Rorug03G0291700

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
29775294 .. 29778479
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0291700.1

Sequence Viewer

Length: 657 bp
ATGTCTGCTGCTTCTGCAACCGCTGTAGCAGCCTACATTTCTAGACCAAACTGTACCAGTCTCAGCCACGTACCCGTTTGGAGAAGCTCTTCTTCTCTAAGACCACAGCCGTCTCTTACTCGCATCTTCTTCAAAATCCCATGTGGGTTTTCCAAGCGAAGCTCGGTCTTCACTGGATTCAGACCTCTTTCCCCTGTTATGGAATGGCAGGACTGCACAGTAAAGACAAAAATTGATGTGCCTATTTCAGTCGCATATGATTGTTACTCTGATCGTGAGGCCATTCCCCAGTGGATGCCCTTTATTTCTACTGTAAAGGTATTGGAAGACAAGCCTGACCTATCACGATGGTCACTTAAGTATAGAGCTTTTGGGCGTGATATTGAATTCTCATGGCTTGCTCGAAATATGCAGCCCACCCGAAATCAGAAAATCCACTGGAGATCTCTGGAAGGTCTTCCTAACAGAGGCGCTGTTCGTTTTTATCCAAAAGGTCCTTCGTCATGCATAGTAGAATTAACAGTCTCTTACGAAGTTCCTGGAATTTTGGCTCCAGTGGCGTCAGCACTGCAACCTTTTACTGAAAGTTTACTTGGACGTGGCTTGGAAAGGTTTGCAACATTTGCAAAAAGCTACAAATCGGACTCAACTGTTTAA

Protein Analysis

218

Amino Acids

24.51

Weight (kDa)

9.68

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 73 - 207 7.4e-09 Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc PF03364 78 - 205 1.8e-14 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AcsI RAATTY 2 cut(s) 386, 543
AcyI GRCGYC 1 cut(s) 560
AfaI GTAC 2 cut(s) 55, 72
AfiI CCNNNNNNNGG 2 cut(s) 199, 467
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 2 cut(s) 133, 386
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 1 cut(s) 538
AjuI GAANNNNNNNTTGG 4 cut(s) 481, 513, 576, 608
AluBI AGCT 4 cut(s) 87, 162, 368, 633
AluI AGCT 4 cut(s) 87, 162, 368, 633
Alw26I GTCTC 3 cut(s) 65, 117, 529
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 8, 29, 412
ApoI RAATTY 2 cut(s) 386, 543
Asp700I GAANNNNTTC 2 cut(s) 88, 456
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 494
AvaII GGWCC 1 cut(s) 494
BbsI GAAGAC 3 cut(s) 160, 333, 449
BbvI GCAGC 2 cut(s) 41, 424
BccI CCATC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 65, 117, 529
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 443
BisI GCNGC 3 cut(s) 9, 30, 413
BlsI GCNGC 3 cut(s) 10, 31, 414
Bme1390I CCNGG 1 cut(s) 540
Bme18I GGWCC 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 540
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 132, 285
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 3 cut(s) 160, 333, 449
BpmI CTGGAG 2 cut(s) 460, 537
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 560
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 467
Bse1I ACTGG 5 cut(s) 57, 178, 289, 443, 554
BseBI CCWGG 1 cut(s) 540
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 199, 467
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 5 cut(s) 57, 178, 289, 443, 554
BseXI GCAGC 2 cut(s) 41, 424
BsgI GTGCAG 1 cut(s) 199
BshFI GGCC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 199, 467
BsmAI GTCTC 3 cut(s) 65, 117, 529
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 271, 443
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 94
BspTI CTTAAG 1 cut(s) 356
BsrI ACTGG 5 cut(s) 57, 178, 289, 443, 554
BssMI GATC 2 cut(s) 271, 443
BssNI GRCGYC 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 5 cut(s) 53, 220, 313, 523, 652
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 560
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 62, 98
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 274, 446
BstMAI GTCTC 3 cut(s) 65, 117, 529
BstMBI GATC 2 cut(s) 271, 443
BstMWI GCNNNNNNNGC 4 cut(s) 14, 29, 557, 623
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 41, 424
BstV2I GAAGAC 3 cut(s) 160, 333, 449
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 1 cut(s) 281
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 5 cut(s) 171, 296, 436, 561, 566
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 54, 71
CviAII CATG 3 cut(s) 141, 393, 504
CviQI GTAC 2 cut(s) 54, 71
DdeI CTNAG 2 cut(s) 62, 98
DpnI GATC 2 cut(s) 273, 445
DpnII GATC 2 cut(s) 271, 443
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 538
EcoT22I ATGCAT 1 cut(s) 509
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 144, 396, 507
FaiI YATR 9 cut(s) 142, 200, 256, 258, 363, 394, 410, 505, 509
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 3 cut(s) 140, 392, 503
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 9, 30, 413
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 3 cut(s) 9, 30, 413
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 472
GluI GCNGC 3 cut(s) 9, 30, 413
GsuI CTGGAG 2 cut(s) 460, 537
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 1 cut(s) 281
HgaI GACGC 1 cut(s) 549
HhaI GCGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 3 cut(s) 144, 396, 507
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 2 cut(s) 177, 644
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 182, 271, 429, 643
Hpy188III TCNNGA 4 cut(s) 42, 275, 345, 449
Hpy8I GTNNAC 1 cut(s) 590
HpyAV CCTTC 2 cut(s) 446, 507
HpyCH4III ACNGT 5 cut(s) 53, 220, 313, 523, 652
HpyCH4IV ACGT 2 cut(s) 69, 598
HpyCH4V TGCA 7 cut(s) 17, 216, 412, 507, 571, 617, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 29, 557, 623
HpyF3I CTNAG 2 cut(s) 62, 98
HpySE526I ACGT 2 cut(s) 69, 598
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 3 cut(s) 144, 396, 507
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 271, 443
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 2 cut(s) 41, 424
LweI GCATC 2 cut(s) 132, 285
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 69, 598
MaeIII GTNAC 2 cut(s) 263, 351
MalI GATC 2 cut(s) 273, 445
MboI GATC 2 cut(s) 271, 443
MboII GAAGA 7 cut(s) 81, 84, 118, 121, 160, 338, 449
MflI RGATCY 1 cut(s) 443
MluCI AATT 4 cut(s) 231, 386, 515, 543
MlyI GAGTC 1 cut(s) 638
MnlI CCTC 3 cut(s) 195, 271, 461
Mph1103I ATGCAT 1 cut(s) 509
MroXI GAANNNNTTC 2 cut(s) 88, 456
MseI TTAA 3 cut(s) 357, 518, 655
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 540
MwoI GCNNNNNNNGC 4 cut(s) 14, 29, 557, 623
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 271, 443
NlaIII CATG 3 cut(s) 144, 396, 507
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 1 cut(s) 351
NsiI ATGCAT 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 88, 456
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 3 cut(s) 10, 31, 414
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 494
PspPPI RGGWCCY 1 cut(s) 494
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 2 cut(s) 55, 72
RsaNI GTAC 2 cut(s) 54, 71
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 357, 518, 655
SatI GCNGC 3 cut(s) 9, 30, 413
Sau3AI GATC 2 cut(s) 271, 443
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 540
SfaNI GCATC 2 cut(s) 132, 285
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 231, 386, 515, 543
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 538
TaaI ACNGT 5 cut(s) 53, 220, 313, 523, 652
TaiI ACGT 2 cut(s) 72, 601
TaqI TCGA 1 cut(s) 403
TaqII GACCGA 1 cut(s) 154
TasI AATT 4 cut(s) 231, 386, 515, 543
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 357, 518, 655
Tru9I TTAA 3 cut(s) 357, 518, 655
TscAI CASTG 5 cut(s) 178, 296, 443, 561, 573
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 3 cut(s) 8, 29, 412
Tsp45I GTSAC 1 cut(s) 351
TspRI CASTG 5 cut(s) 178, 296, 443, 561, 573
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 494
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 2 cut(s) 386, 543
XbaI TCTAGA 1 cut(s) 41
XmnI GAANNNNTTC 2 cut(s) 88, 456
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.