Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

83684231 .. 83689904

Gene Structure 5674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG543800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGACAAACATGCATACTTTTGTGAATGATTTCCTTGACAAGCAAAAAAAATGTAAAATTGAGGGCTCGCAGGCCACAAGAAAGCAGACTGAGTTACTTAGCTTGGTGATTTCATCGCAGTGTGTACTCTACACAAATCAAGCTGGAGCCTCTATTGATGTTGTAAAGGTTGTTGGGGAGCTTGTGGAACTGGCTGTGGATGATATTTTAAGGTGGGTTTTGCACATTGTCAGGAAGGAGGATCCTTCTCTCACCACAGTTGCTATGGCTGGGTTGAACTTTTTGACTGTCAGTAATGATGAAGGTGATGGTGACCGAGACAATTATCCTGTTCTATCTGTTGCTGTAGTTGCAGCAGATGCAACTACAAGAAGCACACTGTGTCCGCTTTCCTTGCAAACCCTTCTTGAAGACATACATGATGCAGCAGCTATCCCTCACACTTCTTCATCTGGGGGTGATTCTGAAGGGAAAAACAAATCTGCTGATAAAAGTTCTAAAAGCCGGAAGCTGAAGCATGATGTCATTGAAGCAGTCAATGAACTTATTCAAGATATTGGCACTTGCCATGAACAGATAGCTGAGCAAGCAATAGAGCACATTCTCCATAACGAGAGTAGGATCCCATTAAATTTGGATCCTCCAGTCGGATCTCGCACCGGTCCTTCCACGACCTTTTCCGCTCTCGACGAGCTTCTCGTCGCTGTTGGCTGCATCACTGACTTTGATGAGTACCGCTCGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGAGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTGTAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

394

Amino Acids

43.91

Weight (kDa)

5.17

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	964
AccBSI	CCGCTC	2 cut(s)	683, 738
AciI	CCGC	4 cut(s)	386, 681, 736, 1174
AclWI	GGATC	7 cut(s)	236, 249, 616, 629, 632, 645, 658
AcsI	RAATTY	4 cut(s)	631, 943, 994, 1044
AcuI	CTGAAG	2 cut(s)	486, 533
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	3 cut(s)	126, 734, 857
AfiI	CCNNNNNNNGG	2 cut(s)	647, 964
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	277, 410, 530, 551, 955
AleI	CACNNNNGTG	1 cut(s)	1169
AluBI	AGCT	9 cut(s)	102, 143, 181, 431, 511, 581, 694, 817, 891
AluI	AGCT	9 cut(s)	102, 143, 181, 431, 511, 581, 694, 817, 891
Alw21I	GWGCWC	2 cut(s)	600, 846
Alw26I	GTCTC	3 cut(s)	312, 794, 965
Alw44I	GTGCAC	1 cut(s)	842
AlwI	GGATC	7 cut(s)	236, 249, 616, 629, 632, 645, 658
AlwNI	CAGNNNCTG	1 cut(s)	1114
AoxI	GGCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	842
ApeKI	GCWGC	4 cut(s)	353, 425, 428, 711
ApoI	RAATTY	4 cut(s)	631, 943, 994, 1044
AsiGI	ACCGGT	1 cut(s)	659
Asp700I	GAANNNNTTC	2 cut(s)	29, 546
AspS9I	GGNCC	2 cut(s)	662, 1033
AsuHPI	GGTGA	7 cut(s)	118, 244, 317, 323, 470, 778, 839
AvaII	GGWCC	2 cut(s)	662, 1033
BaeGI	GKGCMC	1 cut(s)	846
BamHI	GGATCC	3 cut(s)	241, 621, 637
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	600, 846
BbvI	GCAGC	4 cut(s)	365, 437, 440, 698
BccI	CCATC	5 cut(s)	302, 801, 893, 926, 987
BceAI	ACGGC	1 cut(s)	1096
BclI	TGATCA	1 cut(s)	1020
BcoDI	GTCTC	3 cut(s)	312, 794, 965
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	5 cut(s)	354, 426, 429, 712, 1175
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	5 cut(s)	355, 427, 430, 713, 1176
BmcAI	AGTACT	1 cut(s)	857
Bme18I	GGWCC	2 cut(s)	662, 1033
BmgT120I	GGNCC	2 cut(s)	662, 1033
BmiI	GGNNCC	5 cut(s)	148, 243, 623, 639, 1035
BmrI	ACTGGG	1 cut(s)	1164
BmsI	GCATC	4 cut(s)	349, 412, 723, 1101
BmuI	ACTGGG	1 cut(s)	1164
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	3 cut(s)	165, 627, 986
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	2 cut(s)	999, 1135
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 964
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	4 cut(s)	195, 644, 969, 1159
BseDI	CCNNGG	2 cut(s)	999, 1135
BseGI	GGATG	5 cut(s)	205, 748, 856, 904, 974
BseLI	CCNNNNNNNGG	2 cut(s)	647, 964
BseMII	CTCAG	3 cut(s)	81, 573, 832
BseNI	ACTGG	4 cut(s)	195, 644, 969, 1159
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	4 cut(s)	365, 437, 440, 698
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	659
BsiHKAI	GWGCWC	2 cut(s)	600, 846
BsiSI	CCGG	2 cut(s)	505, 660
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	2 cut(s)	647, 964
BsmAI	GTCTC	3 cut(s)	312, 794, 965
BsmFI	GGGAC	1 cut(s)	1078
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	3 cut(s)	68, 600, 846
Bsp143I	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
Bsp1720I	GCTNAGC	1 cut(s)	582
Bsp19I	CCATGG	1 cut(s)	1135
BspACI	CCGC	4 cut(s)	386, 681, 736, 1174
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	82, 574, 831
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	5 cut(s)	148, 243, 623, 639, 1035
BspPI	GGATC	7 cut(s)	236, 249, 616, 629, 632, 645, 658
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	2 cut(s)	683, 738
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	4 cut(s)	195, 644, 969, 1159
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	999, 1135
BssMI	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
BssT1I	CCWWGG	2 cut(s)	999, 1135
Bst4CI	ACNGT	3 cut(s)	259, 289, 381
BstAPI	GCANNNNNTGC	2 cut(s)	359, 1111
BstC8I	GCNNGC	3 cut(s)	68, 72, 588
BstDEI	CTNAG	4 cut(s)	90, 98, 582, 818
BstDSI	CCRYGG	1 cut(s)	1135
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	5 cut(s)	205, 748, 856, 904, 974
BstKTI	GATC	7 cut(s)	244, 624, 640, 653, 832, 871, 1023
BstMAI	GTCTC	3 cut(s)	312, 794, 965
BstMBI	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 359, 394, 587, 1111
BstNSI	RCATGY	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	846
BstV1I	GCAGC	4 cut(s)	365, 437, 440, 698
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	4 cut(s)	241, 621, 637, 650
BstYI	RGATCY	4 cut(s)	241, 621, 637, 650
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	1135
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	5 cut(s)	205, 748, 856, 904, 974
BtsI	GCAGTG	2 cut(s)	125, 1023
BtsIMutI	CAGTG	6 cut(s)	125, 377, 717, 962, 1023, 1152
Cac8I	GCNNGC	3 cut(s)	68, 72, 588
CaiI	CAGNNNCTG	1 cut(s)	1114
CciI	TCATGA	1 cut(s)	985
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	662, 1033
Csp6I	GTAC	3 cut(s)	125, 733, 856
CspAI	ACCGGT	1 cut(s)	659
CspCI	CAANNNNNGTGG	2 cut(s)	1083, 1118
CviAII	CATG	8 cut(s)	10, 419, 518, 569, 959, 986, 1136, 1160
CviQI	GTAC	3 cut(s)	125, 733, 856
DdeI	CTNAG	4 cut(s)	90, 98, 582, 818
DpnI	GATC	7 cut(s)	243, 623, 639, 652, 831, 870, 1022
DpnII	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
DraI	TTTAAA	1 cut(s)	948
DraIII	CACNNNGTG	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	999, 1135
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	2 cut(s)	662, 1033
Eco57I	CTGAAG	2 cut(s)	486, 533
Eco91I	GGTNACC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	1033
EcoO65I	GGTNACC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	999, 1135
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	2 cut(s)	999, 1135
FaeI	CATG	8 cut(s)	13, 422, 521, 572, 962, 989, 1139, 1163
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	8 cut(s)	9, 418, 517, 568, 958, 985, 1135, 1159
FbaI	TGATCA	1 cut(s)	1020
Fnu4HI	GCNGC	5 cut(s)	354, 426, 429, 712, 1175
FokI	GGATG	5 cut(s)	212, 755, 863, 911, 961
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	354, 426, 429, 712, 1175
GluI	GCNGC	5 cut(s)	354, 426, 429, 712, 1175
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	3 cut(s)	165, 627, 986
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	505, 660
Hin1II	CATG	8 cut(s)	13, 422, 521, 572, 962, 989, 1139, 1163
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	2 cut(s)	505, 660
HphI	GGTGA	7 cut(s)	118, 244, 317, 323, 470, 778, 839
Hpy166II	GTNNAC	2 cut(s)	125, 844
Hpy188I	TCNGA	4 cut(s)	466, 650, 742, 821
Hpy188III	TCNNGA	5 cut(s)	232, 407, 551, 686, 986
Hpy8I	GTNNAC	2 cut(s)	125, 844
Hpy99I	CGWCG	2 cut(s)	692, 704
HpyAV	CCTTC	6 cut(s)	229, 255, 296, 413, 461, 675
HpyCH4III	ACNGT	3 cut(s)	259, 289, 381
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 359, 394, 587, 1111
HpyF3I	CTNAG	4 cut(s)	90, 98, 582, 818
Hsp92II	CATG	8 cut(s)	13, 422, 521, 572, 962, 989, 1139, 1163
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
LmnI	GCTCC	2 cut(s)	146, 178
Lsp1109I	GCAGC	4 cut(s)	365, 437, 440, 698
LweI	GCATC	4 cut(s)	349, 412, 723, 1101
MaeIII	GTNAC	3 cut(s)	93, 311, 1076
MalI	GATC	7 cut(s)	243, 623, 639, 652, 831, 870, 1022
MbiI	CCGCTC	2 cut(s)	683, 738
MboI	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
MboII	GAAGA	4 cut(s)	422, 438, 823, 974
MflI	RGATCY	4 cut(s)	241, 621, 637, 650
MhlI	GDGCHC	3 cut(s)	68, 600, 846
MluCI	AATT	8 cut(s)	57, 322, 631, 784, 943, 950, 994, 1044
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	9 cut(s)	55, 160, 232, 447, 651, 742, 889, 961, 1024
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	29, 546
MseI	TTAA	3 cut(s)	209, 629, 947
MslI	CAYNNNNRTG	4 cut(s)	118, 849, 984, 1169
MspI	CCGG	2 cut(s)	505, 660
MwoI	GCNNNNNNNGC	5 cut(s)	350, 359, 394, 587, 1111
NcoI	CCATGG	1 cut(s)	1135
NdeII	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
NlaIII	CATG	8 cut(s)	13, 422, 521, 572, 962, 989, 1139, 1163
NlaIV	GGNNCC	5 cut(s)	148, 243, 623, 639, 1035
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	1169
PagI	TCATGA	1 cut(s)	985
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PdmI	GAANNNNTTC	2 cut(s)	29, 546
PfeI	GAWTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	964
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	355, 427, 430, 713, 1176
PpuMI	RGGWCCY	1 cut(s)	1033
Psp5II	RGGWCCY	1 cut(s)	1033
PspEI	GGTNACC	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	5 cut(s)	148, 243, 623, 639, 1035
PspPI	GGNCC	2 cut(s)	662, 1033
PspPPI	RGGWCCY	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	1114
PsuI	RGATCY	4 cut(s)	241, 621, 637, 650
RsaI	GTAC	3 cut(s)	126, 734, 857
RsaNI	GTAC	3 cut(s)	125, 733, 856
RseI	CAYNNNNRTG	4 cut(s)	118, 849, 984, 1169
SaqAI	TTAA	3 cut(s)	209, 629, 947
SatI	GCNGC	5 cut(s)	354, 426, 429, 712, 1175
Sau3AI	GATC	7 cut(s)	241, 621, 637, 650, 829, 868, 1020
Sau96I	GGNCC	2 cut(s)	662, 1033
ScaI	AGTACT	1 cut(s)	857
SduI	GDGCHC	3 cut(s)	68, 600, 846
SfaNI	GCATC	4 cut(s)	349, 412, 723, 1101
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	662, 1033
SmiMI	CAYNNNNRTG	4 cut(s)	118, 849, 984, 1169
Sse9I	AATT	8 cut(s)	57, 322, 631, 784, 943, 950, 994, 1044
SsiI	CCGC	4 cut(s)	386, 681, 736, 1174
StyI	CCWWGG	2 cut(s)	999, 1135
TaaI	ACNGT	3 cut(s)	259, 289, 381
TaqI	TCGA	2 cut(s)	687, 760
TaqII	GACCGA	1 cut(s)	330
TasI	AATT	8 cut(s)	57, 322, 631, 784, 943, 950, 994, 1044
TatI	WGTACW	2 cut(s)	124, 855
TauI	GCSGC	1 cut(s)	1177
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	209, 629, 947
Tru9I	TTAA	3 cut(s)	209, 629, 947
TscAI	CASTG	6 cut(s)	125, 384, 724, 969, 1023, 1159
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	353, 425, 428, 711
Tsp45I	GTSAC	1 cut(s)	311
TspRI	CASTG	6 cut(s)	125, 384, 724, 969, 1023, 1159
Van91I	CCANNNNNTGG	1 cut(s)	964
VneI	GTGCAC	1 cut(s)	842
VpaK11BI	GGWCC	2 cut(s)	662, 1033
XapI	RAATTY	4 cut(s)	631, 943, 994, 1044
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmnI	GAANNNNTTC	2 cut(s)	29, 546
ZrmI	AGTACT	1 cut(s)	857
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.