Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

29694557 .. 29697028

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTTCCGGCTCATCGCAGATTATTACTCTGCTGATGATTTGGTAATCCAACGAAAACCTGTTACAGGAGTTGAGTTTAGCTCATGCTTTTATATCATATATTGGGGAGTACAAAAAGCTATAATGGTAATGGTTGGATGGAGAGATGATGAAATCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

54

Amino Acids

6.36

Weight (kDa)

4.6

Isoelectric Point (pI)

23.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	81, 119
AluI	AGCT	2 cut(s)	81, 119
BccI	CCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	3 cut(s)	10, 81, 119
CviKI_1	RGCY	3 cut(s)	10, 81, 119
CviQI	GTAC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 93, 98, 100, 122
FatI	CATG	1 cut(s)	83
FokI	GGATG	1 cut(s)	150
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	1 cut(s)	87
HpaII	CCGG	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	20, 51, 72
MaeIII	GTNAC	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	73, 115
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	157
NlaIII	CATG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SetI	ASST	3 cut(s)	61, 83, 121
SgeI	CNNG	4 cut(s)	19, 71, 78, 96
Sse9I	AATT	1 cut(s)	157
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.