Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000605

Physical Location & Seq

Genomic Coordinates Reverse (-)

25961422 .. 25988354

Gene Structure 26933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAACCAACTACGTATCTTGGCGAGTACGTTGATGGAGCATCCCCCTGATATGGAAAGGAACAATGTCGAAATACAAATCTACTCTAGGGCTACTCAGAGTATTGACCTCTCTTGCAATAGTTTCAATGGGGAGATTCCGAGTGAAATCAGGTTTCTTGTTGGGTTGGTTTCTTTAAACCTGTCGAAAAACCAATTAACAGGTCTAATACCTCGGGAGATTGGAACCTTGCAGTCATTGTACTCGCTTGATTTGTCAAGAAACCAGTTGCATGGTAGAATTACAACCAGCATTTCTCAGATACCTCGTCTCAACGAAGAAAGACTGAGCGAGAAAGCAGAGAAGCAACAATGTCGGGTTTCAATTTCGGATCCTCCGAGGCCTCTGCTTCTCAATCCACTTCCCCTTTCGGATCCTCCACCCCGCCTTTCTCATTCGCCTCCTCCCCTTCCCTCTTTGGATCCTCCGCGCCCACCACCGCCTCCACCGGGTTCGGACTCGGATCCTCCCCTTTCGGCTCCGCTCCCTCAAACCTCTCCACCTCTTCTTCCCCTTTCAGCTTCTTATCCAACACCGCCTCCTCCCCCGCTTTCGGTACCCCAAACCCAAAAGCCCCGCCCCGCCCCTAACCCGAGCCCGTTTCCTTTCATTCGGATTCATTCCCTGCACCGCCGGTTCGGGCTCCACTCCGTCGTGGCCTATGTTCAGGGGCATCTTCTTGCAAAAGAATTGGTTGCAAGAGGTTTACAAACCACGCTGATTACTGATTCTGCAATTTTTGCTATGATATCTCGAGTGAACATGGTTATAGTTGGTGCTCATGCTGTCATGGCCAATGGTGATGTTTTAGCACCTGTTGGGTTGAATATGGTTGCACTTGCAGCCCAAAGGCATGCTGTCCCTTTTGCTGTACTTGCTGGCAGTCACAAGTTGTGCCCTCTGTATTCACACAACCCTGAAGTCTTGCTGAATGAATTAAGATCTCCTTCTGAGCCGCTGGATTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

337

Amino Acids

36.56

Weight (kDa)

8.5

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	33 - 90	2.2e-07	Leucine rich repeat
IF-2B	PF01008	235 - 331	4.8e-26	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07300 AT3G07300 AT3G07300
fragaria_vesca	FvH4_1g26370 FvH4_4g04150 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780 FvH4_7g02780
malus_domestica	MD02G1290200.v1.1 MD07G1036800.v1.1 MD13G1218100.v1.1 MD13G1218200.v1.1
prunus_persica	Prupe.1G044800_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1 Prupe.2G032300_v2.0.a1
pyrus_communis	pycom07g02550
rosa_chinensis	RchiOBHm_Chr1g0313651 RchiOBHm_Chr1g0322021 RchiOBHm_Chr1g0322871 RchiOBHm_Chr1g0322881 RchiOBHm_Chr1g0378031 RchiOBHm_Chr2g0146721 RchiOBHm_Chr4g0394571 RchiOBHm_Chr4g0444661
rosa_laevigata	RLG00000009689 RLG00000014710 RLG00000020215 RLG00000028674 RLG00000030393
rosa_multiflora	Rmu_sc0001168.1_g000008 Rmu_sc0001168.1_g000019 Rmu_sc0001986.1_g000042 Rmu_sc0005424.1_g000018
rosa_roxburghii	Rroxscaffold_1G00066950 Rroxscaffold_4G00308160 Rroxscaffold_4G00327340 Rroxscaffold_4G00331500 Rroxscaffold_5G00339610 Rroxscaffold_5G00370190 Rroxscaffold_6G00400520 Rroxscaffold_7G00188200
rosa_rugosa	Rorug01G0035100 Rorug01G0035200 Rorug01G0131800.1 Rorug01G0193700 Rorug03G0291700 Rorug03G0291800 Rorug03G0291800 Rorug03G0291900 Rorug03G0364400.1 Rorug04G0439300 Rorug04G0439400 Rorug05G0543000 Rorug07G0306800
rosa_samantha	Rh1AG048400 Rh1AG309400 Rh1AG358100 Rh1AG424800 Rh1BG046200 Rh1CG052500 Rh1DG056700 Rh2AG452600 Rh2BG465300 Rh2CG439500 Rh2DG245700 Rh2DG245800 Rh2DG474300 Rh4AG053000 Rh4BG050900 Rh4CG057700 Rh4DG049700 Rh5BG052500 Rh5DG543800 Rh6DG164300 Rh7AG422900 Rh7BG328900
rosa_wichuraiana	Rw1G004380 Rw4G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	595
AccBSI	CCGCTC	1 cut(s)	523
AccII	CGCG	1 cut(s)	469
AclWI	GGATC	8 cut(s)	365, 378, 407, 420, 455, 468, 497, 510
AcoI	YGGCCR	1 cut(s)	831
AcuI	CTGAAG	1 cut(s)	978
AfaI	GTAC	4 cut(s)	28, 242, 597, 912
AfiI	CCNNNNNNNGG	3 cut(s)	52, 488, 592
AgsI	TTSAA	3 cut(s)	127, 363, 865
AluBI	AGCT	1 cut(s)	560
AluI	AGCT	1 cut(s)	560
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	8 cut(s)	365, 378, 407, 420, 455, 468, 497, 510
Ama87I	CYCGRG	3 cut(s)	213, 631, 792
AoxI	GGCC	3 cut(s)	380, 696, 831
ApeKI	GCWGC	1 cut(s)	881
Asp718I	GGTACC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	851
AvaI	CYCGRG	3 cut(s)	213, 631, 792
BaeGI	GKGCMC	1 cut(s)	938
BalI	TGGCCA	1 cut(s)	833
BamHI	GGATCC	4 cut(s)	370, 412, 460, 502
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	638, 684
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	1 cut(s)	893
BccI	CCATC	1 cut(s)	28
BcgI	CGANNNNNNTGC	4 cut(s)	335, 367, 369, 401
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	980
BisI	GCNGC	2 cut(s)	882, 995
BlsI	GCNGC	2 cut(s)	883, 996
Bme1390I	CCNGG	1 cut(s)	489
BmeT110I	CYCGRG	3 cut(s)	213, 631, 792
BmiI	GGNNCC	8 cut(s)	226, 372, 414, 462, 504, 519, 597, 683
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	49, 721
BpuMI	CCSGG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	212, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 488, 592
Bse118I	RCCGGY	1 cut(s)	672
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	2 cut(s)	212, 377
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	52, 488, 592
BseMII	CTCAG	4 cut(s)	110, 311, 317, 981
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	432, 570
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	382, 698, 833
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	3 cut(s)	213, 631, 792
BsiSI	CCGG	2 cut(s)	488, 673
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	3 cut(s)	52, 488, 592
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	3 cut(s)	382, 698, 833
BsoBI	CYCGRG	3 cut(s)	213, 631, 792
Bsp1286I	GDGCHC	4 cut(s)	638, 684, 820, 938
Bsp143I	GATC	5 cut(s)	370, 412, 460, 502, 980
BspANI	GGCC	3 cut(s)	382, 698, 833
BspCNI	CTCAG	4 cut(s)	109, 310, 318, 982
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	8 cut(s)	226, 372, 414, 462, 504, 519, 597, 683
BspPI	GGATC	8 cut(s)	365, 378, 407, 420, 455, 468, 497, 510
BspT107I	GGYRCC	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	2 cut(s)	212, 377
BssMI	GATC	5 cut(s)	370, 412, 460, 502, 980
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	894, 919
BstDEI	CTNAG	4 cut(s)	96, 297, 326, 990
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	5 cut(s)	373, 415, 463, 505, 983
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	5 cut(s)	370, 412, 460, 502, 980
BstMWI	GCNNNNNNNGC	4 cut(s)	779, 830, 881, 914
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	938
BstSNI	TACGTA	1 cut(s)	14
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	893
BstX2I	RGATCY	5 cut(s)	370, 412, 460, 502, 980
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	5 cut(s)	370, 412, 460, 502, 980
BsuRI	GGCC	3 cut(s)	382, 698, 833
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	894, 919
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	672
Csp6I	GTAC	4 cut(s)	27, 241, 596, 911
CviAII	CATG	5 cut(s)	272, 802, 821, 829, 893
CviQI	GTAC	4 cut(s)	27, 241, 596, 911
DdeI	CTNAG	4 cut(s)	96, 297, 326, 990
DpnI	GATC	5 cut(s)	372, 414, 462, 504, 982
DpnII	GATC	5 cut(s)	370, 412, 460, 502, 980
DraI	TTTAAA	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco105I	TACGTA	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	638, 684
Eco32I	GATATC	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	978
Eco88I	CYCGRG	3 cut(s)	213, 631, 792
EcoRV	GATATC	1 cut(s)	789
EcoT38I	GRGCYC	2 cut(s)	638, 684
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	5 cut(s)	275, 805, 824, 832, 896
FalI	AAGNNNNNCTT	2 cut(s)	970, 1002
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	271, 801, 820, 828, 892
FauI	CCCGC	4 cut(s)	431, 594, 623, 628
Fnu4HI	GCNGC	2 cut(s)	882, 995
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	2 cut(s)	638, 684
Fsp4HI	GCNGC	2 cut(s)	882, 995
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	2 cut(s)	882, 995
HaeIII	GGCC	3 cut(s)	382, 698, 833
HapII	CCGG	2 cut(s)	488, 673
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	5 cut(s)	275, 805, 824, 832, 896
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	4 cut(s)	136, 497, 655, 767
HpaII	CCGG	2 cut(s)	488, 673
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	2 cut(s)	746, 799
Hpy188III	TCNNGA	3 cut(s)	215, 258, 792
Hpy8I	GTNNAC	2 cut(s)	746, 799
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	2 cut(s)	458, 996
HpyCH4IV	ACGT	2 cut(s)	13, 29
HpyCH4V	TGCA	9 cut(s)	117, 232, 271, 667, 722, 737, 773, 875, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	779, 830, 881, 914
HpyF3I	CTNAG	4 cut(s)	96, 297, 326, 990
HpySE526I	ACGT	2 cut(s)	13, 29
Hsp92II	CATG	5 cut(s)	275, 805, 824, 832, 896
HspAI	GCGC	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	599
Kzo9I	GATC	5 cut(s)	370, 412, 460, 502, 980
LmnI	GCTCC	4 cut(s)	37, 523, 528, 687
Lsp1109I	GCAGC	1 cut(s)	893
LweI	GCATC	2 cut(s)	49, 721
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	13, 29
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	5 cut(s)	372, 414, 462, 504, 982
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	5 cut(s)	370, 412, 460, 502, 980
MboII	GAAGA	4 cut(s)	329, 536, 539, 707
MflI	RGATCY	5 cut(s)	370, 412, 460, 502, 980
MhlI	GDGCHC	4 cut(s)	638, 684, 820, 938
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	6 cut(s)	194, 279, 363, 728, 774, 974
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	593
Mox20I	TGGCCA	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	3 cut(s)	176, 197, 977
Msp20I	TGGCCA	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	997
MspI	CCGG	2 cut(s)	488, 673
MspR9I	CCNGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	4 cut(s)	779, 830, 881, 914
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	370, 412, 460, 502, 980
NlaIII	CATG	5 cut(s)	275, 805, 824, 832, 896
NlaIV	GGNNCC	8 cut(s)	226, 372, 414, 462, 504, 519, 597, 683
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	896
PaeR7I	CTCGAG	1 cut(s)	792
PceI	AGGCCT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	136, 655, 767
PkrI	GCNGC	2 cut(s)	883, 996
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Ppu21I	YACGTR	1 cut(s)	14
PspN4I	GGNNCC	8 cut(s)	226, 372, 414, 462, 504, 519, 597, 683
PsuI	RGATCY	5 cut(s)	370, 412, 460, 502, 980
RsaI	GTAC	4 cut(s)	28, 242, 597, 912
RsaNI	GTAC	4 cut(s)	27, 241, 596, 911
SaqAI	TTAA	3 cut(s)	176, 197, 977
SatI	GCNGC	2 cut(s)	882, 995
Sau3AI	GATC	5 cut(s)	370, 412, 460, 502, 980
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	4 cut(s)	638, 684, 820, 938
SfaNI	GCATC	2 cut(s)	49, 721
Sfr274I	CTCGAG	1 cut(s)	792
SlaI	CTCGAG	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
SnaBI	TACGTA	1 cut(s)	14
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	6 cut(s)	194, 279, 363, 728, 774, 974
SseBI	AGGCCT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	487
TaiI	ACGT	2 cut(s)	16, 32
TaqI	TCGA	3 cut(s)	69, 185, 793
TasI	AATT	6 cut(s)	194, 279, 363, 728, 774, 974
TatI	WGTACW	2 cut(s)	240, 910
TauI	GCSGC	1 cut(s)	997
TfiI	GAWTC	3 cut(s)	136, 655, 767
Tru1I	TTAA	3 cut(s)	176, 197, 977
Tru9I	TTAA	3 cut(s)	176, 197, 977
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	1 cut(s)	881
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	4 cut(s)	17, 637, 647, 987
TspGWI	ACGGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	896
XhoI	CTCGAG	1 cut(s)	792
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.