Rh1BG046200

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
6230562 .. 6238431
7870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG046200.1

Sequence Viewer

Length: 972 bp
ATGCCAGACGTGCATACTCTTGTGAATGATTTCATTATCAAGCTGAAAAAGCGTAAAATCGAGGGCTCGCAGGCTACGGCGAAGCAGACTGCTGAGTTACTTCGCTCGGTGATTTCGTCGCAGCGTGTGCCCTACACGAATCAAGCTGGAGCATTGATTGATGCTGTAAAGGCTGTTGGGGAGCAGCTGATTGCTGCAAATCCTGTGGAGCTTGCTGTGGGTAATATTGTGAGGCGGGTTTTGCACATTATCAGGGAGGAGGATCTTTCTCTCACCACAGCTGCAATGGCTGGGTTGAACTTGTCAGCTGTCAGTGATGATGAAGATGATGTTGACCGCGACAACTATCCTGTTCTATCTGCTGCTGTAGTTGCAGCAGCTGCAAGAAGCACACTGCGTCCGCCTTCCTTGCAAACCCTTCTTGAAGACATGCCTGATGCAGCAGCTATCCCTCACACTTCTTCATCAGGGGGTGATTCTGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCTAGAAGCCGGAAGCTGAAGCATGATGTCATTGAAGCAGTCAATGAACTTATTCAAGATATTGGCACTTGCCATGAACAGATTGCTGAGCAAGCAGTAGAGCACATTCACCATAATGAGGTTATATTAACTCTAGGCAGTTCAAAAACAGTACTGGAATTCCTTTTTGCTGCAAAGGAGAAAAAAAGATCATTTCGGGTATTTGTTGCAGAGGGAGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTGGTTGCAAGAGGTTTACAAACCACGCTGATCACTGATTCTGCAATTTTTGCTATGATATCTCGAGTGAACATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCCGTCCCTTTTGTTGTACTTGCTGGCAGTCACAAGGTTACATAA

Protein Analysis

323

Amino Acids

34.51

Weight (kDa)

6.64

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 19 - 322 4.8e-54 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 235, 337, 401
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 2 cut(s) 501, 548
AfaI GTAC 2 cut(s) 663, 945
AfiI CCNNNNNNNGG 1 cut(s) 628
AgsI TTSAA 6 cut(s) 298, 425, 545, 566, 654, 898
AjiI CACGTC 1 cut(s) 10
Alw21I GWGCWC 3 cut(s) 615, 730, 853
AlwI GGATC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 1 cut(s) 864
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 2 cut(s) 29, 561
AsuHPI GGTGA 4 cut(s) 121, 265, 485, 611
AvaI CYCGRG 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 866
BanII GRGCYC 2 cut(s) 68, 730
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 3 cut(s) 615, 730, 853
BceAI ACGGC 2 cut(s) 93, 914
BclI TGATCA 1 cut(s) 792
BfaI CTAG 2 cut(s) 513, 644
BfmI CTRYAG 1 cut(s) 366
BlpI GCTNAGC 1 cut(s) 597
BmcAI AGTACT 1 cut(s) 663
BmeT110I CYCGRG 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 10
BmsI GCATC 3 cut(s) 151, 427, 754
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 731
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 731
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 84, 588
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 1 cut(s) 866
BsiHKAI GWGCWC 3 cut(s) 615, 730, 853
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 1 cut(s) 520
BslFI GGGAC 1 cut(s) 917
BslI CCNNNNNNNGG 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 917
BsnI GGCC 1 cut(s) 866
BsoBI CYCGRG 1 cut(s) 825
Bsp1286I GDGCHC 5 cut(s) 68, 132, 615, 730, 853
Bsp143I GATC 3 cut(s) 262, 698, 792
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 3 cut(s) 235, 337, 401
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 2 cut(s) 85, 589
BspFNI CGCG 1 cut(s) 339
BspPI GGATC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 669
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 3 cut(s) 262, 698, 792
BssT1I CCWWGG 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 661
BstAPI GCANNNNNTGC 3 cut(s) 127, 380, 812
BstC8I GCNNGC 6 cut(s) 68, 72, 213, 603, 927, 952
BstDEI CTNAG 2 cut(s) 93, 597
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 3 cut(s) 265, 701, 795
BstMBI GATC 3 cut(s) 262, 698, 792
BstNSI RCATGY 2 cut(s) 433, 929
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 866
BtrI CACGTC 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 3 cut(s) 319, 392, 795
Cac8I GCNNGC 6 cut(s) 68, 72, 213, 603, 927, 952
CaiI CAGNNNCTG 1 cut(s) 380
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 662, 944
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 7 cut(s) 430, 533, 584, 835, 854, 862, 926
CviQI GTAC 2 cut(s) 662, 944
DdeI CTNAG 2 cut(s) 93, 597
DpnI GATC 3 cut(s) 264, 700, 794
DpnII GATC 3 cut(s) 262, 698, 792
EaeI YGGCCR 1 cut(s) 864
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 728
Eco130I CCWWGG 1 cut(s) 731
Eco24I GRGCYC 2 cut(s) 68, 730
Eco32I GATATC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 501, 548
Eco88I CYCGRG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 668
EcoRV GATATC 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 2 cut(s) 68, 730
ErhI CCWWGG 1 cut(s) 731
FaeI CATG 7 cut(s) 433, 536, 587, 838, 857, 865, 929
FaqI GGGAC 1 cut(s) 917
FatI CATG 7 cut(s) 429, 532, 583, 834, 853, 861, 925
FauI CCCGC 1 cut(s) 228
FbaI TGATCA 1 cut(s) 792
FriOI GRGCYC 2 cut(s) 68, 730
FspBI CTAG 2 cut(s) 513, 644
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 866
HapII CCGG 1 cut(s) 520
HgaI GACGC 1 cut(s) 386
Hin1II CATG 7 cut(s) 433, 536, 587, 838, 857, 865, 929
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 3 cut(s) 139, 476, 800
HpaII CCGG 1 cut(s) 520
HphI GGTGA 4 cut(s) 121, 265, 485, 611
Hpy166II GTNNAC 3 cut(s) 334, 779, 832
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 4 cut(s) 422, 513, 566, 825
Hpy8I GTNNAC 3 cut(s) 334, 779, 832
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 414, 428, 476
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 1 cut(s) 9
HpyF3I CTNAG 2 cut(s) 93, 597
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 7 cut(s) 433, 536, 587, 838, 857, 865, 929
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 3 cut(s) 262, 698, 792
LmnI GCTCC 5 cut(s) 149, 181, 208, 725, 733
LweI GCATC 3 cut(s) 151, 427, 754
MaeI CTAG 2 cut(s) 513, 644
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 96, 956, 964
MalI GATC 3 cut(s) 264, 700, 794
MboI GATC 3 cut(s) 262, 698, 792
MboII GAAGA 4 cut(s) 335, 437, 453, 740
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 5 cut(s) 68, 132, 615, 730, 853
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 3 cut(s) 668, 761, 807
MluNI TGGCCA 1 cut(s) 866
MnlI CCTC 8 cut(s) 55, 225, 250, 253, 462, 622, 715, 767
Mox20I TGGCCA 1 cut(s) 866
MroXI GAANNNNTTC 2 cut(s) 29, 561
MscI TGGCCA 1 cut(s) 866
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 4 cut(s) 187, 281, 308, 380
MspI CCGG 1 cut(s) 520
MvnI CGCG 1 cut(s) 339
NdeII GATC 3 cut(s) 262, 698, 792
NlaIII CATG 7 cut(s) 433, 536, 587, 838, 857, 865, 929
NmuCI GTSAC 1 cut(s) 956
NspI RCATGY 2 cut(s) 433, 929
PaeI GCATGC 1 cut(s) 929
PaeR7I CTCGAG 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 29, 561
PfeI GAWTC 3 cut(s) 139, 476, 800
Psp124BI GAGCTC 1 cut(s) 730
PspFI CCCAGC 1 cut(s) 290
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 4 cut(s) 187, 281, 308, 380
RsaI GTAC 2 cut(s) 663, 945
RsaNI GTAC 2 cut(s) 662, 944
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 1 cut(s) 638
Sau3AI GATC 3 cut(s) 262, 698, 792
ScaI AGTACT 1 cut(s) 663
SduI GDGCHC 5 cut(s) 68, 132, 615, 730, 853
SfaNI GCATC 3 cut(s) 151, 427, 754
SfcI CTRYAG 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 825
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
SphI GCATGC 1 cut(s) 929
Sse9I AATT 3 cut(s) 668, 761, 807
SsiI CCGC 3 cut(s) 235, 337, 401
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 513, 644
SstI GAGCTC 1 cut(s) 730
StyI CCWWGG 1 cut(s) 731
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 60, 826
TasI AATT 3 cut(s) 668, 761, 807
TatI WGTACW 2 cut(s) 661, 943
TfiI GAWTC 3 cut(s) 139, 476, 800
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 3 cut(s) 319, 399, 802
TseFI GTSAC 1 cut(s) 956
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 5 cut(s) 22, 336, 453, 570, 600
TspRI CASTG 3 cut(s) 319, 399, 802
XapI RAATTY 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 2 cut(s) 433, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 29, 561
XspI CTAG 2 cut(s) 513, 644
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.