTTGCTATGATATCTCGAGTGAACATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCCGTCCCTTTTGTTGTACTTGCTGGCAGTCACAAGTTGTGCCCTCTGTATCCACACAACCCTGAAGTCTTGCTGAATGAGTTAAGATCTCCTTCTGAGCTGCTGGATTTTGGAGAATTCTCAGATTGCATGGATTTTCGAAGTGGCACTGGTTCCCCACTTCTGCATGTTGTCAATCCTACATTTGATTTTGTGCCACCAAAGCTTGTTAGTCTATTTATCACTGATACTGGAGGCCATAATCCATCATACATGTACCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTTGTCCAACGAAGACCTGCTACAGGGAGTTGA

Protein Analysis

418

Amino Acids

45.02

Weight (kDa)

6.01

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 19 - 391 9.6e-68 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 305
AccII CGCG 1 cut(s) 339
AciI CCGC 4 cut(s) 235, 337, 401, 452
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 2 cut(s) 668, 1043
AcuI CTGAAG 3 cut(s) 501, 548, 1011
AfaI GTAC 3 cut(s) 663, 945, 1184
AfiI CCNNNNNNNGG 3 cut(s) 291, 628, 1244
AflIII ACRYGT 2 cut(s) 456, 1179
AgsI TTSAA 6 cut(s) 298, 425, 545, 566, 654, 898
AjiI CACGTC 2 cut(s) 10, 459
Alw21I GWGCWC 3 cut(s) 615, 730, 853
AlwI GGATC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 2 cut(s) 864, 1162
ApoI RAATTY 2 cut(s) 668, 1043
Asp700I GAANNNNTTC 2 cut(s) 29, 561
AsuHPI GGTGA 4 cut(s) 121, 265, 485, 611
AsuII TTCGAA 1 cut(s) 1066
AvaI CYCGRG 1 cut(s) 825
BaeGI GKGCMC 2 cut(s) 132, 971
BalI TGGCCA 1 cut(s) 866
BanII GRGCYC 2 cut(s) 68, 730
BarI GAAGNNNNNNTAC 1 cut(s) 1225
BbsI GAAGAC 3 cut(s) 432, 453, 1240
Bbv12I GWGCWC 3 cut(s) 615, 730, 853
BccI CCATC 1 cut(s) 1180
BceAI ACGGC 2 cut(s) 93, 914
BciVI GTATCC 1 cut(s) 987
BclI TGATCA 1 cut(s) 792
BfaI CTAG 2 cut(s) 513, 644
BfmI CTRYAG 2 cut(s) 363, 1242
BfuAI ACCTGC 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 987
BglII AGATCT 1 cut(s) 1013
BlpI GCTNAGC 1 cut(s) 597
BmcAI AGTACT 1 cut(s) 663
BmeT110I CYCGRG 1 cut(s) 825
BmgBI CACGTC 2 cut(s) 10, 459
BmiI GGNNCC 1 cut(s) 1081
BmsI GCATC 3 cut(s) 151, 427, 754
BpiI GAAGAC 3 cut(s) 432, 453, 1240
BpmI CTGGAG 2 cut(s) 168, 1179
Bpu1102I GCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 1066
BsaJI CCNNGG 2 cut(s) 285, 731
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 628, 1244
Bse118I RCCGGY 1 cut(s) 1185
Bse1I ACTGG 4 cut(s) 313, 669, 1081, 1162
BseDI CCNNGG 2 cut(s) 285, 731
BseLI CCNNNNNNNGG 3 cut(s) 291, 628, 1244
BseMII CTCAG 4 cut(s) 84, 588, 1014, 1062
BseNI ACTGG 4 cut(s) 313, 669, 1081, 1162
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 2 cut(s) 132, 971
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 866, 1164
BsiHKAI GWGCWC 3 cut(s) 615, 730, 853
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 2 cut(s) 520, 1186
BslFI GGGAC 1 cut(s) 917
BslI CCNNNNNNNGG 3 cut(s) 291, 628, 1244
BsmFI GGGAC 1 cut(s) 917
BsnI GGCC 2 cut(s) 866, 1164
BsoBI CYCGRG 1 cut(s) 825
Bsp119I TTCGAA 1 cut(s) 1066
Bsp1286I GDGCHC 6 cut(s) 68, 132, 615, 730, 853, 971
Bsp143I GATC 4 cut(s) 262, 698, 792, 1013
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 4 cut(s) 235, 337, 401, 452
BspANI GGCC 2 cut(s) 866, 1164
BspCNI CTCAG 4 cut(s) 85, 589, 1015, 1061
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 1081
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 1246
BspPI GGATC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 1066
BsrFI RCCGGY 1 cut(s) 1185
BsrI ACTGG 4 cut(s) 313, 669, 1081, 1162
BssAI RCCGGY 1 cut(s) 1185
BssECI CCNNGG 2 cut(s) 285, 731
BssMI GATC 4 cut(s) 262, 698, 792, 1013
BssT1I CCWWGG 2 cut(s) 285, 731
Bst4CI ACNGT 1 cut(s) 661
BstAPI GCANNNNNTGC 3 cut(s) 127, 371, 380
BstBI TTCGAA 1 cut(s) 1066
BstC8I GCNNGC 6 cut(s) 68, 72, 213, 603, 927, 952
BstDEI CTNAG 4 cut(s) 93, 597, 1023, 1048
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 1242
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 4 cut(s) 265, 701, 795, 1016
BstMBI GATC 4 cut(s) 262, 698, 792, 1013
BstNSI RCATGY 4 cut(s) 433, 929, 1097, 1183
BstSFI CTRYAG 2 cut(s) 363, 1242
BstSLI GKGCMC 2 cut(s) 132, 971
BstUI CGCG 1 cut(s) 339
BstV2I GAAGAC 3 cut(s) 432, 453, 1240
BstX2I RGATCY 2 cut(s) 262, 1013
BstYI RGATCY 2 cut(s) 262, 1013
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 2 cut(s) 866, 1164
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 1177
BtrI CACGTC 2 cut(s) 10, 459
BtsI GCAGTG 2 cut(s) 319, 392
BtsIMutI CAGTG 5 cut(s) 319, 392, 795, 1074, 1149
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 6 cut(s) 68, 72, 213, 603, 927, 952
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 1185
CseI GACGC 1 cut(s) 386
Csp6I GTAC 3 cut(s) 662, 944, 1183
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviQI GTAC 3 cut(s) 662, 944, 1183
DdeI CTNAG 4 cut(s) 93, 597, 1023, 1048
DpnI GATC 4 cut(s) 264, 700, 794, 1015
DpnII GATC 4 cut(s) 262, 698, 792, 1013
EaeI YGGCCR 1 cut(s) 864
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 285, 731
Eco24I GRGCYC 2 cut(s) 68, 730
Eco32I GATATC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 3 cut(s) 501, 548, 1011
Eco88I CYCGRG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 1242
EcoRI GAATTC 2 cut(s) 668, 1043
EcoRV GATATC 1 cut(s) 822
EcoT14I CCWWGG 2 cut(s) 285, 731
EcoT38I GRGCYC 2 cut(s) 68, 730
ErhI CCWWGG 2 cut(s) 285, 731
FalI AAGNNNNNCTT 2 cut(s) 1003, 1035
FaqI GGGAC 1 cut(s) 917
FauI CCCGC 1 cut(s) 228
FbaI TGATCA 1 cut(s) 792
FblI GTMKAC 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 68, 730
FspBI CTAG 2 cut(s) 513, 644
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 2 cut(s) 168, 1179
HaeIII GGCC 2 cut(s) 866, 1164
HapII CCGG 2 cut(s) 520, 1186
HgaI GACGC 1 cut(s) 386
HincII GTYRAC 2 cut(s) 306, 334
HindII GTYRAC 2 cut(s) 306, 334
HindIII AAGCTT 1 cut(s) 1130
HinfI GANTC 3 cut(s) 139, 476, 800
HpaII CCGG 2 cut(s) 520, 1186
HphI GGTGA 4 cut(s) 121, 265, 485, 611
Hpy166II GTNNAC 4 cut(s) 306, 334, 779, 832
Hpy188I TCNGA 3 cut(s) 481, 1024, 1051
Hpy188III TCNNGA 4 cut(s) 422, 513, 566, 825
Hpy8I GTNNAC 4 cut(s) 306, 334, 779, 832
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 414, 428, 476, 1029
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 2 cut(s) 9, 458
HpyF3I CTNAG 4 cut(s) 93, 597, 1023, 1048
HpySE526I ACGT 2 cut(s) 9, 458
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 4 cut(s) 262, 698, 792, 1013
LmnI GCTCC 5 cut(s) 149, 181, 208, 725, 733
LweI GCATC 3 cut(s) 151, 427, 754
MaeI CTAG 2 cut(s) 513, 644
MaeII ACGT 2 cut(s) 9, 458
MaeIII GTNAC 2 cut(s) 96, 956
MalI GATC 4 cut(s) 264, 700, 794, 1015
MboI GATC 4 cut(s) 262, 698, 792, 1013
MboII GAAGA 5 cut(s) 335, 437, 453, 740, 1245
MflI RGATCY 2 cut(s) 262, 1013
MhlI GDGCHC 6 cut(s) 68, 132, 615, 730, 853, 971
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 3 cut(s) 668, 761, 1043
MluNI TGGCCA 1 cut(s) 866
MmeI TCCRAC 1 cut(s) 1252
MnlI CCTC 9 cut(s) 55, 225, 250, 253, 622, 715, 767, 981, 1154
Mox20I TGGCCA 1 cut(s) 866
MroXI GAANNNNTTC 2 cut(s) 29, 561
MscI TGGCCA 1 cut(s) 866
MseI TTAA 2 cut(s) 638, 1010
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 3 cut(s) 187, 281, 380
MspI CCGG 2 cut(s) 520, 1186
MvnI CGCG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 285
NdeII GATC 4 cut(s) 262, 698, 792, 1013
NlaIV GGNNCC 1 cut(s) 1081
NmuCI GTSAC 1 cut(s) 956
NspI RCATGY 4 cut(s) 433, 929, 1097, 1183
NspV TTCGAA 1 cut(s) 1066
PaeI GCATGC 1 cut(s) 929
PaeR7I CTCGAG 1 cut(s) 825
PciI ACATGT 1 cut(s) 1179
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 29, 561
PfeI GAWTC 3 cut(s) 139, 476, 800
PscI ACATGT 1 cut(s) 1179
Psp124BI GAGCTC 1 cut(s) 730
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 1081
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 262, 1013
PvuII CAGCTG 3 cut(s) 187, 281, 380
RsaI GTAC 3 cut(s) 663, 945, 1184
RsaNI GTAC 3 cut(s) 662, 944, 1183
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 1 cut(s) 730
SalI GTCGAC 1 cut(s) 304
SaqAI TTAA 2 cut(s) 638, 1010
Sau3AI GATC 4 cut(s) 262, 698, 792, 1013
ScaI AGTACT 1 cut(s) 663
SduI GDGCHC 6 cut(s) 68, 132, 615, 730, 853, 971
SfaNI GCATC 3 cut(s) 151, 427, 754
SfcI CTRYAG 2 cut(s) 363, 1242
Sfr274I CTCGAG 1 cut(s) 825
SfuI TTCGAA 1 cut(s) 1066
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
SphI GCATGC 1 cut(s) 929
Sse9I AATT 3 cut(s) 668, 761, 1043
SsiI CCGC 4 cut(s) 235, 337, 401, 452
SspI AATATT 2 cut(s) 226, 636
SspMI CTAG 2 cut(s) 513, 644
SstI GAGCTC 1 cut(s) 730
StyI CCWWGG 2 cut(s) 285, 731
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 2 cut(s) 12, 461
TaqI TCGA 4 cut(s) 60, 305, 826, 1066
TasI AATT 3 cut(s) 668, 761, 1043
TatI WGTACW 2 cut(s) 661, 943
TfiI GAWTC 3 cut(s) 139, 476, 800
Tru1I TTAA 2 cut(s) 638, 1010
Tru9I TTAA 2 cut(s) 638, 1010
TscAI CASTG 5 cut(s) 319, 399, 802, 1081, 1156
TseFI GTSAC 1 cut(s) 956
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 5 cut(s) 22, 336, 453, 570, 600
TspRI CASTG 5 cut(s) 319, 399, 802, 1081, 1156
XagI CCTNNNNNAGG 1 cut(s) 1242
XapI RAATTY 2 cut(s) 668, 1043
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 4 cut(s) 433, 929, 1097, 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 29, 561
XspI CTAG 2 cut(s) 513, 644
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.