Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Forward (+)

60019382 .. 60027412

Gene Structure 8031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATATCTCGAGTGAACATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGACATGCCGTCCCTTTTGTTGTACTTGCTGGCAGTCACAAGTTGTGCCCTCTGTATCCACACAACCCTGAAGTCTTGCTGAATGAGTTAAGATCTCCTTCTGAGCTGCTGGATTTTGGAGAATTCTCAGATTGCATGGATTTTCGAAGTGGCACTGGTTCCCCTCTTCTGCATGTTGTCAATCCTACATTTGATTTTGTGCCACCAAAGCTTGTTAGTCTATTTATCACTGATACTGGAGGCCATAATCCATCATACATGTACCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTTGTCCAACGAAGACCTGCTACAGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

145

Amino Acids

15.69

Weight (kDa)

6.01

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	2 - 119	4.2e-26	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	129, 368
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	113
AluBI	AGCT	3 cut(s)	211, 316, 435
AluI	AGCT	3 cut(s)	211, 316, 435
Alw21I	GWGCWC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	48, 346
ApeKI	GCWGC	2 cut(s)	98, 211
ApoI	RAATTY	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	50
BarI	GAAGNNNNNNTAC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	110, 198
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	171
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	99, 212
BlsI	GCNGC	2 cut(s)	100, 213
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	265, 346
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	198, 246
BseNI	ACTGG	2 cut(s)	265, 346
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	110, 198
BshFI	GGCC	2 cut(s)	50, 348
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	50, 348
BsoBI	CYCGRG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	37, 155
Bsp143I	GATC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	50, 348
BspCNI	CTCAG	2 cut(s)	199, 245
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	265, 346
BssAI	RCCGGY	1 cut(s)	369
BssMI	GATC	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	207, 232
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 98, 313
BstNSI	RCATGY	3 cut(s)	113, 281, 367
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	110, 198
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	50, 348
BtgZI	GCGATG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	258, 333
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	128, 367
CviAII	CATG	7 cut(s)	19, 38, 46, 110, 241, 278, 364
CviJI	RGCY	7 cut(s)	50, 101, 211, 316, 348, 373, 435
CviKI_1	RGCY	7 cut(s)	50, 101, 211, 316, 348, 373, 435
CviQI	GTAC	2 cut(s)	128, 367
DdeI	CTNAG	2 cut(s)	207, 232
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	7 cut(s)	22, 41, 49, 113, 244, 281, 367
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	18, 37, 45, 109, 240, 277, 363
Fnu4HI	GCNGC	2 cut(s)	99, 212
Fsp4HI	GCNGC	2 cut(s)	99, 212
GluI	GCNGC	2 cut(s)	99, 212
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	50, 348
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	7 cut(s)	22, 41, 49, 113, 244, 281, 367
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	208, 235
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	92, 98, 240, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 98, 313
HpyF3I	CTNAG	2 cut(s)	207, 232
Hsp92II	CATG	7 cut(s)	22, 41, 49, 113, 244, 281, 367
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	432
LpnPI	CCDG	8 cut(s)	84, 120, 186, 200, 246, 327, 383, 414
Lsp1109I	GCAGC	2 cut(s)	110, 198
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	2 cut(s)	263, 429
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	37, 155
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	3 cut(s)	165, 279, 338
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	47, 98, 313
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	7 cut(s)	22, 41, 49, 113, 244, 281, 367
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	3 cut(s)	113, 281, 367
NspV	TTCGAA	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	9
PciI	ACATGT	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	100, 213
PscI	ACATGT	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	129, 368
RsaNI	GTAC	2 cut(s)	128, 367
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	99, 212
Sau3AI	GATC	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	37, 155
SetI	ASST	5 cut(s)	73, 213, 318, 424, 437
SfcI	CTRYAG	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	10, 250
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	265, 340
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	98, 211
Tsp45I	GTSAC	1 cut(s)	140
TspRI	CASTG	2 cut(s)	265, 340
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	3 cut(s)	113, 281, 367
XhoI	CTCGAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.