Rh2CG439500

acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000605
Physical Location & Seq
Reverse (-)
59650330 .. 59650805
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG439500.1

Sequence Viewer

Length: 237 bp
ATGGAGTTCAAAGCAGGGTTTAGTTCGGTGCTCCGATCCGCAAATCACATCCTTTTATCTCCAATAGGATTCTTGGAGCGAGCTGCAAAGGCCTACAGGAACAGGACCTCTGTTGCAACTTTGGCACCAAATGTCCCGGCTATGCATGAGCTTCATTTTGCAGCTCCAATAGCTGGAGCAGTTCTTTGTACACTAAATTCACGCCTTAGATTCAGCTATGATATCTGTTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

9.69

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07300 AT3G07300 AT3G07300
fragaria_vesca FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis pycom07g02550
rosa_chinensis RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 173
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 5 cut(s) 83, 151, 164, 173, 216
AluI AGCT 5 cut(s) 83, 151, 164, 173, 216
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 30
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 83, 161
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 70, 173
BcnI CCSGG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 94
BisI GCNGC 2 cut(s) 84, 162
BlsI GCNGC 2 cut(s) 85, 163
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 70, 173
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 33
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 188
BssMI GATC 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 206, 234
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 89, 122, 170
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 70, 173
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 146
CviJI RGCY 7 cut(s) 83, 92, 140, 151, 164, 173, 216
CviKI_1 RGCY 7 cut(s) 83, 92, 140, 151, 164, 173, 216
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 206, 234
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 92
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 105
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 147
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 143, 147, 219
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 84, 162
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 84, 162
GluI GCNGC 2 cut(s) 84, 162
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 149
HinfI GANTC 2 cut(s) 69, 210
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 86, 116, 145, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 122, 170
HpyF3I CTNAG 2 cut(s) 206, 234
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 4 cut(s) 36, 76, 169, 176
LpnPI CCDG 4 cut(s) 82, 88, 150, 159
Lsp1109I GCAGC 2 cut(s) 70, 173
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 196
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 147
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 89, 122, 170
NciI CCSGG 1 cut(s) 137
NdeII GATC 1 cut(s) 35
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 147
PceI AGGCCT 1 cut(s) 92
PfeI GAWTC 2 cut(s) 69, 210
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 2 cut(s) 85, 163
PpuMI RGGWCCY 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 105
PspPPI RGGWCCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SatI GCNGC 2 cut(s) 84, 162
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 33
SetI ASST 6 cut(s) 85, 110, 153, 166, 175, 218
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 135
TasI AATT 1 cut(s) 196
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 2 cut(s) 69, 210
TseI GCWGC 2 cut(s) 83, 161
TspDTI ATGAA 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.