Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

68643296 .. 68647203

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG474300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCATCTGTTATTAGCTTTACTGCCGTGTCAATGGAGAACTATCATGATGGGATTAATGAAGGAAACGATCTAGGTTCAATAGATTTTGATATTCTGGTCCCAAATCTTGAGGTTATAGTTGGTGCTCGTGCTGTCATGGCCAATGGTGGTGTTATAGCACCTGTTGGTTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGATGTGCTTGCTGGCGGTTACAAGGGATTACAGAAAGCTATAATGGTAATGGTTGGATGGAGAGATGATGAAACCAATTGTTTAGTCTTATGGAACCATGAAGACCATTGTTACTGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

4.72

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	39 - 80	7.5e-09	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	81, 175
AluBI	AGCT	2 cut(s)	18, 254
AluI	AGCT	2 cut(s)	18, 254
Alw21I	GWGCWC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	191
AseI	ATTAAT	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	143
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	2 cut(s)	44, 267
BceAI	ACGGC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	102, 311
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	333
BseGI	GGATG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	86, 194
BsmFI	GGGAC	2 cut(s)	86, 194
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	102, 311
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssMI	GATC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	204, 225, 229
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 191
BstNSI	RCATGY	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	204, 225, 229
CciI	TCATGA	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	4 cut(s)	47, 139, 203, 314
CviJI	RGCY	4 cut(s)	18, 143, 194, 254
CviKI_1	RGCY	4 cut(s)	18, 143, 194, 254
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	100
FaeI	CATG	4 cut(s)	50, 142, 206, 317
FaiI	YATR	9 cut(s)	48, 119, 140, 158, 179, 204, 257, 307, 315
FaqI	GGGAC	2 cut(s)	86, 194
FatI	CATG	4 cut(s)	46, 138, 202, 313
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	4 cut(s)	50, 142, 206, 317
HpaII	CCGG	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	47, 110
HpyAV	CCTTC	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	185, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 191
Hsp92II	CATG	4 cut(s)	50, 142, 206, 317
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	83, 177, 213
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	233, 326
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	140, 191
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	50, 142, 206, 317
NlaIV	GGNNCC	2 cut(s)	102, 311
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	102, 311
PspPI	GGNCC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	5 cut(s)	20, 79, 117, 166, 256
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	1 cut(s)	74
TasI	AATT	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	75, 300, 330
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	57
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.